Job ID = 6368838 SRX = SRX6619537 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:40:59 prefetch.2.10.7: 1) Downloading 'SRR9866075'... 2020-06-16T00:40:59 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:58:43 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:58:43 prefetch.2.10.7: 1) 'SRR9866075' was downloaded successfully 2020-06-16T00:58:43 prefetch.2.10.7: 'SRR9866075' has 0 unresolved dependencies Read 39751115 spots for SRR9866075/SRR9866075.sra Written 39751115 spots for SRR9866075/SRR9866075.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:15:18 39751115 reads; of these: 39751115 (100.00%) were paired; of these: 24879506 (62.59%) aligned concordantly 0 times 12264404 (30.85%) aligned concordantly exactly 1 time 2607205 (6.56%) aligned concordantly >1 times ---- 24879506 pairs aligned concordantly 0 times; of these: 12311783 (49.49%) aligned discordantly 1 time ---- 12567723 pairs aligned 0 times concordantly or discordantly; of these: 25135446 mates make up the pairs; of these: 21855422 (86.95%) aligned 0 times 1138412 (4.53%) aligned exactly 1 time 2141612 (8.52%) aligned >1 times 72.51% overall alignment rate Time searching: 01:15:18 Overall time: 01:15:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4154271 / 26638996 = 0.1559 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:00:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:00:44: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:00:44: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:00:53: 1000000 INFO @ Tue, 16 Jun 2020 12:01:03: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:01:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:01:12: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:01:12: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:01:12: 3000000 INFO @ Tue, 16 Jun 2020 12:01:22: 1000000 INFO @ Tue, 16 Jun 2020 12:01:23: 4000000 INFO @ Tue, 16 Jun 2020 12:01:32: 2000000 INFO @ Tue, 16 Jun 2020 12:01:33: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:01:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:01:42: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:01:42: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:01:43: 3000000 INFO @ Tue, 16 Jun 2020 12:01:44: 6000000 INFO @ Tue, 16 Jun 2020 12:01:52: 1000000 INFO @ Tue, 16 Jun 2020 12:01:53: 4000000 INFO @ Tue, 16 Jun 2020 12:01:54: 7000000 INFO @ Tue, 16 Jun 2020 12:02:03: 2000000 INFO @ Tue, 16 Jun 2020 12:02:04: 5000000 INFO @ Tue, 16 Jun 2020 12:02:05: 8000000 INFO @ Tue, 16 Jun 2020 12:02:13: 3000000 INFO @ Tue, 16 Jun 2020 12:02:14: 6000000 INFO @ Tue, 16 Jun 2020 12:02:15: 9000000 INFO @ Tue, 16 Jun 2020 12:02:24: 4000000 INFO @ Tue, 16 Jun 2020 12:02:25: 7000000 INFO @ Tue, 16 Jun 2020 12:02:26: 10000000 INFO @ Tue, 16 Jun 2020 12:02:35: 5000000 INFO @ Tue, 16 Jun 2020 12:02:35: 8000000 INFO @ Tue, 16 Jun 2020 12:02:36: 11000000 INFO @ Tue, 16 Jun 2020 12:02:45: 6000000 INFO @ Tue, 16 Jun 2020 12:02:46: 9000000 INFO @ Tue, 16 Jun 2020 12:02:47: 12000000 INFO @ Tue, 16 Jun 2020 12:02:56: 7000000 INFO @ Tue, 16 Jun 2020 12:02:57: 10000000 INFO @ Tue, 16 Jun 2020 12:02:57: 13000000 INFO @ Tue, 16 Jun 2020 12:03:06: 8000000 INFO @ Tue, 16 Jun 2020 12:03:08: 11000000 INFO @ Tue, 16 Jun 2020 12:03:08: 14000000 INFO @ Tue, 16 Jun 2020 12:03:17: 9000000 INFO @ Tue, 16 Jun 2020 12:03:18: 12000000 INFO @ Tue, 16 Jun 2020 12:03:18: 15000000 INFO @ Tue, 16 Jun 2020 12:03:28: 10000000 INFO @ Tue, 16 Jun 2020 12:03:29: 16000000 INFO @ Tue, 16 Jun 2020 12:03:29: 13000000 INFO @ Tue, 16 Jun 2020 12:03:39: 11000000 INFO @ Tue, 16 Jun 2020 12:03:40: 17000000 INFO @ Tue, 16 Jun 2020 12:03:40: 14000000 INFO @ Tue, 16 Jun 2020 12:03:49: 12000000 INFO @ Tue, 16 Jun 2020 12:03:50: 18000000 INFO @ Tue, 16 Jun 2020 12:03:50: 15000000 INFO @ Tue, 16 Jun 2020 12:04:00: 13000000 INFO @ Tue, 16 Jun 2020 12:04:01: 19000000 INFO @ Tue, 16 Jun 2020 12:04:01: 16000000 INFO @ Tue, 16 Jun 2020 12:04:10: 14000000 INFO @ Tue, 16 Jun 2020 12:04:11: 20000000 INFO @ Tue, 16 Jun 2020 12:04:12: 17000000 INFO @ Tue, 16 Jun 2020 12:04:21: 15000000 INFO @ Tue, 16 Jun 2020 12:04:21: 21000000 INFO @ Tue, 16 Jun 2020 12:04:22: 18000000 INFO @ Tue, 16 Jun 2020 12:04:31: 16000000 INFO @ Tue, 16 Jun 2020 12:04:32: 22000000 INFO @ Tue, 16 Jun 2020 12:04:32: 19000000 INFO @ Tue, 16 Jun 2020 12:04:42: 17000000 INFO @ Tue, 16 Jun 2020 12:04:42: 23000000 INFO @ Tue, 16 Jun 2020 12:04:43: 20000000 INFO @ Tue, 16 Jun 2020 12:04:52: 18000000 INFO @ Tue, 16 Jun 2020 12:04:52: 24000000 INFO @ Tue, 16 Jun 2020 12:04:53: 21000000 INFO @ Tue, 16 Jun 2020 12:05:02: 19000000 INFO @ Tue, 16 Jun 2020 12:05:03: 25000000 INFO @ Tue, 16 Jun 2020 12:05:04: 22000000 INFO @ Tue, 16 Jun 2020 12:05:12: 20000000 INFO @ Tue, 16 Jun 2020 12:05:13: 26000000 INFO @ Tue, 16 Jun 2020 12:05:14: 23000000 INFO @ Tue, 16 Jun 2020 12:05:23: 21000000 INFO @ Tue, 16 Jun 2020 12:05:23: 27000000 INFO @ Tue, 16 Jun 2020 12:05:24: 24000000 INFO @ Tue, 16 Jun 2020 12:05:33: 22000000 INFO @ Tue, 16 Jun 2020 12:05:33: 28000000 INFO @ Tue, 16 Jun 2020 12:05:34: 25000000 INFO @ Tue, 16 Jun 2020 12:05:43: 23000000 INFO @ Tue, 16 Jun 2020 12:05:43: 29000000 INFO @ Tue, 16 Jun 2020 12:05:44: 26000000 INFO @ Tue, 16 Jun 2020 12:05:53: 30000000 INFO @ Tue, 16 Jun 2020 12:05:53: 24000000 INFO @ Tue, 16 Jun 2020 12:05:55: 27000000 INFO @ Tue, 16 Jun 2020 12:06:03: 31000000 INFO @ Tue, 16 Jun 2020 12:06:03: 25000000 INFO @ Tue, 16 Jun 2020 12:06:05: 28000000 INFO @ Tue, 16 Jun 2020 12:06:13: 32000000 INFO @ Tue, 16 Jun 2020 12:06:14: 26000000 INFO @ Tue, 16 Jun 2020 12:06:15: 29000000 INFO @ Tue, 16 Jun 2020 12:06:23: 33000000 INFO @ Tue, 16 Jun 2020 12:06:24: 27000000 INFO @ Tue, 16 Jun 2020 12:06:25: 30000000 INFO @ Tue, 16 Jun 2020 12:06:34: 34000000 INFO @ Tue, 16 Jun 2020 12:06:34: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:06:36: 31000000 INFO @ Tue, 16 Jun 2020 12:06:45: 35000000 INFO @ Tue, 16 Jun 2020 12:06:45: 29000000 INFO @ Tue, 16 Jun 2020 12:06:46: 32000000 INFO @ Tue, 16 Jun 2020 12:06:55: 36000000 INFO @ Tue, 16 Jun 2020 12:06:56: 30000000 INFO @ Tue, 16 Jun 2020 12:06:57: 33000000 INFO @ Tue, 16 Jun 2020 12:07:06: 37000000 INFO @ Tue, 16 Jun 2020 12:07:07: 31000000 INFO @ Tue, 16 Jun 2020 12:07:08: 34000000 INFO @ Tue, 16 Jun 2020 12:07:17: 38000000 INFO @ Tue, 16 Jun 2020 12:07:18: 32000000 INFO @ Tue, 16 Jun 2020 12:07:18: 35000000 INFO @ Tue, 16 Jun 2020 12:07:27: 39000000 INFO @ Tue, 16 Jun 2020 12:07:28: 33000000 INFO @ Tue, 16 Jun 2020 12:07:29: 36000000 INFO @ Tue, 16 Jun 2020 12:07:37: 40000000 INFO @ Tue, 16 Jun 2020 12:07:38: 34000000 INFO @ Tue, 16 Jun 2020 12:07:40: 37000000 INFO @ Tue, 16 Jun 2020 12:07:48: 41000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:07:49: 35000000 INFO @ Tue, 16 Jun 2020 12:07:50: 38000000 INFO @ Tue, 16 Jun 2020 12:07:58: 42000000 INFO @ Tue, 16 Jun 2020 12:07:59: 36000000 INFO @ Tue, 16 Jun 2020 12:08:00: 39000000 INFO @ Tue, 16 Jun 2020 12:08:09: 43000000 INFO @ Tue, 16 Jun 2020 12:08:09: 37000000 INFO @ Tue, 16 Jun 2020 12:08:10: 40000000 INFO @ Tue, 16 Jun 2020 12:08:19: 44000000 INFO @ Tue, 16 Jun 2020 12:08:20: 38000000 INFO @ Tue, 16 Jun 2020 12:08:20: 41000000 INFO @ Tue, 16 Jun 2020 12:08:29: 45000000 INFO @ Tue, 16 Jun 2020 12:08:30: 39000000 INFO @ Tue, 16 Jun 2020 12:08:30: 42000000 INFO @ Tue, 16 Jun 2020 12:08:39: 46000000 INFO @ Tue, 16 Jun 2020 12:08:40: 40000000 INFO @ Tue, 16 Jun 2020 12:08:41: 43000000 INFO @ Tue, 16 Jun 2020 12:08:49: 47000000 INFO @ Tue, 16 Jun 2020 12:08:50: 41000000 INFO @ Tue, 16 Jun 2020 12:08:50: 44000000 INFO @ Tue, 16 Jun 2020 12:08:59: 48000000 INFO @ Tue, 16 Jun 2020 12:09:00: 42000000 INFO @ Tue, 16 Jun 2020 12:09:00: 45000000 INFO @ Tue, 16 Jun 2020 12:09:09: 49000000 INFO @ Tue, 16 Jun 2020 12:09:10: 46000000 INFO @ Tue, 16 Jun 2020 12:09:10: 43000000 INFO @ Tue, 16 Jun 2020 12:09:13: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:09:13: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:09:13: #1 total tags in treatment: 12357957 INFO @ Tue, 16 Jun 2020 12:09:13: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:09:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:09:13: #1 tags after filtering in treatment: 10443190 INFO @ Tue, 16 Jun 2020 12:09:13: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 12:09:13: #1 finished! INFO @ Tue, 16 Jun 2020 12:09:13: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:09:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:09:14: #2 number of paired peaks: 311 WARNING @ Tue, 16 Jun 2020 12:09:14: Fewer paired peaks (311) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 311 pairs to build model! INFO @ Tue, 16 Jun 2020 12:09:14: start model_add_line... INFO @ Tue, 16 Jun 2020 12:09:14: start X-correlation... INFO @ Tue, 16 Jun 2020 12:09:14: end of X-cor INFO @ Tue, 16 Jun 2020 12:09:14: #2 finished! INFO @ Tue, 16 Jun 2020 12:09:14: #2 predicted fragment length is 218 bps INFO @ Tue, 16 Jun 2020 12:09:14: #2 alternative fragment length(s) may be 218 bps INFO @ Tue, 16 Jun 2020 12:09:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.05_model.r WARNING @ Tue, 16 Jun 2020 12:09:14: #2 Since the d (218) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:09:14: #2 You may need to consider one of the other alternative d(s): 218 WARNING @ Tue, 16 Jun 2020 12:09:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:09:14: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:09:14: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:09:20: 47000000 INFO @ Tue, 16 Jun 2020 12:09:20: 44000000 INFO @ Tue, 16 Jun 2020 12:09:30: 45000000 INFO @ Tue, 16 Jun 2020 12:09:30: 48000000 INFO @ Tue, 16 Jun 2020 12:09:36: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:09:40: 46000000 INFO @ Tue, 16 Jun 2020 12:09:40: 49000000 INFO @ Tue, 16 Jun 2020 12:09:44: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:09:44: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:09:44: #1 total tags in treatment: 12357957 INFO @ Tue, 16 Jun 2020 12:09:44: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:09:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:09:44: #1 tags after filtering in treatment: 10443190 INFO @ Tue, 16 Jun 2020 12:09:44: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 12:09:44: #1 finished! INFO @ Tue, 16 Jun 2020 12:09:44: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:09:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:09:45: #2 number of paired peaks: 311 WARNING @ Tue, 16 Jun 2020 12:09:45: Fewer paired peaks (311) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 311 pairs to build model! INFO @ Tue, 16 Jun 2020 12:09:45: start model_add_line... INFO @ Tue, 16 Jun 2020 12:09:45: start X-correlation... INFO @ Tue, 16 Jun 2020 12:09:45: end of X-cor INFO @ Tue, 16 Jun 2020 12:09:45: #2 finished! INFO @ Tue, 16 Jun 2020 12:09:45: #2 predicted fragment length is 218 bps INFO @ Tue, 16 Jun 2020 12:09:45: #2 alternative fragment length(s) may be 218 bps INFO @ Tue, 16 Jun 2020 12:09:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.10_model.r WARNING @ Tue, 16 Jun 2020 12:09:45: #2 Since the d (218) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:09:45: #2 You may need to consider one of the other alternative d(s): 218 WARNING @ Tue, 16 Jun 2020 12:09:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:09:45: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:09:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:09:47: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:09:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:09:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.05_summits.bed INFO @ Tue, 16 Jun 2020 12:09:47: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (514 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:09:49: 47000000 INFO @ Tue, 16 Jun 2020 12:09:59: 48000000 INFO @ Tue, 16 Jun 2020 12:10:07: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:10:08: 49000000 INFO @ Tue, 16 Jun 2020 12:10:11: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:10:11: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:10:11: #1 total tags in treatment: 12357957 INFO @ Tue, 16 Jun 2020 12:10:11: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:10:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:10:11: #1 tags after filtering in treatment: 10443190 INFO @ Tue, 16 Jun 2020 12:10:11: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 12:10:11: #1 finished! INFO @ Tue, 16 Jun 2020 12:10:11: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:10:11: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:10:12: #2 number of paired peaks: 311 WARNING @ Tue, 16 Jun 2020 12:10:12: Fewer paired peaks (311) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 311 pairs to build model! INFO @ Tue, 16 Jun 2020 12:10:12: start model_add_line... INFO @ Tue, 16 Jun 2020 12:10:12: start X-correlation... INFO @ Tue, 16 Jun 2020 12:10:12: end of X-cor INFO @ Tue, 16 Jun 2020 12:10:12: #2 finished! INFO @ Tue, 16 Jun 2020 12:10:12: #2 predicted fragment length is 218 bps INFO @ Tue, 16 Jun 2020 12:10:12: #2 alternative fragment length(s) may be 218 bps INFO @ Tue, 16 Jun 2020 12:10:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.20_model.r WARNING @ Tue, 16 Jun 2020 12:10:12: #2 Since the d (218) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:10:12: #2 You may need to consider one of the other alternative d(s): 218 WARNING @ Tue, 16 Jun 2020 12:10:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:10:12: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:10:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:10:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:10:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:10:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.10_summits.bed INFO @ Tue, 16 Jun 2020 12:10:17: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (342 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:10:35: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:10:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:10:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:10:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619537/SRX6619537.20_summits.bed INFO @ Tue, 16 Jun 2020 12:10:46: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (214 records, 4 fields): 1 millis CompletedMACS2peakCalling