Job ID = 6368849 SRX = SRX6619548 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:33:26 prefetch.2.10.7: 1) Downloading 'SRR9866061'... 2020-06-16T00:33:26 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:52:51 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:52:51 prefetch.2.10.7: 1) 'SRR9866061' was downloaded successfully 2020-06-16T00:52:51 prefetch.2.10.7: 'SRR9866061' has 0 unresolved dependencies Read 31790244 spots for SRR9866061/SRR9866061.sra Written 31790244 spots for SRR9866061/SRR9866061.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:13:53 31790244 reads; of these: 31790244 (100.00%) were paired; of these: 11416508 (35.91%) aligned concordantly 0 times 15815959 (49.75%) aligned concordantly exactly 1 time 4557777 (14.34%) aligned concordantly >1 times ---- 11416508 pairs aligned concordantly 0 times; of these: 6587691 (57.70%) aligned discordantly 1 time ---- 4828817 pairs aligned 0 times concordantly or discordantly; of these: 9657634 mates make up the pairs; of these: 6082215 (62.98%) aligned 0 times 1476389 (15.29%) aligned exactly 1 time 2099030 (21.73%) aligned >1 times 90.43% overall alignment rate Time searching: 01:13:53 Overall time: 01:13:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4558532 / 26364320 = 0.1729 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:38:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:38:04: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:38:04: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:38:13: 1000000 INFO @ Tue, 16 Jun 2020 11:38:23: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:38:33: 3000000 INFO @ Tue, 16 Jun 2020 11:38:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:38:34: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:38:34: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:38:44: 1000000 INFO @ Tue, 16 Jun 2020 11:38:44: 4000000 INFO @ Tue, 16 Jun 2020 11:38:54: 2000000 INFO @ Tue, 16 Jun 2020 11:38:55: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:39:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:39:04: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:39:04: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:39:05: 3000000 INFO @ Tue, 16 Jun 2020 11:39:06: 6000000 INFO @ Tue, 16 Jun 2020 11:39:14: 1000000 INFO @ Tue, 16 Jun 2020 11:39:17: 4000000 INFO @ Tue, 16 Jun 2020 11:39:18: 7000000 INFO @ Tue, 16 Jun 2020 11:39:25: 2000000 INFO @ Tue, 16 Jun 2020 11:39:28: 5000000 INFO @ Tue, 16 Jun 2020 11:39:29: 8000000 INFO @ Tue, 16 Jun 2020 11:39:37: 3000000 INFO @ Tue, 16 Jun 2020 11:39:39: 6000000 INFO @ Tue, 16 Jun 2020 11:39:40: 9000000 INFO @ Tue, 16 Jun 2020 11:39:48: 4000000 INFO @ Tue, 16 Jun 2020 11:39:51: 7000000 INFO @ Tue, 16 Jun 2020 11:39:51: 10000000 INFO @ Tue, 16 Jun 2020 11:40:00: 5000000 INFO @ Tue, 16 Jun 2020 11:40:02: 8000000 INFO @ Tue, 16 Jun 2020 11:40:03: 11000000 INFO @ Tue, 16 Jun 2020 11:40:11: 6000000 INFO @ Tue, 16 Jun 2020 11:40:13: 9000000 INFO @ Tue, 16 Jun 2020 11:40:14: 12000000 INFO @ Tue, 16 Jun 2020 11:40:22: 7000000 INFO @ Tue, 16 Jun 2020 11:40:25: 10000000 INFO @ Tue, 16 Jun 2020 11:40:25: 13000000 INFO @ Tue, 16 Jun 2020 11:40:34: 8000000 INFO @ Tue, 16 Jun 2020 11:40:36: 11000000 INFO @ Tue, 16 Jun 2020 11:40:37: 14000000 INFO @ Tue, 16 Jun 2020 11:40:45: 9000000 INFO @ Tue, 16 Jun 2020 11:40:48: 12000000 INFO @ Tue, 16 Jun 2020 11:40:48: 15000000 INFO @ Tue, 16 Jun 2020 11:40:57: 10000000 INFO @ Tue, 16 Jun 2020 11:40:59: 13000000 INFO @ Tue, 16 Jun 2020 11:40:59: 16000000 INFO @ Tue, 16 Jun 2020 11:41:08: 11000000 INFO @ Tue, 16 Jun 2020 11:41:11: 14000000 INFO @ Tue, 16 Jun 2020 11:41:11: 17000000 INFO @ Tue, 16 Jun 2020 11:41:20: 12000000 INFO @ Tue, 16 Jun 2020 11:41:23: 18000000 INFO @ Tue, 16 Jun 2020 11:41:23: 15000000 INFO @ Tue, 16 Jun 2020 11:41:31: 13000000 INFO @ Tue, 16 Jun 2020 11:41:34: 19000000 INFO @ Tue, 16 Jun 2020 11:41:35: 16000000 INFO @ Tue, 16 Jun 2020 11:41:43: 14000000 INFO @ Tue, 16 Jun 2020 11:41:46: 20000000 INFO @ Tue, 16 Jun 2020 11:41:47: 17000000 INFO @ Tue, 16 Jun 2020 11:41:55: 15000000 INFO @ Tue, 16 Jun 2020 11:41:57: 21000000 INFO @ Tue, 16 Jun 2020 11:41:58: 18000000 INFO @ Tue, 16 Jun 2020 11:42:07: 16000000 INFO @ Tue, 16 Jun 2020 11:42:09: 22000000 INFO @ Tue, 16 Jun 2020 11:42:10: 19000000 INFO @ Tue, 16 Jun 2020 11:42:18: 17000000 INFO @ Tue, 16 Jun 2020 11:42:21: 23000000 INFO @ Tue, 16 Jun 2020 11:42:22: 20000000 INFO @ Tue, 16 Jun 2020 11:42:30: 18000000 INFO @ Tue, 16 Jun 2020 11:42:33: 24000000 INFO @ Tue, 16 Jun 2020 11:42:34: 21000000 INFO @ Tue, 16 Jun 2020 11:42:42: 19000000 INFO @ Tue, 16 Jun 2020 11:42:45: 25000000 INFO @ Tue, 16 Jun 2020 11:42:45: 22000000 INFO @ Tue, 16 Jun 2020 11:42:53: 20000000 INFO @ Tue, 16 Jun 2020 11:42:56: 26000000 INFO @ Tue, 16 Jun 2020 11:42:57: 23000000 INFO @ Tue, 16 Jun 2020 11:43:05: 21000000 INFO @ Tue, 16 Jun 2020 11:43:08: 27000000 INFO @ Tue, 16 Jun 2020 11:43:09: 24000000 INFO @ Tue, 16 Jun 2020 11:43:17: 22000000 INFO @ Tue, 16 Jun 2020 11:43:20: 28000000 INFO @ Tue, 16 Jun 2020 11:43:21: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:43:29: 23000000 INFO @ Tue, 16 Jun 2020 11:43:31: 29000000 INFO @ Tue, 16 Jun 2020 11:43:33: 26000000 INFO @ Tue, 16 Jun 2020 11:43:41: 24000000 INFO @ Tue, 16 Jun 2020 11:43:43: 30000000 INFO @ Tue, 16 Jun 2020 11:43:44: 27000000 INFO @ Tue, 16 Jun 2020 11:43:53: 25000000 INFO @ Tue, 16 Jun 2020 11:43:54: 31000000 INFO @ Tue, 16 Jun 2020 11:43:56: 28000000 INFO @ Tue, 16 Jun 2020 11:44:05: 26000000 INFO @ Tue, 16 Jun 2020 11:44:06: 32000000 INFO @ Tue, 16 Jun 2020 11:44:08: 29000000 INFO @ Tue, 16 Jun 2020 11:44:17: 27000000 INFO @ Tue, 16 Jun 2020 11:44:18: 33000000 INFO @ Tue, 16 Jun 2020 11:44:19: 30000000 INFO @ Tue, 16 Jun 2020 11:44:29: 28000000 INFO @ Tue, 16 Jun 2020 11:44:29: 34000000 INFO @ Tue, 16 Jun 2020 11:44:31: 31000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:44:40: 29000000 INFO @ Tue, 16 Jun 2020 11:44:41: 35000000 INFO @ Tue, 16 Jun 2020 11:44:43: 32000000 INFO @ Tue, 16 Jun 2020 11:44:52: 30000000 INFO @ Tue, 16 Jun 2020 11:44:53: 36000000 INFO @ Tue, 16 Jun 2020 11:44:55: 33000000 INFO @ Tue, 16 Jun 2020 11:45:04: 31000000 INFO @ Tue, 16 Jun 2020 11:45:05: 37000000 INFO @ Tue, 16 Jun 2020 11:45:07: 34000000 INFO @ Tue, 16 Jun 2020 11:45:16: 32000000 INFO @ Tue, 16 Jun 2020 11:45:16: 38000000 INFO @ Tue, 16 Jun 2020 11:45:19: 35000000 INFO @ Tue, 16 Jun 2020 11:45:27: 33000000 INFO @ Tue, 16 Jun 2020 11:45:28: 39000000 INFO @ Tue, 16 Jun 2020 11:45:30: 36000000 INFO @ Tue, 16 Jun 2020 11:45:39: 34000000 INFO @ Tue, 16 Jun 2020 11:45:40: 40000000 INFO @ Tue, 16 Jun 2020 11:45:42: 37000000 INFO @ Tue, 16 Jun 2020 11:45:51: 35000000 INFO @ Tue, 16 Jun 2020 11:45:52: 41000000 INFO @ Tue, 16 Jun 2020 11:45:53: 38000000 INFO @ Tue, 16 Jun 2020 11:46:02: 36000000 INFO @ Tue, 16 Jun 2020 11:46:03: 42000000 INFO @ Tue, 16 Jun 2020 11:46:05: 39000000 INFO @ Tue, 16 Jun 2020 11:46:14: 37000000 INFO @ Tue, 16 Jun 2020 11:46:15: 43000000 INFO @ Tue, 16 Jun 2020 11:46:17: 40000000 INFO @ Tue, 16 Jun 2020 11:46:25: 38000000 INFO @ Tue, 16 Jun 2020 11:46:26: 44000000 INFO @ Tue, 16 Jun 2020 11:46:28: 41000000 INFO @ Tue, 16 Jun 2020 11:46:37: 39000000 INFO @ Tue, 16 Jun 2020 11:46:38: 45000000 INFO @ Tue, 16 Jun 2020 11:46:40: 42000000 INFO @ Tue, 16 Jun 2020 11:46:49: 40000000 INFO @ Tue, 16 Jun 2020 11:46:50: 46000000 INFO @ Tue, 16 Jun 2020 11:46:52: 43000000 INFO @ Tue, 16 Jun 2020 11:47:00: 41000000 INFO @ Tue, 16 Jun 2020 11:47:01: 47000000 INFO @ Tue, 16 Jun 2020 11:47:03: 44000000 INFO @ Tue, 16 Jun 2020 11:47:12: 42000000 INFO @ Tue, 16 Jun 2020 11:47:13: 48000000 INFO @ Tue, 16 Jun 2020 11:47:14: 45000000 INFO @ Tue, 16 Jun 2020 11:47:17: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:47:17: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:47:17: #1 total tags in treatment: 16702072 INFO @ Tue, 16 Jun 2020 11:47:17: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:47:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:47:17: #1 tags after filtering in treatment: 13303872 INFO @ Tue, 16 Jun 2020 11:47:17: #1 Redundant rate of treatment: 0.20 INFO @ Tue, 16 Jun 2020 11:47:17: #1 finished! INFO @ Tue, 16 Jun 2020 11:47:17: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:47:17: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:47:18: #2 number of paired peaks: 314 WARNING @ Tue, 16 Jun 2020 11:47:18: Fewer paired peaks (314) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 314 pairs to build model! INFO @ Tue, 16 Jun 2020 11:47:18: start model_add_line... INFO @ Tue, 16 Jun 2020 11:47:18: start X-correlation... INFO @ Tue, 16 Jun 2020 11:47:18: end of X-cor INFO @ Tue, 16 Jun 2020 11:47:18: #2 finished! INFO @ Tue, 16 Jun 2020 11:47:18: #2 predicted fragment length is 200 bps INFO @ Tue, 16 Jun 2020 11:47:18: #2 alternative fragment length(s) may be 4,200 bps INFO @ Tue, 16 Jun 2020 11:47:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.05_model.r WARNING @ Tue, 16 Jun 2020 11:47:18: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:47:18: #2 You may need to consider one of the other alternative d(s): 4,200 WARNING @ Tue, 16 Jun 2020 11:47:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:47:18: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:47:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:47:23: 43000000 INFO @ Tue, 16 Jun 2020 11:47:26: 46000000 INFO @ Tue, 16 Jun 2020 11:47:34: 44000000 INFO @ Tue, 16 Jun 2020 11:47:37: 47000000 INFO @ Tue, 16 Jun 2020 11:47:46: 45000000 INFO @ Tue, 16 Jun 2020 11:47:48: 48000000 INFO @ Tue, 16 Jun 2020 11:47:48: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:47:53: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:47:53: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:47:53: #1 total tags in treatment: 16702072 INFO @ Tue, 16 Jun 2020 11:47:53: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:47:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:47:53: #1 tags after filtering in treatment: 13303872 INFO @ Tue, 16 Jun 2020 11:47:53: #1 Redundant rate of treatment: 0.20 INFO @ Tue, 16 Jun 2020 11:47:53: #1 finished! INFO @ Tue, 16 Jun 2020 11:47:53: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:47:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:47:54: #2 number of paired peaks: 314 WARNING @ Tue, 16 Jun 2020 11:47:54: Fewer paired peaks (314) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 314 pairs to build model! INFO @ Tue, 16 Jun 2020 11:47:54: start model_add_line... INFO @ Tue, 16 Jun 2020 11:47:54: start X-correlation... INFO @ Tue, 16 Jun 2020 11:47:54: end of X-cor INFO @ Tue, 16 Jun 2020 11:47:54: #2 finished! INFO @ Tue, 16 Jun 2020 11:47:54: #2 predicted fragment length is 200 bps INFO @ Tue, 16 Jun 2020 11:47:54: #2 alternative fragment length(s) may be 4,200 bps INFO @ Tue, 16 Jun 2020 11:47:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.10_model.r WARNING @ Tue, 16 Jun 2020 11:47:54: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:47:54: #2 You may need to consider one of the other alternative d(s): 4,200 WARNING @ Tue, 16 Jun 2020 11:47:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:47:54: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:47:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:47:57: 46000000 INFO @ Tue, 16 Jun 2020 11:48:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:48:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:48:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.05_summits.bed INFO @ Tue, 16 Jun 2020 11:48:03: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (509 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:48:07: 47000000 INFO @ Tue, 16 Jun 2020 11:48:17: 48000000 INFO @ Tue, 16 Jun 2020 11:48:21: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:48:21: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:48:21: #1 total tags in treatment: 16702072 INFO @ Tue, 16 Jun 2020 11:48:21: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:48:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:48:21: #1 tags after filtering in treatment: 13303872 INFO @ Tue, 16 Jun 2020 11:48:21: #1 Redundant rate of treatment: 0.20 INFO @ Tue, 16 Jun 2020 11:48:21: #1 finished! INFO @ Tue, 16 Jun 2020 11:48:21: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:48:21: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:48:22: #2 number of paired peaks: 314 WARNING @ Tue, 16 Jun 2020 11:48:22: Fewer paired peaks (314) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 314 pairs to build model! INFO @ Tue, 16 Jun 2020 11:48:22: start model_add_line... INFO @ Tue, 16 Jun 2020 11:48:22: start X-correlation... INFO @ Tue, 16 Jun 2020 11:48:22: end of X-cor INFO @ Tue, 16 Jun 2020 11:48:22: #2 finished! INFO @ Tue, 16 Jun 2020 11:48:22: #2 predicted fragment length is 200 bps INFO @ Tue, 16 Jun 2020 11:48:22: #2 alternative fragment length(s) may be 4,200 bps INFO @ Tue, 16 Jun 2020 11:48:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.20_model.r WARNING @ Tue, 16 Jun 2020 11:48:22: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:48:22: #2 You may need to consider one of the other alternative d(s): 4,200 WARNING @ Tue, 16 Jun 2020 11:48:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:48:22: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:48:22: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:48:24: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:48:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:48:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:48:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.10_summits.bed INFO @ Tue, 16 Jun 2020 11:48:39: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (341 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:48:52: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:49:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:49:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:49:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619548/SRX6619548.20_summits.bed INFO @ Tue, 16 Jun 2020 11:49:07: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (210 records, 4 fields): 3 millis CompletedMACS2peakCalling