Job ID = 6368841 SRX = SRX6619540 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:29:04 prefetch.2.10.7: 1) Downloading 'SRR9866069'... 2020-06-16T00:29:04 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:47:03 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:47:03 prefetch.2.10.7: 1) 'SRR9866069' was downloaded successfully 2020-06-16T00:47:03 prefetch.2.10.7: 'SRR9866069' has 0 unresolved dependencies Read 54011278 spots for SRR9866069/SRR9866069.sra Written 54011278 spots for SRR9866069/SRR9866069.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:14:41 54011278 reads; of these: 54011278 (100.00%) were paired; of these: 22096633 (40.91%) aligned concordantly 0 times 24799730 (45.92%) aligned concordantly exactly 1 time 7114915 (13.17%) aligned concordantly >1 times ---- 22096633 pairs aligned concordantly 0 times; of these: 14421576 (65.27%) aligned discordantly 1 time ---- 7675057 pairs aligned 0 times concordantly or discordantly; of these: 15350114 mates make up the pairs; of these: 5573072 (36.31%) aligned 0 times 3376698 (22.00%) aligned exactly 1 time 6400344 (41.70%) aligned >1 times 94.84% overall alignment rate Time searching: 02:14:41 Overall time: 02:14:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7936658 / 46131486 = 0.1720 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:49:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:49:57: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:49:57: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:50:07: 1000000 INFO @ Tue, 16 Jun 2020 12:50:17: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:50:26: 3000000 INFO @ Tue, 16 Jun 2020 12:50:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:50:27: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:50:27: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:50:37: 4000000 INFO @ Tue, 16 Jun 2020 12:50:38: 1000000 INFO @ Tue, 16 Jun 2020 12:50:48: 5000000 INFO @ Tue, 16 Jun 2020 12:50:49: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:50:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:50:58: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:50:58: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:50:58: 6000000 INFO @ Tue, 16 Jun 2020 12:50:59: 3000000 INFO @ Tue, 16 Jun 2020 12:51:08: 1000000 INFO @ Tue, 16 Jun 2020 12:51:09: 7000000 INFO @ Tue, 16 Jun 2020 12:51:10: 4000000 INFO @ Tue, 16 Jun 2020 12:51:17: 2000000 INFO @ Tue, 16 Jun 2020 12:51:20: 8000000 INFO @ Tue, 16 Jun 2020 12:51:21: 5000000 INFO @ Tue, 16 Jun 2020 12:51:27: 3000000 INFO @ Tue, 16 Jun 2020 12:51:31: 9000000 INFO @ Tue, 16 Jun 2020 12:51:31: 6000000 INFO @ Tue, 16 Jun 2020 12:51:36: 4000000 INFO @ Tue, 16 Jun 2020 12:51:41: 10000000 INFO @ Tue, 16 Jun 2020 12:51:42: 7000000 INFO @ Tue, 16 Jun 2020 12:51:46: 5000000 INFO @ Tue, 16 Jun 2020 12:51:51: 11000000 INFO @ Tue, 16 Jun 2020 12:51:53: 8000000 INFO @ Tue, 16 Jun 2020 12:51:55: 6000000 INFO @ Tue, 16 Jun 2020 12:52:01: 12000000 INFO @ Tue, 16 Jun 2020 12:52:03: 9000000 INFO @ Tue, 16 Jun 2020 12:52:04: 7000000 INFO @ Tue, 16 Jun 2020 12:52:11: 13000000 INFO @ Tue, 16 Jun 2020 12:52:14: 10000000 INFO @ Tue, 16 Jun 2020 12:52:14: 8000000 INFO @ Tue, 16 Jun 2020 12:52:21: 14000000 INFO @ Tue, 16 Jun 2020 12:52:23: 9000000 INFO @ Tue, 16 Jun 2020 12:52:24: 11000000 INFO @ Tue, 16 Jun 2020 12:52:31: 15000000 INFO @ Tue, 16 Jun 2020 12:52:32: 10000000 INFO @ Tue, 16 Jun 2020 12:52:34: 12000000 INFO @ Tue, 16 Jun 2020 12:52:41: 16000000 INFO @ Tue, 16 Jun 2020 12:52:42: 11000000 INFO @ Tue, 16 Jun 2020 12:52:45: 13000000 INFO @ Tue, 16 Jun 2020 12:52:51: 12000000 INFO @ Tue, 16 Jun 2020 12:52:51: 17000000 INFO @ Tue, 16 Jun 2020 12:52:55: 14000000 INFO @ Tue, 16 Jun 2020 12:53:00: 13000000 INFO @ Tue, 16 Jun 2020 12:53:01: 18000000 INFO @ Tue, 16 Jun 2020 12:53:05: 15000000 INFO @ Tue, 16 Jun 2020 12:53:09: 14000000 INFO @ Tue, 16 Jun 2020 12:53:11: 19000000 INFO @ Tue, 16 Jun 2020 12:53:15: 16000000 INFO @ Tue, 16 Jun 2020 12:53:18: 15000000 INFO @ Tue, 16 Jun 2020 12:53:21: 20000000 INFO @ Tue, 16 Jun 2020 12:53:25: 17000000 INFO @ Tue, 16 Jun 2020 12:53:27: 16000000 INFO @ Tue, 16 Jun 2020 12:53:31: 21000000 INFO @ Tue, 16 Jun 2020 12:53:36: 18000000 INFO @ Tue, 16 Jun 2020 12:53:36: 17000000 INFO @ Tue, 16 Jun 2020 12:53:41: 22000000 INFO @ Tue, 16 Jun 2020 12:53:45: 18000000 INFO @ Tue, 16 Jun 2020 12:53:46: 19000000 INFO @ Tue, 16 Jun 2020 12:53:51: 23000000 INFO @ Tue, 16 Jun 2020 12:53:54: 19000000 INFO @ Tue, 16 Jun 2020 12:53:56: 20000000 INFO @ Tue, 16 Jun 2020 12:54:01: 24000000 INFO @ Tue, 16 Jun 2020 12:54:03: 20000000 INFO @ Tue, 16 Jun 2020 12:54:07: 21000000 INFO @ Tue, 16 Jun 2020 12:54:11: 25000000 INFO @ Tue, 16 Jun 2020 12:54:12: 21000000 INFO @ Tue, 16 Jun 2020 12:54:18: 22000000 INFO @ Tue, 16 Jun 2020 12:54:21: 26000000 INFO @ Tue, 16 Jun 2020 12:54:22: 22000000 INFO @ Tue, 16 Jun 2020 12:54:28: 23000000 INFO @ Tue, 16 Jun 2020 12:54:31: 23000000 INFO @ Tue, 16 Jun 2020 12:54:31: 27000000 INFO @ Tue, 16 Jun 2020 12:54:38: 24000000 INFO @ Tue, 16 Jun 2020 12:54:40: 24000000 INFO @ Tue, 16 Jun 2020 12:54:41: 28000000 INFO @ Tue, 16 Jun 2020 12:54:49: 25000000 INFO @ Tue, 16 Jun 2020 12:54:49: 25000000 INFO @ Tue, 16 Jun 2020 12:54:51: 29000000 INFO @ Tue, 16 Jun 2020 12:54:59: 26000000 INFO @ Tue, 16 Jun 2020 12:55:00: 26000000 INFO @ Tue, 16 Jun 2020 12:55:02: 30000000 INFO @ Tue, 16 Jun 2020 12:55:09: 27000000 INFO @ Tue, 16 Jun 2020 12:55:10: 27000000 INFO @ Tue, 16 Jun 2020 12:55:12: 31000000 INFO @ Tue, 16 Jun 2020 12:55:19: 28000000 INFO @ Tue, 16 Jun 2020 12:55:20: 28000000 INFO @ Tue, 16 Jun 2020 12:55:22: 32000000 INFO @ Tue, 16 Jun 2020 12:55:29: 29000000 INFO @ Tue, 16 Jun 2020 12:55:30: 29000000 INFO @ Tue, 16 Jun 2020 12:55:32: 33000000 INFO @ Tue, 16 Jun 2020 12:55:39: 30000000 INFO @ Tue, 16 Jun 2020 12:55:40: 30000000 INFO @ Tue, 16 Jun 2020 12:55:42: 34000000 INFO @ Tue, 16 Jun 2020 12:55:49: 31000000 INFO @ Tue, 16 Jun 2020 12:55:50: 31000000 INFO @ Tue, 16 Jun 2020 12:55:52: 35000000 INFO @ Tue, 16 Jun 2020 12:55:59: 32000000 INFO @ Tue, 16 Jun 2020 12:56:00: 32000000 INFO @ Tue, 16 Jun 2020 12:56:03: 36000000 INFO @ Tue, 16 Jun 2020 12:56:09: 33000000 INFO @ Tue, 16 Jun 2020 12:56:10: 33000000 INFO @ Tue, 16 Jun 2020 12:56:13: 37000000 INFO @ Tue, 16 Jun 2020 12:56:20: 34000000 INFO @ Tue, 16 Jun 2020 12:56:21: 34000000 INFO @ Tue, 16 Jun 2020 12:56:23: 38000000 INFO @ Tue, 16 Jun 2020 12:56:30: 35000000 INFO @ Tue, 16 Jun 2020 12:56:31: 35000000 INFO @ Tue, 16 Jun 2020 12:56:33: 39000000 INFO @ Tue, 16 Jun 2020 12:56:41: 36000000 INFO @ Tue, 16 Jun 2020 12:56:42: 36000000 INFO @ Tue, 16 Jun 2020 12:56:43: 40000000 INFO @ Tue, 16 Jun 2020 12:56:52: 37000000 INFO @ Tue, 16 Jun 2020 12:56:53: 37000000 INFO @ Tue, 16 Jun 2020 12:56:54: 41000000 INFO @ Tue, 16 Jun 2020 12:57:03: 38000000 INFO @ Tue, 16 Jun 2020 12:57:03: 38000000 INFO @ Tue, 16 Jun 2020 12:57:04: 42000000 INFO @ Tue, 16 Jun 2020 12:57:14: 39000000 INFO @ Tue, 16 Jun 2020 12:57:15: 39000000 INFO @ Tue, 16 Jun 2020 12:57:15: 43000000 INFO @ Tue, 16 Jun 2020 12:57:26: 44000000 INFO @ Tue, 16 Jun 2020 12:57:26: 40000000 INFO @ Tue, 16 Jun 2020 12:57:26: 40000000 INFO @ Tue, 16 Jun 2020 12:57:36: 45000000 INFO @ Tue, 16 Jun 2020 12:57:39: 41000000 INFO @ Tue, 16 Jun 2020 12:57:39: 41000000 INFO @ Tue, 16 Jun 2020 12:57:47: 46000000 INFO @ Tue, 16 Jun 2020 12:57:49: 42000000 INFO @ Tue, 16 Jun 2020 12:57:51: 42000000 INFO @ Tue, 16 Jun 2020 12:57:57: 47000000 INFO @ Tue, 16 Jun 2020 12:57:59: 43000000 INFO @ Tue, 16 Jun 2020 12:58:02: 43000000 INFO @ Tue, 16 Jun 2020 12:58:08: 48000000 INFO @ Tue, 16 Jun 2020 12:58:08: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:58:13: 44000000 INFO @ Tue, 16 Jun 2020 12:58:17: 45000000 INFO @ Tue, 16 Jun 2020 12:58:18: 49000000 INFO @ Tue, 16 Jun 2020 12:58:24: 45000000 INFO @ Tue, 16 Jun 2020 12:58:26: 46000000 INFO @ Tue, 16 Jun 2020 12:58:28: 50000000 INFO @ Tue, 16 Jun 2020 12:58:34: 46000000 INFO @ Tue, 16 Jun 2020 12:58:36: 47000000 INFO @ Tue, 16 Jun 2020 12:58:39: 51000000 INFO @ Tue, 16 Jun 2020 12:58:45: 48000000 INFO @ Tue, 16 Jun 2020 12:58:45: 47000000 INFO @ Tue, 16 Jun 2020 12:58:50: 52000000 INFO @ Tue, 16 Jun 2020 12:58:54: 49000000 INFO @ Tue, 16 Jun 2020 12:58:56: 48000000 INFO @ Tue, 16 Jun 2020 12:59:01: 53000000 INFO @ Tue, 16 Jun 2020 12:59:03: 50000000 INFO @ Tue, 16 Jun 2020 12:59:08: 49000000 INFO @ Tue, 16 Jun 2020 12:59:12: 54000000 INFO @ Tue, 16 Jun 2020 12:59:12: 51000000 INFO @ Tue, 16 Jun 2020 12:59:19: 50000000 INFO @ Tue, 16 Jun 2020 12:59:22: 52000000 INFO @ Tue, 16 Jun 2020 12:59:22: 55000000 INFO @ Tue, 16 Jun 2020 12:59:30: 51000000 INFO @ Tue, 16 Jun 2020 12:59:31: 53000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:59:33: 56000000 INFO @ Tue, 16 Jun 2020 12:59:40: 54000000 INFO @ Tue, 16 Jun 2020 12:59:41: 52000000 INFO @ Tue, 16 Jun 2020 12:59:44: 57000000 INFO @ Tue, 16 Jun 2020 12:59:50: 55000000 INFO @ Tue, 16 Jun 2020 12:59:51: 53000000 INFO @ Tue, 16 Jun 2020 12:59:55: 58000000 INFO @ Tue, 16 Jun 2020 12:59:59: 56000000 INFO @ Tue, 16 Jun 2020 13:00:02: 54000000 INFO @ Tue, 16 Jun 2020 13:00:05: 59000000 INFO @ Tue, 16 Jun 2020 13:00:09: 57000000 INFO @ Tue, 16 Jun 2020 13:00:12: 55000000 INFO @ Tue, 16 Jun 2020 13:00:16: 60000000 INFO @ Tue, 16 Jun 2020 13:00:18: 58000000 INFO @ Tue, 16 Jun 2020 13:00:22: 56000000 INFO @ Tue, 16 Jun 2020 13:00:27: 61000000 INFO @ Tue, 16 Jun 2020 13:00:28: 59000000 INFO @ Tue, 16 Jun 2020 13:00:33: 57000000 INFO @ Tue, 16 Jun 2020 13:00:37: 60000000 INFO @ Tue, 16 Jun 2020 13:00:38: 62000000 INFO @ Tue, 16 Jun 2020 13:00:44: 58000000 INFO @ Tue, 16 Jun 2020 13:00:47: 61000000 INFO @ Tue, 16 Jun 2020 13:00:49: 63000000 INFO @ Tue, 16 Jun 2020 13:00:54: 59000000 INFO @ Tue, 16 Jun 2020 13:00:56: 62000000 INFO @ Tue, 16 Jun 2020 13:00:59: 64000000 INFO @ Tue, 16 Jun 2020 13:01:05: 60000000 INFO @ Tue, 16 Jun 2020 13:01:06: 63000000 INFO @ Tue, 16 Jun 2020 13:01:10: 65000000 INFO @ Tue, 16 Jun 2020 13:01:15: 64000000 INFO @ Tue, 16 Jun 2020 13:01:15: 61000000 INFO @ Tue, 16 Jun 2020 13:01:21: 66000000 INFO @ Tue, 16 Jun 2020 13:01:25: 65000000 INFO @ Tue, 16 Jun 2020 13:01:26: 62000000 INFO @ Tue, 16 Jun 2020 13:01:31: 67000000 INFO @ Tue, 16 Jun 2020 13:01:34: 66000000 INFO @ Tue, 16 Jun 2020 13:01:36: 63000000 INFO @ Tue, 16 Jun 2020 13:01:42: 68000000 INFO @ Tue, 16 Jun 2020 13:01:43: 67000000 INFO @ Tue, 16 Jun 2020 13:01:46: 64000000 INFO @ Tue, 16 Jun 2020 13:01:52: 68000000 INFO @ Tue, 16 Jun 2020 13:01:53: 69000000 INFO @ Tue, 16 Jun 2020 13:01:57: 65000000 INFO @ Tue, 16 Jun 2020 13:02:02: 69000000 INFO @ Tue, 16 Jun 2020 13:02:04: 70000000 INFO @ Tue, 16 Jun 2020 13:02:07: 66000000 INFO @ Tue, 16 Jun 2020 13:02:11: 70000000 INFO @ Tue, 16 Jun 2020 13:02:15: 71000000 INFO @ Tue, 16 Jun 2020 13:02:17: 67000000 INFO @ Tue, 16 Jun 2020 13:02:20: 71000000 INFO @ Tue, 16 Jun 2020 13:02:25: 72000000 INFO @ Tue, 16 Jun 2020 13:02:27: 68000000 INFO @ Tue, 16 Jun 2020 13:02:30: 72000000 INFO @ Tue, 16 Jun 2020 13:02:35: 73000000 INFO @ Tue, 16 Jun 2020 13:02:37: 69000000 INFO @ Tue, 16 Jun 2020 13:02:40: 73000000 INFO @ Tue, 16 Jun 2020 13:02:45: 74000000 INFO @ Tue, 16 Jun 2020 13:02:47: 70000000 INFO @ Tue, 16 Jun 2020 13:02:49: 74000000 INFO @ Tue, 16 Jun 2020 13:02:54: 75000000 INFO @ Tue, 16 Jun 2020 13:02:58: 71000000 INFO @ Tue, 16 Jun 2020 13:02:59: 75000000 INFO @ Tue, 16 Jun 2020 13:03:03: 76000000 INFO @ Tue, 16 Jun 2020 13:03:08: 76000000 INFO @ Tue, 16 Jun 2020 13:03:09: 72000000 INFO @ Tue, 16 Jun 2020 13:03:13: 77000000 INFO @ Tue, 16 Jun 2020 13:03:18: 77000000 INFO @ Tue, 16 Jun 2020 13:03:20: 73000000 INFO @ Tue, 16 Jun 2020 13:03:22: 78000000 INFO @ Tue, 16 Jun 2020 13:03:27: 78000000 INFO @ Tue, 16 Jun 2020 13:03:30: 74000000 INFO @ Tue, 16 Jun 2020 13:03:32: 79000000 INFO @ Tue, 16 Jun 2020 13:03:36: 79000000 INFO @ Tue, 16 Jun 2020 13:03:41: 75000000 INFO @ Tue, 16 Jun 2020 13:03:41: 80000000 INFO @ Tue, 16 Jun 2020 13:03:46: 80000000 INFO @ Tue, 16 Jun 2020 13:03:51: 81000000 INFO @ Tue, 16 Jun 2020 13:03:52: 76000000 INFO @ Tue, 16 Jun 2020 13:03:55: 81000000 INFO @ Tue, 16 Jun 2020 13:04:00: 82000000 INFO @ Tue, 16 Jun 2020 13:04:03: 77000000 INFO @ Tue, 16 Jun 2020 13:04:04: 82000000 INFO @ Tue, 16 Jun 2020 13:04:09: 83000000 INFO @ Tue, 16 Jun 2020 13:04:12: 78000000 INFO @ Tue, 16 Jun 2020 13:04:14: 83000000 INFO @ Tue, 16 Jun 2020 13:04:18: 84000000 INFO @ Tue, 16 Jun 2020 13:04:23: 84000000 INFO @ Tue, 16 Jun 2020 13:04:23: 79000000 INFO @ Tue, 16 Jun 2020 13:04:28: 85000000 INFO @ Tue, 16 Jun 2020 13:04:33: 85000000 INFO @ Tue, 16 Jun 2020 13:04:34: 80000000 INFO @ Tue, 16 Jun 2020 13:04:38: 86000000 INFO @ Tue, 16 Jun 2020 13:04:42: 86000000 INFO @ Tue, 16 Jun 2020 13:04:43: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:04:43: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:04:43: #1 total tags in treatment: 26438675 INFO @ Tue, 16 Jun 2020 13:04:43: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:04:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:04:44: #1 tags after filtering in treatment: 20316591 INFO @ Tue, 16 Jun 2020 13:04:44: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 13:04:44: #1 finished! INFO @ Tue, 16 Jun 2020 13:04:44: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:04:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:04:45: 81000000 INFO @ Tue, 16 Jun 2020 13:04:45: #2 number of paired peaks: 945 WARNING @ Tue, 16 Jun 2020 13:04:45: Fewer paired peaks (945) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 945 pairs to build model! INFO @ Tue, 16 Jun 2020 13:04:45: start model_add_line... INFO @ Tue, 16 Jun 2020 13:04:45: start X-correlation... INFO @ Tue, 16 Jun 2020 13:04:45: end of X-cor INFO @ Tue, 16 Jun 2020 13:04:45: #2 finished! INFO @ Tue, 16 Jun 2020 13:04:45: #2 predicted fragment length is 233 bps INFO @ Tue, 16 Jun 2020 13:04:45: #2 alternative fragment length(s) may be 3,233,250 bps INFO @ Tue, 16 Jun 2020 13:04:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.05_model.r WARNING @ Tue, 16 Jun 2020 13:04:45: #2 Since the d (233) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:04:45: #2 You may need to consider one of the other alternative d(s): 3,233,250 WARNING @ Tue, 16 Jun 2020 13:04:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:04:45: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:04:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:04:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:04:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:04:47: #1 total tags in treatment: 26438675 INFO @ Tue, 16 Jun 2020 13:04:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:04:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:04:48: #1 tags after filtering in treatment: 20316591 INFO @ Tue, 16 Jun 2020 13:04:48: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 13:04:48: #1 finished! INFO @ Tue, 16 Jun 2020 13:04:48: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:04:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:04:49: #2 number of paired peaks: 945 WARNING @ Tue, 16 Jun 2020 13:04:49: Fewer paired peaks (945) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 945 pairs to build model! INFO @ Tue, 16 Jun 2020 13:04:49: start model_add_line... INFO @ Tue, 16 Jun 2020 13:04:50: start X-correlation... INFO @ Tue, 16 Jun 2020 13:04:50: end of X-cor INFO @ Tue, 16 Jun 2020 13:04:50: #2 finished! INFO @ Tue, 16 Jun 2020 13:04:50: #2 predicted fragment length is 233 bps INFO @ Tue, 16 Jun 2020 13:04:50: #2 alternative fragment length(s) may be 3,233,250 bps INFO @ Tue, 16 Jun 2020 13:04:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.20_model.r WARNING @ Tue, 16 Jun 2020 13:04:50: #2 Since the d (233) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:04:50: #2 You may need to consider one of the other alternative d(s): 3,233,250 WARNING @ Tue, 16 Jun 2020 13:04:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:04:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:04:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:04:55: 82000000 INFO @ Tue, 16 Jun 2020 13:05:05: 83000000 INFO @ Tue, 16 Jun 2020 13:05:15: 84000000 INFO @ Tue, 16 Jun 2020 13:05:26: 85000000 INFO @ Tue, 16 Jun 2020 13:05:36: 86000000 INFO @ Tue, 16 Jun 2020 13:05:41: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:05:42: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 13:05:42: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 13:05:42: #1 total tags in treatment: 26438675 INFO @ Tue, 16 Jun 2020 13:05:42: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 13:05:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 13:05:42: #1 tags after filtering in treatment: 20316591 INFO @ Tue, 16 Jun 2020 13:05:42: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 13:05:42: #1 finished! INFO @ Tue, 16 Jun 2020 13:05:42: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 13:05:42: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 13:05:44: #2 number of paired peaks: 945 WARNING @ Tue, 16 Jun 2020 13:05:44: Fewer paired peaks (945) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 945 pairs to build model! INFO @ Tue, 16 Jun 2020 13:05:44: start model_add_line... INFO @ Tue, 16 Jun 2020 13:05:44: start X-correlation... INFO @ Tue, 16 Jun 2020 13:05:44: end of X-cor INFO @ Tue, 16 Jun 2020 13:05:44: #2 finished! INFO @ Tue, 16 Jun 2020 13:05:44: #2 predicted fragment length is 233 bps INFO @ Tue, 16 Jun 2020 13:05:44: #2 alternative fragment length(s) may be 3,233,250 bps INFO @ Tue, 16 Jun 2020 13:05:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.10_model.r WARNING @ Tue, 16 Jun 2020 13:05:44: #2 Since the d (233) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 13:05:44: #2 You may need to consider one of the other alternative d(s): 3,233,250 WARNING @ Tue, 16 Jun 2020 13:05:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 13:05:44: #3 Call peaks... INFO @ Tue, 16 Jun 2020 13:05:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 13:05:45: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:06:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.05_peaks.xls INFO @ Tue, 16 Jun 2020 13:06:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:06:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.05_summits.bed INFO @ Tue, 16 Jun 2020 13:06:03: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (11387 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 13:06:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.20_peaks.xls INFO @ Tue, 16 Jun 2020 13:06:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:06:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.20_summits.bed INFO @ Tue, 16 Jun 2020 13:06:07: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2292 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 13:06:40: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 13:07:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.10_peaks.xls INFO @ Tue, 16 Jun 2020 13:07:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 13:07:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619540/SRX6619540.10_summits.bed INFO @ Tue, 16 Jun 2020 13:07:02: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (6194 records, 4 fields): 7 millis CompletedMACS2peakCalling