Job ID = 6368844 SRX = SRX6619543 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:57 prefetch.2.10.7: 1) Downloading 'SRR9866066'... 2020-06-16T00:30:57 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:54:45 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:54:45 prefetch.2.10.7: 1) 'SRR9866066' was downloaded successfully 2020-06-16T00:54:45 prefetch.2.10.7: 'SRR9866066' has 0 unresolved dependencies Read 48643538 spots for SRR9866066/SRR9866066.sra Written 48643538 spots for SRR9866066/SRR9866066.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:11:35 48643538 reads; of these: 48643538 (100.00%) were paired; of these: 31585182 (64.93%) aligned concordantly 0 times 14097011 (28.98%) aligned concordantly exactly 1 time 2961345 (6.09%) aligned concordantly >1 times ---- 31585182 pairs aligned concordantly 0 times; of these: 6541746 (20.71%) aligned discordantly 1 time ---- 25043436 pairs aligned 0 times concordantly or discordantly; of these: 50086872 mates make up the pairs; of these: 47291179 (94.42%) aligned 0 times 986321 (1.97%) aligned exactly 1 time 1809372 (3.61%) aligned >1 times 51.39% overall alignment rate Time searching: 01:11:35 Overall time: 01:11:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3147915 / 23385820 = 0.1346 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:38:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:38:05: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:38:05: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:38:13: 1000000 INFO @ Tue, 16 Jun 2020 11:38:21: 2000000 INFO @ Tue, 16 Jun 2020 11:38:28: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:38:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:38:35: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:38:35: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:38:36: 4000000 INFO @ Tue, 16 Jun 2020 11:38:44: 1000000 INFO @ Tue, 16 Jun 2020 11:38:45: 5000000 INFO @ Tue, 16 Jun 2020 11:38:52: 2000000 INFO @ Tue, 16 Jun 2020 11:38:53: 6000000 INFO @ Tue, 16 Jun 2020 11:39:00: 3000000 INFO @ Tue, 16 Jun 2020 11:39:02: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:39:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:39:05: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:39:05: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:39:09: 4000000 INFO @ Tue, 16 Jun 2020 11:39:11: 8000000 INFO @ Tue, 16 Jun 2020 11:39:16: 1000000 INFO @ Tue, 16 Jun 2020 11:39:19: 5000000 INFO @ Tue, 16 Jun 2020 11:39:20: 9000000 INFO @ Tue, 16 Jun 2020 11:39:26: 2000000 INFO @ Tue, 16 Jun 2020 11:39:28: 6000000 INFO @ Tue, 16 Jun 2020 11:39:29: 10000000 INFO @ Tue, 16 Jun 2020 11:39:36: 3000000 INFO @ Tue, 16 Jun 2020 11:39:37: 7000000 INFO @ Tue, 16 Jun 2020 11:39:39: 11000000 INFO @ Tue, 16 Jun 2020 11:39:47: 8000000 INFO @ Tue, 16 Jun 2020 11:39:47: 4000000 INFO @ Tue, 16 Jun 2020 11:39:48: 12000000 INFO @ Tue, 16 Jun 2020 11:39:56: 9000000 INFO @ Tue, 16 Jun 2020 11:39:57: 5000000 INFO @ Tue, 16 Jun 2020 11:39:57: 13000000 INFO @ Tue, 16 Jun 2020 11:40:06: 10000000 INFO @ Tue, 16 Jun 2020 11:40:07: 14000000 INFO @ Tue, 16 Jun 2020 11:40:08: 6000000 INFO @ Tue, 16 Jun 2020 11:40:15: 11000000 INFO @ Tue, 16 Jun 2020 11:40:16: 15000000 INFO @ Tue, 16 Jun 2020 11:40:18: 7000000 INFO @ Tue, 16 Jun 2020 11:40:25: 12000000 INFO @ Tue, 16 Jun 2020 11:40:26: 16000000 INFO @ Tue, 16 Jun 2020 11:40:29: 8000000 INFO @ Tue, 16 Jun 2020 11:40:34: 13000000 INFO @ Tue, 16 Jun 2020 11:40:36: 17000000 INFO @ Tue, 16 Jun 2020 11:40:40: 9000000 INFO @ Tue, 16 Jun 2020 11:40:44: 14000000 INFO @ Tue, 16 Jun 2020 11:40:46: 18000000 INFO @ Tue, 16 Jun 2020 11:40:51: 10000000 INFO @ Tue, 16 Jun 2020 11:40:53: 15000000 INFO @ Tue, 16 Jun 2020 11:40:56: 19000000 INFO @ Tue, 16 Jun 2020 11:41:02: 11000000 INFO @ Tue, 16 Jun 2020 11:41:03: 16000000 INFO @ Tue, 16 Jun 2020 11:41:05: 20000000 INFO @ Tue, 16 Jun 2020 11:41:12: 17000000 INFO @ Tue, 16 Jun 2020 11:41:13: 12000000 INFO @ Tue, 16 Jun 2020 11:41:15: 21000000 INFO @ Tue, 16 Jun 2020 11:41:21: 18000000 INFO @ Tue, 16 Jun 2020 11:41:24: 13000000 INFO @ Tue, 16 Jun 2020 11:41:25: 22000000 INFO @ Tue, 16 Jun 2020 11:41:31: 19000000 INFO @ Tue, 16 Jun 2020 11:41:34: 23000000 INFO @ Tue, 16 Jun 2020 11:41:35: 14000000 INFO @ Tue, 16 Jun 2020 11:41:40: 20000000 INFO @ Tue, 16 Jun 2020 11:41:44: 24000000 INFO @ Tue, 16 Jun 2020 11:41:45: 15000000 INFO @ Tue, 16 Jun 2020 11:41:50: 21000000 INFO @ Tue, 16 Jun 2020 11:41:53: 25000000 INFO @ Tue, 16 Jun 2020 11:41:56: 16000000 INFO @ Tue, 16 Jun 2020 11:41:59: 22000000 INFO @ Tue, 16 Jun 2020 11:42:03: 26000000 INFO @ Tue, 16 Jun 2020 11:42:07: 17000000 INFO @ Tue, 16 Jun 2020 11:42:08: 23000000 INFO @ Tue, 16 Jun 2020 11:42:13: 27000000 INFO @ Tue, 16 Jun 2020 11:42:17: 24000000 INFO @ Tue, 16 Jun 2020 11:42:18: 18000000 INFO @ Tue, 16 Jun 2020 11:42:22: 28000000 INFO @ Tue, 16 Jun 2020 11:42:27: 25000000 INFO @ Tue, 16 Jun 2020 11:42:29: 19000000 INFO @ Tue, 16 Jun 2020 11:42:32: 29000000 INFO @ Tue, 16 Jun 2020 11:42:36: 26000000 INFO @ Tue, 16 Jun 2020 11:42:40: 20000000 INFO @ Tue, 16 Jun 2020 11:42:41: 30000000 INFO @ Tue, 16 Jun 2020 11:42:45: 27000000 INFO @ Tue, 16 Jun 2020 11:42:51: 31000000 INFO @ Tue, 16 Jun 2020 11:42:51: 21000000 INFO @ Tue, 16 Jun 2020 11:42:54: 28000000 INFO @ Tue, 16 Jun 2020 11:43:00: 32000000 INFO @ Tue, 16 Jun 2020 11:43:02: 22000000 INFO @ Tue, 16 Jun 2020 11:43:03: 29000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:43:09: 33000000 INFO @ Tue, 16 Jun 2020 11:43:13: 30000000 INFO @ Tue, 16 Jun 2020 11:43:13: 23000000 INFO @ Tue, 16 Jun 2020 11:43:19: 34000000 INFO @ Tue, 16 Jun 2020 11:43:22: 31000000 INFO @ Tue, 16 Jun 2020 11:43:24: 24000000 INFO @ Tue, 16 Jun 2020 11:43:28: 35000000 INFO @ Tue, 16 Jun 2020 11:43:31: 32000000 INFO @ Tue, 16 Jun 2020 11:43:35: 25000000 INFO @ Tue, 16 Jun 2020 11:43:37: 36000000 INFO @ Tue, 16 Jun 2020 11:43:40: 33000000 INFO @ Tue, 16 Jun 2020 11:43:46: 26000000 INFO @ Tue, 16 Jun 2020 11:43:46: 37000000 INFO @ Tue, 16 Jun 2020 11:43:49: 34000000 INFO @ Tue, 16 Jun 2020 11:43:56: 38000000 INFO @ Tue, 16 Jun 2020 11:43:56: 27000000 INFO @ Tue, 16 Jun 2020 11:43:58: 35000000 INFO @ Tue, 16 Jun 2020 11:44:05: 39000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:44:07: 28000000 INFO @ Tue, 16 Jun 2020 11:44:07: 36000000 INFO @ Tue, 16 Jun 2020 11:44:14: 40000000 INFO @ Tue, 16 Jun 2020 11:44:17: 37000000 INFO @ Tue, 16 Jun 2020 11:44:18: 29000000 INFO @ Tue, 16 Jun 2020 11:44:23: 41000000 INFO @ Tue, 16 Jun 2020 11:44:26: 38000000 INFO @ Tue, 16 Jun 2020 11:44:28: 30000000 INFO @ Tue, 16 Jun 2020 11:44:32: 42000000 INFO @ Tue, 16 Jun 2020 11:44:35: 39000000 INFO @ Tue, 16 Jun 2020 11:44:38: 31000000 INFO @ Tue, 16 Jun 2020 11:44:41: 43000000 INFO @ Tue, 16 Jun 2020 11:44:44: 40000000 INFO @ Tue, 16 Jun 2020 11:44:48: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:44:48: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:44:48: #1 total tags in treatment: 14679488 INFO @ Tue, 16 Jun 2020 11:44:48: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:44:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:44:48: #1 tags after filtering in treatment: 12624180 INFO @ Tue, 16 Jun 2020 11:44:48: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:44:48: #1 finished! INFO @ Tue, 16 Jun 2020 11:44:48: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:44:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:44:49: 32000000 INFO @ Tue, 16 Jun 2020 11:44:49: #2 number of paired peaks: 385 WARNING @ Tue, 16 Jun 2020 11:44:49: Fewer paired peaks (385) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 385 pairs to build model! INFO @ Tue, 16 Jun 2020 11:44:49: start model_add_line... INFO @ Tue, 16 Jun 2020 11:44:49: start X-correlation... INFO @ Tue, 16 Jun 2020 11:44:49: end of X-cor INFO @ Tue, 16 Jun 2020 11:44:49: #2 finished! INFO @ Tue, 16 Jun 2020 11:44:49: #2 predicted fragment length is 214 bps INFO @ Tue, 16 Jun 2020 11:44:49: #2 alternative fragment length(s) may be 214 bps INFO @ Tue, 16 Jun 2020 11:44:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.05_model.r WARNING @ Tue, 16 Jun 2020 11:44:49: #2 Since the d (214) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:44:49: #2 You may need to consider one of the other alternative d(s): 214 WARNING @ Tue, 16 Jun 2020 11:44:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:44:49: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:44:49: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:44:53: 41000000 INFO @ Tue, 16 Jun 2020 11:44:59: 33000000 INFO @ Tue, 16 Jun 2020 11:45:02: 42000000 INFO @ Tue, 16 Jun 2020 11:45:10: 34000000 INFO @ Tue, 16 Jun 2020 11:45:11: 43000000 INFO @ Tue, 16 Jun 2020 11:45:17: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:45:17: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:45:17: #1 total tags in treatment: 14679488 INFO @ Tue, 16 Jun 2020 11:45:17: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:45:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:45:18: #1 tags after filtering in treatment: 12624180 INFO @ Tue, 16 Jun 2020 11:45:18: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:45:18: #1 finished! INFO @ Tue, 16 Jun 2020 11:45:18: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:45:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:45:18: #2 number of paired peaks: 385 WARNING @ Tue, 16 Jun 2020 11:45:18: Fewer paired peaks (385) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 385 pairs to build model! INFO @ Tue, 16 Jun 2020 11:45:18: start model_add_line... INFO @ Tue, 16 Jun 2020 11:45:19: start X-correlation... INFO @ Tue, 16 Jun 2020 11:45:19: end of X-cor INFO @ Tue, 16 Jun 2020 11:45:19: #2 finished! INFO @ Tue, 16 Jun 2020 11:45:19: #2 predicted fragment length is 214 bps INFO @ Tue, 16 Jun 2020 11:45:19: #2 alternative fragment length(s) may be 214 bps INFO @ Tue, 16 Jun 2020 11:45:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.10_model.r WARNING @ Tue, 16 Jun 2020 11:45:19: #2 Since the d (214) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:45:19: #2 You may need to consider one of the other alternative d(s): 214 WARNING @ Tue, 16 Jun 2020 11:45:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:45:19: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:45:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:45:20: 35000000 INFO @ Tue, 16 Jun 2020 11:45:21: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:45:29: 36000000 INFO @ Tue, 16 Jun 2020 11:45:37: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:45:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:45:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.05_summits.bed INFO @ Tue, 16 Jun 2020 11:45:38: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (21265 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:45:39: 37000000 INFO @ Tue, 16 Jun 2020 11:45:48: 38000000 INFO @ Tue, 16 Jun 2020 11:45:49: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:45:58: 39000000 INFO @ Tue, 16 Jun 2020 11:46:05: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:46:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:46:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.10_summits.bed INFO @ Tue, 16 Jun 2020 11:46:05: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (8536 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:46:07: 40000000 INFO @ Tue, 16 Jun 2020 11:46:16: 41000000 INFO @ Tue, 16 Jun 2020 11:46:25: 42000000 INFO @ Tue, 16 Jun 2020 11:46:34: 43000000 INFO @ Tue, 16 Jun 2020 11:46:41: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:46:41: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:46:41: #1 total tags in treatment: 14679488 INFO @ Tue, 16 Jun 2020 11:46:41: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:46:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:46:41: #1 tags after filtering in treatment: 12624180 INFO @ Tue, 16 Jun 2020 11:46:41: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:46:41: #1 finished! INFO @ Tue, 16 Jun 2020 11:46:41: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:46:41: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:46:42: #2 number of paired peaks: 385 WARNING @ Tue, 16 Jun 2020 11:46:42: Fewer paired peaks (385) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 385 pairs to build model! INFO @ Tue, 16 Jun 2020 11:46:42: start model_add_line... INFO @ Tue, 16 Jun 2020 11:46:42: start X-correlation... INFO @ Tue, 16 Jun 2020 11:46:42: end of X-cor INFO @ Tue, 16 Jun 2020 11:46:42: #2 finished! INFO @ Tue, 16 Jun 2020 11:46:42: #2 predicted fragment length is 214 bps INFO @ Tue, 16 Jun 2020 11:46:42: #2 alternative fragment length(s) may be 214 bps INFO @ Tue, 16 Jun 2020 11:46:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.20_model.r WARNING @ Tue, 16 Jun 2020 11:46:42: #2 Since the d (214) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:46:42: #2 You may need to consider one of the other alternative d(s): 214 WARNING @ Tue, 16 Jun 2020 11:46:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:46:42: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:46:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:47:13: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:47:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:47:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:47:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619543/SRX6619543.20_summits.bed INFO @ Tue, 16 Jun 2020 11:47:28: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (949 records, 4 fields): 3 millis CompletedMACS2peakCalling