Job ID = 6368850 SRX = SRX6619549 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:32:30 prefetch.2.10.7: 1) Downloading 'SRR9866060'... 2020-06-16T00:32:30 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:41:57 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:41:57 prefetch.2.10.7: 1) 'SRR9866060' was downloaded successfully 2020-06-16T00:41:57 prefetch.2.10.7: 'SRR9866060' has 0 unresolved dependencies Read 29499160 spots for SRR9866060/SRR9866060.sra Written 29499160 spots for SRR9866060/SRR9866060.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:56:29 29499160 reads; of these: 29499160 (100.00%) were paired; of these: 12654988 (42.90%) aligned concordantly 0 times 14260312 (48.34%) aligned concordantly exactly 1 time 2583860 (8.76%) aligned concordantly >1 times ---- 12654988 pairs aligned concordantly 0 times; of these: 7641985 (60.39%) aligned discordantly 1 time ---- 5013003 pairs aligned 0 times concordantly or discordantly; of these: 10026006 mates make up the pairs; of these: 7287505 (72.69%) aligned 0 times 1311694 (13.08%) aligned exactly 1 time 1426807 (14.23%) aligned >1 times 87.65% overall alignment rate Time searching: 00:56:29 Overall time: 00:56:29 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2627529 / 23812590 = 0.1103 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:07:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:07:28: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:07:28: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:07:36: 1000000 INFO @ Tue, 16 Jun 2020 11:07:46: 2000000 INFO @ Tue, 16 Jun 2020 11:07:55: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:07:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:07:58: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:07:58: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:08:05: 4000000 INFO @ Tue, 16 Jun 2020 11:08:08: 1000000 INFO @ Tue, 16 Jun 2020 11:08:14: 5000000 INFO @ Tue, 16 Jun 2020 11:08:18: 2000000 INFO @ Tue, 16 Jun 2020 11:08:23: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:08:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:08:28: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:08:28: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:08:28: 3000000 INFO @ Tue, 16 Jun 2020 11:08:33: 7000000 INFO @ Tue, 16 Jun 2020 11:08:38: 1000000 INFO @ Tue, 16 Jun 2020 11:08:39: 4000000 INFO @ Tue, 16 Jun 2020 11:08:42: 8000000 INFO @ Tue, 16 Jun 2020 11:08:49: 5000000 INFO @ Tue, 16 Jun 2020 11:08:49: 2000000 INFO @ Tue, 16 Jun 2020 11:08:52: 9000000 INFO @ Tue, 16 Jun 2020 11:08:58: 6000000 INFO @ Tue, 16 Jun 2020 11:09:00: 3000000 INFO @ Tue, 16 Jun 2020 11:09:01: 10000000 INFO @ Tue, 16 Jun 2020 11:09:08: 7000000 INFO @ Tue, 16 Jun 2020 11:09:10: 11000000 INFO @ Tue, 16 Jun 2020 11:09:11: 4000000 INFO @ Tue, 16 Jun 2020 11:09:17: 8000000 INFO @ Tue, 16 Jun 2020 11:09:20: 12000000 INFO @ Tue, 16 Jun 2020 11:09:20: 5000000 INFO @ Tue, 16 Jun 2020 11:09:27: 9000000 INFO @ Tue, 16 Jun 2020 11:09:29: 13000000 INFO @ Tue, 16 Jun 2020 11:09:30: 6000000 INFO @ Tue, 16 Jun 2020 11:09:36: 10000000 INFO @ Tue, 16 Jun 2020 11:09:39: 14000000 INFO @ Tue, 16 Jun 2020 11:09:39: 7000000 INFO @ Tue, 16 Jun 2020 11:09:46: 11000000 INFO @ Tue, 16 Jun 2020 11:09:48: 15000000 INFO @ Tue, 16 Jun 2020 11:09:49: 8000000 INFO @ Tue, 16 Jun 2020 11:09:55: 12000000 INFO @ Tue, 16 Jun 2020 11:09:58: 16000000 INFO @ Tue, 16 Jun 2020 11:09:58: 9000000 INFO @ Tue, 16 Jun 2020 11:10:05: 13000000 INFO @ Tue, 16 Jun 2020 11:10:07: 17000000 INFO @ Tue, 16 Jun 2020 11:10:08: 10000000 INFO @ Tue, 16 Jun 2020 11:10:14: 14000000 INFO @ Tue, 16 Jun 2020 11:10:16: 18000000 INFO @ Tue, 16 Jun 2020 11:10:17: 11000000 INFO @ Tue, 16 Jun 2020 11:10:23: 15000000 INFO @ Tue, 16 Jun 2020 11:10:26: 19000000 INFO @ Tue, 16 Jun 2020 11:10:26: 12000000 INFO @ Tue, 16 Jun 2020 11:10:33: 16000000 INFO @ Tue, 16 Jun 2020 11:10:35: 13000000 INFO @ Tue, 16 Jun 2020 11:10:35: 20000000 INFO @ Tue, 16 Jun 2020 11:10:43: 17000000 INFO @ Tue, 16 Jun 2020 11:10:45: 14000000 INFO @ Tue, 16 Jun 2020 11:10:45: 21000000 INFO @ Tue, 16 Jun 2020 11:10:52: 18000000 INFO @ Tue, 16 Jun 2020 11:10:54: 15000000 INFO @ Tue, 16 Jun 2020 11:10:55: 22000000 INFO @ Tue, 16 Jun 2020 11:11:02: 19000000 INFO @ Tue, 16 Jun 2020 11:11:03: 16000000 INFO @ Tue, 16 Jun 2020 11:11:05: 23000000 INFO @ Tue, 16 Jun 2020 11:11:12: 20000000 INFO @ Tue, 16 Jun 2020 11:11:13: 17000000 INFO @ Tue, 16 Jun 2020 11:11:15: 24000000 INFO @ Tue, 16 Jun 2020 11:11:22: 18000000 INFO @ Tue, 16 Jun 2020 11:11:22: 21000000 INFO @ Tue, 16 Jun 2020 11:11:25: 25000000 INFO @ Tue, 16 Jun 2020 11:11:31: 19000000 INFO @ Tue, 16 Jun 2020 11:11:32: 22000000 INFO @ Tue, 16 Jun 2020 11:11:35: 26000000 INFO @ Tue, 16 Jun 2020 11:11:41: 20000000 INFO @ Tue, 16 Jun 2020 11:11:41: 23000000 INFO @ Tue, 16 Jun 2020 11:11:44: 27000000 INFO @ Tue, 16 Jun 2020 11:11:50: 21000000 INFO @ Tue, 16 Jun 2020 11:11:51: 24000000 INFO @ Tue, 16 Jun 2020 11:11:53: 28000000 INFO @ Tue, 16 Jun 2020 11:11:59: 22000000 INFO @ Tue, 16 Jun 2020 11:12:00: 25000000 INFO @ Tue, 16 Jun 2020 11:12:03: 29000000 INFO @ Tue, 16 Jun 2020 11:12:09: 23000000 INFO @ Tue, 16 Jun 2020 11:12:09: 26000000 INFO @ Tue, 16 Jun 2020 11:12:12: 30000000 INFO @ Tue, 16 Jun 2020 11:12:18: 24000000 INFO @ Tue, 16 Jun 2020 11:12:19: 27000000 INFO @ Tue, 16 Jun 2020 11:12:21: 31000000 INFO @ Tue, 16 Jun 2020 11:12:28: 25000000 INFO @ Tue, 16 Jun 2020 11:12:28: 28000000 INFO @ Tue, 16 Jun 2020 11:12:31: 32000000 INFO @ Tue, 16 Jun 2020 11:12:37: 26000000 INFO @ Tue, 16 Jun 2020 11:12:38: 29000000 INFO @ Tue, 16 Jun 2020 11:12:40: 33000000 INFO @ Tue, 16 Jun 2020 11:12:47: 27000000 INFO @ Tue, 16 Jun 2020 11:12:47: 30000000 INFO @ Tue, 16 Jun 2020 11:12:50: 34000000 INFO @ Tue, 16 Jun 2020 11:12:56: 28000000 INFO @ Tue, 16 Jun 2020 11:12:56: 31000000 INFO @ Tue, 16 Jun 2020 11:12:59: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:13:06: 32000000 INFO @ Tue, 16 Jun 2020 11:13:06: 29000000 INFO @ Tue, 16 Jun 2020 11:13:09: 36000000 INFO @ Tue, 16 Jun 2020 11:13:16: 33000000 INFO @ Tue, 16 Jun 2020 11:13:16: 30000000 INFO @ Tue, 16 Jun 2020 11:13:19: 37000000 INFO @ Tue, 16 Jun 2020 11:13:25: 34000000 INFO @ Tue, 16 Jun 2020 11:13:26: 31000000 INFO @ Tue, 16 Jun 2020 11:13:28: 38000000 INFO @ Tue, 16 Jun 2020 11:13:34: 35000000 INFO @ Tue, 16 Jun 2020 11:13:35: 32000000 INFO @ Tue, 16 Jun 2020 11:13:38: 39000000 INFO @ Tue, 16 Jun 2020 11:13:44: 36000000 INFO @ Tue, 16 Jun 2020 11:13:45: 33000000 INFO @ Tue, 16 Jun 2020 11:13:48: 40000000 INFO @ Tue, 16 Jun 2020 11:13:53: 37000000 INFO @ Tue, 16 Jun 2020 11:13:55: 34000000 INFO @ Tue, 16 Jun 2020 11:13:57: 41000000 INFO @ Tue, 16 Jun 2020 11:14:03: 38000000 INFO @ Tue, 16 Jun 2020 11:14:04: 35000000 INFO @ Tue, 16 Jun 2020 11:14:07: 42000000 INFO @ Tue, 16 Jun 2020 11:14:12: 39000000 INFO @ Tue, 16 Jun 2020 11:14:13: 36000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:14:16: 43000000 INFO @ Tue, 16 Jun 2020 11:14:21: 40000000 INFO @ Tue, 16 Jun 2020 11:14:23: 37000000 INFO @ Tue, 16 Jun 2020 11:14:26: 44000000 INFO @ Tue, 16 Jun 2020 11:14:31: 41000000 INFO @ Tue, 16 Jun 2020 11:14:32: 38000000 INFO @ Tue, 16 Jun 2020 11:14:35: 45000000 INFO @ Tue, 16 Jun 2020 11:14:40: 42000000 INFO @ Tue, 16 Jun 2020 11:14:42: 39000000 INFO @ Tue, 16 Jun 2020 11:14:44: 46000000 INFO @ Tue, 16 Jun 2020 11:14:49: 43000000 INFO @ Tue, 16 Jun 2020 11:14:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:14:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:14:49: #1 total tags in treatment: 14933233 INFO @ Tue, 16 Jun 2020 11:14:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:14:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:14:49: #1 tags after filtering in treatment: 12895870 INFO @ Tue, 16 Jun 2020 11:14:49: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:14:49: #1 finished! INFO @ Tue, 16 Jun 2020 11:14:49: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:14:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:14:50: #2 number of paired peaks: 258 WARNING @ Tue, 16 Jun 2020 11:14:50: Fewer paired peaks (258) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 258 pairs to build model! INFO @ Tue, 16 Jun 2020 11:14:50: start model_add_line... INFO @ Tue, 16 Jun 2020 11:14:50: start X-correlation... INFO @ Tue, 16 Jun 2020 11:14:50: end of X-cor INFO @ Tue, 16 Jun 2020 11:14:50: #2 finished! INFO @ Tue, 16 Jun 2020 11:14:50: #2 predicted fragment length is 201 bps INFO @ Tue, 16 Jun 2020 11:14:50: #2 alternative fragment length(s) may be 201 bps INFO @ Tue, 16 Jun 2020 11:14:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.05_model.r WARNING @ Tue, 16 Jun 2020 11:14:50: #2 Since the d (201) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:14:50: #2 You may need to consider one of the other alternative d(s): 201 WARNING @ Tue, 16 Jun 2020 11:14:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:14:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:14:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:14:51: 40000000 INFO @ Tue, 16 Jun 2020 11:14:58: 44000000 INFO @ Tue, 16 Jun 2020 11:15:00: 41000000 INFO @ Tue, 16 Jun 2020 11:15:07: 45000000 INFO @ Tue, 16 Jun 2020 11:15:09: 42000000 INFO @ Tue, 16 Jun 2020 11:15:16: 46000000 INFO @ Tue, 16 Jun 2020 11:15:16: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:15:19: 43000000 INFO @ Tue, 16 Jun 2020 11:15:20: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:15:20: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:15:20: #1 total tags in treatment: 14933233 INFO @ Tue, 16 Jun 2020 11:15:20: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:15:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:15:20: #1 tags after filtering in treatment: 12895870 INFO @ Tue, 16 Jun 2020 11:15:20: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:15:20: #1 finished! INFO @ Tue, 16 Jun 2020 11:15:20: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:15:20: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:15:21: #2 number of paired peaks: 258 WARNING @ Tue, 16 Jun 2020 11:15:21: Fewer paired peaks (258) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 258 pairs to build model! INFO @ Tue, 16 Jun 2020 11:15:21: start model_add_line... INFO @ Tue, 16 Jun 2020 11:15:21: start X-correlation... INFO @ Tue, 16 Jun 2020 11:15:21: end of X-cor INFO @ Tue, 16 Jun 2020 11:15:21: #2 finished! INFO @ Tue, 16 Jun 2020 11:15:21: #2 predicted fragment length is 201 bps INFO @ Tue, 16 Jun 2020 11:15:21: #2 alternative fragment length(s) may be 201 bps INFO @ Tue, 16 Jun 2020 11:15:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.10_model.r WARNING @ Tue, 16 Jun 2020 11:15:21: #2 Since the d (201) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:15:21: #2 You may need to consider one of the other alternative d(s): 201 WARNING @ Tue, 16 Jun 2020 11:15:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:15:21: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:15:21: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:15:27: 44000000 INFO @ Tue, 16 Jun 2020 11:15:29: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:15:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:15:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.05_summits.bed INFO @ Tue, 16 Jun 2020 11:15:29: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (414 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:15:35: 45000000 INFO @ Tue, 16 Jun 2020 11:15:43: 46000000 INFO @ Tue, 16 Jun 2020 11:15:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:15:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:15:47: #1 total tags in treatment: 14933233 INFO @ Tue, 16 Jun 2020 11:15:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:15:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:15:47: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:15:47: #1 tags after filtering in treatment: 12895870 INFO @ Tue, 16 Jun 2020 11:15:47: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:15:47: #1 finished! INFO @ Tue, 16 Jun 2020 11:15:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:15:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:15:48: #2 number of paired peaks: 258 WARNING @ Tue, 16 Jun 2020 11:15:48: Fewer paired peaks (258) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 258 pairs to build model! INFO @ Tue, 16 Jun 2020 11:15:48: start model_add_line... INFO @ Tue, 16 Jun 2020 11:15:48: start X-correlation... INFO @ Tue, 16 Jun 2020 11:15:48: end of X-cor INFO @ Tue, 16 Jun 2020 11:15:48: #2 finished! INFO @ Tue, 16 Jun 2020 11:15:48: #2 predicted fragment length is 201 bps INFO @ Tue, 16 Jun 2020 11:15:48: #2 alternative fragment length(s) may be 201 bps INFO @ Tue, 16 Jun 2020 11:15:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.20_model.r WARNING @ Tue, 16 Jun 2020 11:15:48: #2 Since the d (201) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:15:48: #2 You may need to consider one of the other alternative d(s): 201 WARNING @ Tue, 16 Jun 2020 11:15:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:15:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:15:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:15:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:15:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:15:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.10_summits.bed INFO @ Tue, 16 Jun 2020 11:15:59: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (309 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:16:14: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:16:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:16:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:16:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619549/SRX6619549.20_summits.bed INFO @ Tue, 16 Jun 2020 11:16:26: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (215 records, 4 fields): 2 millis CompletedMACS2peakCalling