Job ID = 6368842 SRX = SRX6619541 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:25:19 prefetch.2.10.7: 1) Downloading 'SRR9866068'... 2020-06-16T00:25:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:46:18 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:46:18 prefetch.2.10.7: 1) 'SRR9866068' was downloaded successfully 2020-06-16T00:46:18 prefetch.2.10.7: 'SRR9866068' has 0 unresolved dependencies Read 59558567 spots for SRR9866068/SRR9866068.sra Written 59558567 spots for SRR9866068/SRR9866068.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:53:30 59558567 reads; of these: 59558567 (100.00%) were paired; of these: 21525562 (36.14%) aligned concordantly 0 times 32183780 (54.04%) aligned concordantly exactly 1 time 5849225 (9.82%) aligned concordantly >1 times ---- 21525562 pairs aligned concordantly 0 times; of these: 11617103 (53.97%) aligned discordantly 1 time ---- 9908459 pairs aligned 0 times concordantly or discordantly; of these: 19816918 mates make up the pairs; of these: 14465495 (73.00%) aligned 0 times 2245000 (11.33%) aligned exactly 1 time 3106423 (15.68%) aligned >1 times 87.86% overall alignment rate Time searching: 01:53:30 Overall time: 01:53:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7273728 / 49255483 = 0.1477 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:25:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:25:19: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:25:19: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:25:27: 1000000 INFO @ Tue, 16 Jun 2020 12:25:35: 2000000 INFO @ Tue, 16 Jun 2020 12:25:43: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:25:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:25:49: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:25:49: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:25:51: 4000000 INFO @ Tue, 16 Jun 2020 12:25:58: 1000000 INFO @ Tue, 16 Jun 2020 12:26:00: 5000000 INFO @ Tue, 16 Jun 2020 12:26:07: 2000000 INFO @ Tue, 16 Jun 2020 12:26:08: 6000000 INFO @ Tue, 16 Jun 2020 12:26:16: 3000000 INFO @ Tue, 16 Jun 2020 12:26:17: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:26:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:26:19: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:26:19: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:26:25: 8000000 INFO @ Tue, 16 Jun 2020 12:26:26: 4000000 INFO @ Tue, 16 Jun 2020 12:26:27: 1000000 INFO @ Tue, 16 Jun 2020 12:26:34: 9000000 INFO @ Tue, 16 Jun 2020 12:26:35: 5000000 INFO @ Tue, 16 Jun 2020 12:26:36: 2000000 INFO @ Tue, 16 Jun 2020 12:26:42: 10000000 INFO @ Tue, 16 Jun 2020 12:26:44: 6000000 INFO @ Tue, 16 Jun 2020 12:26:45: 3000000 INFO @ Tue, 16 Jun 2020 12:26:51: 11000000 INFO @ Tue, 16 Jun 2020 12:26:53: 4000000 INFO @ Tue, 16 Jun 2020 12:26:53: 7000000 INFO @ Tue, 16 Jun 2020 12:27:00: 12000000 INFO @ Tue, 16 Jun 2020 12:27:02: 5000000 INFO @ Tue, 16 Jun 2020 12:27:03: 8000000 INFO @ Tue, 16 Jun 2020 12:27:09: 13000000 INFO @ Tue, 16 Jun 2020 12:27:11: 6000000 INFO @ Tue, 16 Jun 2020 12:27:12: 9000000 INFO @ Tue, 16 Jun 2020 12:27:18: 14000000 INFO @ Tue, 16 Jun 2020 12:27:19: 7000000 INFO @ Tue, 16 Jun 2020 12:27:21: 10000000 INFO @ Tue, 16 Jun 2020 12:27:26: 15000000 INFO @ Tue, 16 Jun 2020 12:27:28: 8000000 INFO @ Tue, 16 Jun 2020 12:27:30: 11000000 INFO @ Tue, 16 Jun 2020 12:27:35: 16000000 INFO @ Tue, 16 Jun 2020 12:27:36: 9000000 INFO @ Tue, 16 Jun 2020 12:27:39: 12000000 INFO @ Tue, 16 Jun 2020 12:27:44: 17000000 INFO @ Tue, 16 Jun 2020 12:27:45: 10000000 INFO @ Tue, 16 Jun 2020 12:27:48: 13000000 INFO @ Tue, 16 Jun 2020 12:27:53: 18000000 INFO @ Tue, 16 Jun 2020 12:27:54: 11000000 INFO @ Tue, 16 Jun 2020 12:27:57: 14000000 INFO @ Tue, 16 Jun 2020 12:28:01: 19000000 INFO @ Tue, 16 Jun 2020 12:28:02: 12000000 INFO @ Tue, 16 Jun 2020 12:28:06: 15000000 INFO @ Tue, 16 Jun 2020 12:28:10: 20000000 INFO @ Tue, 16 Jun 2020 12:28:11: 13000000 INFO @ Tue, 16 Jun 2020 12:28:15: 16000000 INFO @ Tue, 16 Jun 2020 12:28:19: 21000000 INFO @ Tue, 16 Jun 2020 12:28:19: 14000000 INFO @ Tue, 16 Jun 2020 12:28:23: 17000000 INFO @ Tue, 16 Jun 2020 12:28:28: 22000000 INFO @ Tue, 16 Jun 2020 12:28:28: 15000000 INFO @ Tue, 16 Jun 2020 12:28:32: 18000000 INFO @ Tue, 16 Jun 2020 12:28:36: 16000000 INFO @ Tue, 16 Jun 2020 12:28:37: 23000000 INFO @ Tue, 16 Jun 2020 12:28:41: 19000000 INFO @ Tue, 16 Jun 2020 12:28:45: 17000000 INFO @ Tue, 16 Jun 2020 12:28:45: 24000000 INFO @ Tue, 16 Jun 2020 12:28:50: 20000000 INFO @ Tue, 16 Jun 2020 12:28:54: 18000000 INFO @ Tue, 16 Jun 2020 12:28:54: 25000000 INFO @ Tue, 16 Jun 2020 12:28:58: 21000000 INFO @ Tue, 16 Jun 2020 12:29:02: 19000000 INFO @ Tue, 16 Jun 2020 12:29:04: 26000000 INFO @ Tue, 16 Jun 2020 12:29:07: 22000000 INFO @ Tue, 16 Jun 2020 12:29:11: 20000000 INFO @ Tue, 16 Jun 2020 12:29:13: 27000000 INFO @ Tue, 16 Jun 2020 12:29:16: 23000000 INFO @ Tue, 16 Jun 2020 12:29:20: 21000000 INFO @ Tue, 16 Jun 2020 12:29:22: 28000000 INFO @ Tue, 16 Jun 2020 12:29:25: 24000000 INFO @ Tue, 16 Jun 2020 12:29:28: 22000000 INFO @ Tue, 16 Jun 2020 12:29:32: 29000000 INFO @ Tue, 16 Jun 2020 12:29:34: 25000000 INFO @ Tue, 16 Jun 2020 12:29:37: 23000000 INFO @ Tue, 16 Jun 2020 12:29:40: 30000000 INFO @ Tue, 16 Jun 2020 12:29:44: 26000000 INFO @ Tue, 16 Jun 2020 12:29:46: 24000000 INFO @ Tue, 16 Jun 2020 12:29:50: 31000000 INFO @ Tue, 16 Jun 2020 12:29:53: 27000000 INFO @ Tue, 16 Jun 2020 12:29:55: 25000000 INFO @ Tue, 16 Jun 2020 12:29:59: 32000000 INFO @ Tue, 16 Jun 2020 12:30:02: 28000000 INFO @ Tue, 16 Jun 2020 12:30:05: 26000000 INFO @ Tue, 16 Jun 2020 12:30:08: 33000000 INFO @ Tue, 16 Jun 2020 12:30:12: 29000000 INFO @ Tue, 16 Jun 2020 12:30:14: 27000000 INFO @ Tue, 16 Jun 2020 12:30:18: 34000000 INFO @ Tue, 16 Jun 2020 12:30:21: 30000000 INFO @ Tue, 16 Jun 2020 12:30:23: 28000000 INFO @ Tue, 16 Jun 2020 12:30:27: 35000000 INFO @ Tue, 16 Jun 2020 12:30:31: 31000000 INFO @ Tue, 16 Jun 2020 12:30:33: 29000000 INFO @ Tue, 16 Jun 2020 12:30:37: 36000000 INFO @ Tue, 16 Jun 2020 12:30:41: 32000000 INFO @ Tue, 16 Jun 2020 12:30:43: 30000000 INFO @ Tue, 16 Jun 2020 12:30:47: 37000000 INFO @ Tue, 16 Jun 2020 12:30:51: 33000000 INFO @ Tue, 16 Jun 2020 12:30:53: 31000000 INFO @ Tue, 16 Jun 2020 12:30:57: 38000000 INFO @ Tue, 16 Jun 2020 12:31:01: 34000000 INFO @ Tue, 16 Jun 2020 12:31:03: 32000000 INFO @ Tue, 16 Jun 2020 12:31:07: 39000000 INFO @ Tue, 16 Jun 2020 12:31:10: 35000000 INFO @ Tue, 16 Jun 2020 12:31:13: 33000000 INFO @ Tue, 16 Jun 2020 12:31:16: 40000000 INFO @ Tue, 16 Jun 2020 12:31:20: 36000000 INFO @ Tue, 16 Jun 2020 12:31:23: 34000000 INFO @ Tue, 16 Jun 2020 12:31:26: 41000000 INFO @ Tue, 16 Jun 2020 12:31:29: 37000000 INFO @ Tue, 16 Jun 2020 12:31:33: 35000000 INFO @ Tue, 16 Jun 2020 12:31:36: 42000000 INFO @ Tue, 16 Jun 2020 12:31:39: 38000000 INFO @ Tue, 16 Jun 2020 12:31:43: 36000000 INFO @ Tue, 16 Jun 2020 12:31:46: 43000000 INFO @ Tue, 16 Jun 2020 12:31:48: 39000000 INFO @ Tue, 16 Jun 2020 12:31:52: 37000000 INFO @ Tue, 16 Jun 2020 12:31:56: 44000000 INFO @ Tue, 16 Jun 2020 12:31:58: 40000000 INFO @ Tue, 16 Jun 2020 12:32:02: 38000000 INFO @ Tue, 16 Jun 2020 12:32:06: 45000000 INFO @ Tue, 16 Jun 2020 12:32:08: 41000000 INFO @ Tue, 16 Jun 2020 12:32:12: 39000000 INFO @ Tue, 16 Jun 2020 12:32:16: 46000000 INFO @ Tue, 16 Jun 2020 12:32:18: 42000000 INFO @ Tue, 16 Jun 2020 12:32:22: 40000000 INFO @ Tue, 16 Jun 2020 12:32:26: 47000000 INFO @ Tue, 16 Jun 2020 12:32:27: 43000000 INFO @ Tue, 16 Jun 2020 12:32:31: 41000000 INFO @ Tue, 16 Jun 2020 12:32:35: 48000000 INFO @ Tue, 16 Jun 2020 12:32:37: 44000000 INFO @ Tue, 16 Jun 2020 12:32:41: 42000000 INFO @ Tue, 16 Jun 2020 12:32:45: 49000000 INFO @ Tue, 16 Jun 2020 12:32:47: 45000000 INFO @ Tue, 16 Jun 2020 12:32:51: 43000000 INFO @ Tue, 16 Jun 2020 12:32:55: 50000000 INFO @ Tue, 16 Jun 2020 12:32:56: 46000000 INFO @ Tue, 16 Jun 2020 12:33:00: 44000000 INFO @ Tue, 16 Jun 2020 12:33:04: 51000000 INFO @ Tue, 16 Jun 2020 12:33:05: 47000000 INFO @ Tue, 16 Jun 2020 12:33:10: 45000000 INFO @ Tue, 16 Jun 2020 12:33:14: 52000000 INFO @ Tue, 16 Jun 2020 12:33:15: 48000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:33:19: 46000000 INFO @ Tue, 16 Jun 2020 12:33:23: 53000000 INFO @ Tue, 16 Jun 2020 12:33:24: 49000000 INFO @ Tue, 16 Jun 2020 12:33:29: 47000000 INFO @ Tue, 16 Jun 2020 12:33:33: 54000000 INFO @ Tue, 16 Jun 2020 12:33:33: 50000000 INFO @ Tue, 16 Jun 2020 12:33:38: 48000000 INFO @ Tue, 16 Jun 2020 12:33:42: 55000000 INFO @ Tue, 16 Jun 2020 12:33:43: 51000000 INFO @ Tue, 16 Jun 2020 12:33:48: 49000000 INFO @ Tue, 16 Jun 2020 12:33:51: 56000000 INFO @ Tue, 16 Jun 2020 12:33:52: 52000000 INFO @ Tue, 16 Jun 2020 12:33:57: 50000000 INFO @ Tue, 16 Jun 2020 12:34:00: 57000000 INFO @ Tue, 16 Jun 2020 12:34:01: 53000000 INFO @ Tue, 16 Jun 2020 12:34:06: 51000000 INFO @ Tue, 16 Jun 2020 12:34:09: 58000000 INFO @ Tue, 16 Jun 2020 12:34:10: 54000000 INFO @ Tue, 16 Jun 2020 12:34:15: 52000000 INFO @ Tue, 16 Jun 2020 12:34:18: 59000000 INFO @ Tue, 16 Jun 2020 12:34:19: 55000000 INFO @ Tue, 16 Jun 2020 12:34:24: 53000000 INFO @ Tue, 16 Jun 2020 12:34:27: 60000000 INFO @ Tue, 16 Jun 2020 12:34:28: 56000000 INFO @ Tue, 16 Jun 2020 12:34:33: 54000000 INFO @ Tue, 16 Jun 2020 12:34:36: 61000000 INFO @ Tue, 16 Jun 2020 12:34:37: 57000000 INFO @ Tue, 16 Jun 2020 12:34:42: 55000000 INFO @ Tue, 16 Jun 2020 12:34:45: 58000000 INFO @ Tue, 16 Jun 2020 12:34:46: 62000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:34:51: 56000000 INFO @ Tue, 16 Jun 2020 12:34:54: 63000000 INFO @ Tue, 16 Jun 2020 12:34:54: 59000000 INFO @ Tue, 16 Jun 2020 12:35:00: 57000000 INFO @ Tue, 16 Jun 2020 12:35:03: 64000000 INFO @ Tue, 16 Jun 2020 12:35:03: 60000000 INFO @ Tue, 16 Jun 2020 12:35:08: 58000000 INFO @ Tue, 16 Jun 2020 12:35:11: 65000000 INFO @ Tue, 16 Jun 2020 12:35:12: 61000000 INFO @ Tue, 16 Jun 2020 12:35:17: 59000000 INFO @ Tue, 16 Jun 2020 12:35:20: 66000000 INFO @ Tue, 16 Jun 2020 12:35:21: 62000000 INFO @ Tue, 16 Jun 2020 12:35:26: 60000000 INFO @ Tue, 16 Jun 2020 12:35:29: 67000000 INFO @ Tue, 16 Jun 2020 12:35:29: 63000000 INFO @ Tue, 16 Jun 2020 12:35:34: 61000000 INFO @ Tue, 16 Jun 2020 12:35:38: 68000000 INFO @ Tue, 16 Jun 2020 12:35:38: 64000000 INFO @ Tue, 16 Jun 2020 12:35:43: 62000000 INFO @ Tue, 16 Jun 2020 12:35:46: 69000000 INFO @ Tue, 16 Jun 2020 12:35:47: 65000000 INFO @ Tue, 16 Jun 2020 12:35:52: 63000000 INFO @ Tue, 16 Jun 2020 12:35:55: 70000000 INFO @ Tue, 16 Jun 2020 12:35:55: 66000000 INFO @ Tue, 16 Jun 2020 12:36:00: 64000000 INFO @ Tue, 16 Jun 2020 12:36:03: 71000000 INFO @ Tue, 16 Jun 2020 12:36:04: 67000000 INFO @ Tue, 16 Jun 2020 12:36:09: 65000000 INFO @ Tue, 16 Jun 2020 12:36:12: 72000000 INFO @ Tue, 16 Jun 2020 12:36:13: 68000000 INFO @ Tue, 16 Jun 2020 12:36:17: 66000000 INFO @ Tue, 16 Jun 2020 12:36:20: 73000000 INFO @ Tue, 16 Jun 2020 12:36:21: 69000000 INFO @ Tue, 16 Jun 2020 12:36:26: 67000000 INFO @ Tue, 16 Jun 2020 12:36:28: 74000000 INFO @ Tue, 16 Jun 2020 12:36:30: 70000000 INFO @ Tue, 16 Jun 2020 12:36:35: 68000000 INFO @ Tue, 16 Jun 2020 12:36:37: 75000000 INFO @ Tue, 16 Jun 2020 12:36:39: 71000000 INFO @ Tue, 16 Jun 2020 12:36:44: 69000000 INFO @ Tue, 16 Jun 2020 12:36:45: 76000000 INFO @ Tue, 16 Jun 2020 12:36:47: 72000000 INFO @ Tue, 16 Jun 2020 12:36:52: 70000000 INFO @ Tue, 16 Jun 2020 12:36:54: 77000000 INFO @ Tue, 16 Jun 2020 12:36:56: 73000000 INFO @ Tue, 16 Jun 2020 12:37:01: 71000000 INFO @ Tue, 16 Jun 2020 12:37:03: 78000000 INFO @ Tue, 16 Jun 2020 12:37:04: 74000000 INFO @ Tue, 16 Jun 2020 12:37:09: 72000000 INFO @ Tue, 16 Jun 2020 12:37:11: 79000000 INFO @ Tue, 16 Jun 2020 12:37:13: 75000000 INFO @ Tue, 16 Jun 2020 12:37:17: 73000000 INFO @ Tue, 16 Jun 2020 12:37:20: 80000000 INFO @ Tue, 16 Jun 2020 12:37:21: 76000000 INFO @ Tue, 16 Jun 2020 12:37:26: 74000000 INFO @ Tue, 16 Jun 2020 12:37:28: 81000000 INFO @ Tue, 16 Jun 2020 12:37:30: 77000000 INFO @ Tue, 16 Jun 2020 12:37:34: 75000000 INFO @ Tue, 16 Jun 2020 12:37:37: 82000000 INFO @ Tue, 16 Jun 2020 12:37:39: 78000000 INFO @ Tue, 16 Jun 2020 12:37:42: 76000000 INFO @ Tue, 16 Jun 2020 12:37:46: 83000000 INFO @ Tue, 16 Jun 2020 12:37:48: 79000000 INFO @ Tue, 16 Jun 2020 12:37:51: 77000000 INFO @ Tue, 16 Jun 2020 12:37:54: 84000000 INFO @ Tue, 16 Jun 2020 12:37:56: 80000000 INFO @ Tue, 16 Jun 2020 12:38:00: 78000000 INFO @ Tue, 16 Jun 2020 12:38:02: 85000000 INFO @ Tue, 16 Jun 2020 12:38:05: 81000000 INFO @ Tue, 16 Jun 2020 12:38:08: 79000000 INFO @ Tue, 16 Jun 2020 12:38:11: 86000000 INFO @ Tue, 16 Jun 2020 12:38:14: 82000000 INFO @ Tue, 16 Jun 2020 12:38:17: 80000000 INFO @ Tue, 16 Jun 2020 12:38:19: 87000000 INFO @ Tue, 16 Jun 2020 12:38:22: 83000000 INFO @ Tue, 16 Jun 2020 12:38:25: 81000000 INFO @ Tue, 16 Jun 2020 12:38:28: 88000000 INFO @ Tue, 16 Jun 2020 12:38:31: 84000000 INFO @ Tue, 16 Jun 2020 12:38:34: 82000000 INFO @ Tue, 16 Jun 2020 12:38:37: 89000000 INFO @ Tue, 16 Jun 2020 12:38:40: 85000000 INFO @ Tue, 16 Jun 2020 12:38:42: 83000000 INFO @ Tue, 16 Jun 2020 12:38:45: 90000000 INFO @ Tue, 16 Jun 2020 12:38:46: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:38:46: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:38:46: #1 total tags in treatment: 32208812 INFO @ Tue, 16 Jun 2020 12:38:46: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:38:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:38:47: #1 tags after filtering in treatment: 25353416 INFO @ Tue, 16 Jun 2020 12:38:47: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 12:38:47: #1 finished! INFO @ Tue, 16 Jun 2020 12:38:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:38:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:38:48: 86000000 INFO @ Tue, 16 Jun 2020 12:38:48: #2 number of paired peaks: 161 WARNING @ Tue, 16 Jun 2020 12:38:48: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Tue, 16 Jun 2020 12:38:48: start model_add_line... INFO @ Tue, 16 Jun 2020 12:38:49: start X-correlation... INFO @ Tue, 16 Jun 2020 12:38:49: end of X-cor INFO @ Tue, 16 Jun 2020 12:38:49: #2 finished! INFO @ Tue, 16 Jun 2020 12:38:49: #2 predicted fragment length is 185 bps INFO @ Tue, 16 Jun 2020 12:38:49: #2 alternative fragment length(s) may be 3,169,185,208 bps INFO @ Tue, 16 Jun 2020 12:38:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.05_model.r WARNING @ Tue, 16 Jun 2020 12:38:49: #2 Since the d (185) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:38:49: #2 You may need to consider one of the other alternative d(s): 3,169,185,208 WARNING @ Tue, 16 Jun 2020 12:38:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:38:49: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:38:49: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:38:51: 84000000 INFO @ Tue, 16 Jun 2020 12:38:57: 87000000 INFO @ Tue, 16 Jun 2020 12:38:59: 85000000 INFO @ Tue, 16 Jun 2020 12:39:06: 88000000 INFO @ Tue, 16 Jun 2020 12:39:07: 86000000 INFO @ Tue, 16 Jun 2020 12:39:15: 89000000 INFO @ Tue, 16 Jun 2020 12:39:16: 87000000 INFO @ Tue, 16 Jun 2020 12:39:24: 90000000 INFO @ Tue, 16 Jun 2020 12:39:24: 88000000 INFO @ Tue, 16 Jun 2020 12:39:25: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:39:25: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:39:25: #1 total tags in treatment: 32208812 INFO @ Tue, 16 Jun 2020 12:39:25: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:39:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:39:26: #1 tags after filtering in treatment: 25353416 INFO @ Tue, 16 Jun 2020 12:39:26: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 12:39:26: #1 finished! INFO @ Tue, 16 Jun 2020 12:39:26: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:39:26: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:39:27: #2 number of paired peaks: 161 WARNING @ Tue, 16 Jun 2020 12:39:27: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Tue, 16 Jun 2020 12:39:27: start model_add_line... INFO @ Tue, 16 Jun 2020 12:39:27: start X-correlation... INFO @ Tue, 16 Jun 2020 12:39:27: end of X-cor INFO @ Tue, 16 Jun 2020 12:39:27: #2 finished! INFO @ Tue, 16 Jun 2020 12:39:27: #2 predicted fragment length is 185 bps INFO @ Tue, 16 Jun 2020 12:39:27: #2 alternative fragment length(s) may be 3,169,185,208 bps INFO @ Tue, 16 Jun 2020 12:39:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.10_model.r WARNING @ Tue, 16 Jun 2020 12:39:27: #2 Since the d (185) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:39:27: #2 You may need to consider one of the other alternative d(s): 3,169,185,208 WARNING @ Tue, 16 Jun 2020 12:39:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:39:27: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:39:27: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:39:33: 89000000 INFO @ Tue, 16 Jun 2020 12:39:34: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:39:41: 90000000 INFO @ Tue, 16 Jun 2020 12:39:42: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:39:42: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:39:42: #1 total tags in treatment: 32208812 INFO @ Tue, 16 Jun 2020 12:39:42: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:39:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:39:42: #1 tags after filtering in treatment: 25353416 INFO @ Tue, 16 Jun 2020 12:39:42: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 12:39:42: #1 finished! INFO @ Tue, 16 Jun 2020 12:39:42: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:39:42: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:39:44: #2 number of paired peaks: 161 WARNING @ Tue, 16 Jun 2020 12:39:44: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Tue, 16 Jun 2020 12:39:44: start model_add_line... INFO @ Tue, 16 Jun 2020 12:39:44: start X-correlation... INFO @ Tue, 16 Jun 2020 12:39:44: end of X-cor INFO @ Tue, 16 Jun 2020 12:39:44: #2 finished! INFO @ Tue, 16 Jun 2020 12:39:44: #2 predicted fragment length is 185 bps INFO @ Tue, 16 Jun 2020 12:39:44: #2 alternative fragment length(s) may be 3,169,185,208 bps INFO @ Tue, 16 Jun 2020 12:39:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.20_model.r WARNING @ Tue, 16 Jun 2020 12:39:44: #2 Since the d (185) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:39:44: #2 You may need to consider one of the other alternative d(s): 3,169,185,208 WARNING @ Tue, 16 Jun 2020 12:39:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:39:44: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:39:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:39:57: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:39:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:39:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.05_summits.bed INFO @ Tue, 16 Jun 2020 12:39:58: Done! pass1 - making usageList (7 chroms): 5 millis pass2 - checking and writing primary data (31694 records, 4 fields): 27 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:40:11: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:40:28: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:40:33: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:40:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:40:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.10_summits.bed INFO @ Tue, 16 Jun 2020 12:40:34: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (15144 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:40:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:40:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:40:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619541/SRX6619541.20_summits.bed INFO @ Tue, 16 Jun 2020 12:40:50: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (1841 records, 4 fields): 4 millis CompletedMACS2peakCalling