Job ID = 6368835 SRX = SRX6619534 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:39:16 prefetch.2.10.7: 1) Downloading 'SRR9866074'... 2020-06-16T00:39:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:55:48 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:55:48 prefetch.2.10.7: 1) 'SRR9866074' was downloaded successfully 2020-06-16T00:55:48 prefetch.2.10.7: 'SRR9866074' has 0 unresolved dependencies Read 36791139 spots for SRR9866074/SRR9866074.sra Written 36791139 spots for SRR9866074/SRR9866074.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:28:43 36791139 reads; of these: 36791139 (100.00%) were paired; of these: 17951320 (48.79%) aligned concordantly 0 times 13662268 (37.13%) aligned concordantly exactly 1 time 5177551 (14.07%) aligned concordantly >1 times ---- 17951320 pairs aligned concordantly 0 times; of these: 7442568 (41.46%) aligned discordantly 1 time ---- 10508752 pairs aligned 0 times concordantly or discordantly; of these: 21017504 mates make up the pairs; of these: 17140027 (81.55%) aligned 0 times 1307623 (6.22%) aligned exactly 1 time 2569854 (12.23%) aligned >1 times 76.71% overall alignment rate Time searching: 01:28:45 Overall time: 01:28:45 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4475354 / 25916655 = 0.1727 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:56:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:56:22: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:56:22: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:56:31: 1000000 INFO @ Tue, 16 Jun 2020 11:56:40: 2000000 INFO @ Tue, 16 Jun 2020 11:56:48: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:56:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:56:52: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:56:52: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:56:57: 4000000 INFO @ Tue, 16 Jun 2020 11:57:02: 1000000 INFO @ Tue, 16 Jun 2020 11:57:07: 5000000 INFO @ Tue, 16 Jun 2020 11:57:11: 2000000 INFO @ Tue, 16 Jun 2020 11:57:16: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:57:20: 3000000 INFO @ Tue, 16 Jun 2020 11:57:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:57:22: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:57:22: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:57:26: 7000000 INFO @ Tue, 16 Jun 2020 11:57:30: 4000000 INFO @ Tue, 16 Jun 2020 11:57:32: 1000000 INFO @ Tue, 16 Jun 2020 11:57:35: 8000000 INFO @ Tue, 16 Jun 2020 11:57:40: 5000000 INFO @ Tue, 16 Jun 2020 11:57:42: 2000000 INFO @ Tue, 16 Jun 2020 11:57:45: 9000000 INFO @ Tue, 16 Jun 2020 11:57:49: 6000000 INFO @ Tue, 16 Jun 2020 11:57:51: 3000000 INFO @ Tue, 16 Jun 2020 11:57:54: 10000000 INFO @ Tue, 16 Jun 2020 11:57:59: 7000000 INFO @ Tue, 16 Jun 2020 11:58:01: 4000000 INFO @ Tue, 16 Jun 2020 11:58:04: 11000000 INFO @ Tue, 16 Jun 2020 11:58:08: 8000000 INFO @ Tue, 16 Jun 2020 11:58:10: 5000000 INFO @ Tue, 16 Jun 2020 11:58:13: 12000000 INFO @ Tue, 16 Jun 2020 11:58:17: 9000000 INFO @ Tue, 16 Jun 2020 11:58:20: 6000000 INFO @ Tue, 16 Jun 2020 11:58:23: 13000000 INFO @ Tue, 16 Jun 2020 11:58:27: 10000000 INFO @ Tue, 16 Jun 2020 11:58:29: 7000000 INFO @ Tue, 16 Jun 2020 11:58:32: 14000000 INFO @ Tue, 16 Jun 2020 11:58:36: 11000000 INFO @ Tue, 16 Jun 2020 11:58:39: 8000000 INFO @ Tue, 16 Jun 2020 11:58:42: 15000000 INFO @ Tue, 16 Jun 2020 11:58:46: 12000000 INFO @ Tue, 16 Jun 2020 11:58:48: 9000000 INFO @ Tue, 16 Jun 2020 11:58:51: 16000000 INFO @ Tue, 16 Jun 2020 11:58:55: 13000000 INFO @ Tue, 16 Jun 2020 11:58:57: 10000000 INFO @ Tue, 16 Jun 2020 11:59:01: 17000000 INFO @ Tue, 16 Jun 2020 11:59:05: 14000000 INFO @ Tue, 16 Jun 2020 11:59:07: 11000000 INFO @ Tue, 16 Jun 2020 11:59:10: 18000000 INFO @ Tue, 16 Jun 2020 11:59:14: 15000000 INFO @ Tue, 16 Jun 2020 11:59:16: 12000000 INFO @ Tue, 16 Jun 2020 11:59:20: 19000000 INFO @ Tue, 16 Jun 2020 11:59:24: 16000000 INFO @ Tue, 16 Jun 2020 11:59:25: 13000000 INFO @ Tue, 16 Jun 2020 11:59:29: 20000000 INFO @ Tue, 16 Jun 2020 11:59:33: 17000000 INFO @ Tue, 16 Jun 2020 11:59:35: 14000000 INFO @ Tue, 16 Jun 2020 11:59:39: 21000000 INFO @ Tue, 16 Jun 2020 11:59:42: 18000000 INFO @ Tue, 16 Jun 2020 11:59:44: 15000000 INFO @ Tue, 16 Jun 2020 11:59:48: 22000000 INFO @ Tue, 16 Jun 2020 11:59:52: 19000000 INFO @ Tue, 16 Jun 2020 11:59:54: 16000000 INFO @ Tue, 16 Jun 2020 11:59:57: 23000000 INFO @ Tue, 16 Jun 2020 12:00:01: 20000000 INFO @ Tue, 16 Jun 2020 12:00:03: 17000000 INFO @ Tue, 16 Jun 2020 12:00:07: 24000000 INFO @ Tue, 16 Jun 2020 12:00:11: 21000000 INFO @ Tue, 16 Jun 2020 12:00:13: 18000000 INFO @ Tue, 16 Jun 2020 12:00:16: 25000000 INFO @ Tue, 16 Jun 2020 12:00:20: 22000000 INFO @ Tue, 16 Jun 2020 12:00:22: 19000000 INFO @ Tue, 16 Jun 2020 12:00:26: 26000000 INFO @ Tue, 16 Jun 2020 12:00:30: 23000000 INFO @ Tue, 16 Jun 2020 12:00:32: 20000000 INFO @ Tue, 16 Jun 2020 12:00:35: 27000000 INFO @ Tue, 16 Jun 2020 12:00:39: 24000000 INFO @ Tue, 16 Jun 2020 12:00:41: 21000000 INFO @ Tue, 16 Jun 2020 12:00:45: 28000000 INFO @ Tue, 16 Jun 2020 12:00:49: 25000000 INFO @ Tue, 16 Jun 2020 12:00:51: 22000000 INFO @ Tue, 16 Jun 2020 12:00:54: 29000000 INFO @ Tue, 16 Jun 2020 12:00:59: 26000000 INFO @ Tue, 16 Jun 2020 12:01:01: 23000000 INFO @ Tue, 16 Jun 2020 12:01:04: 30000000 INFO @ Tue, 16 Jun 2020 12:01:08: 27000000 INFO @ Tue, 16 Jun 2020 12:01:10: 24000000 INFO @ Tue, 16 Jun 2020 12:01:13: 31000000 INFO @ Tue, 16 Jun 2020 12:01:18: 28000000 INFO @ Tue, 16 Jun 2020 12:01:20: 25000000 INFO @ Tue, 16 Jun 2020 12:01:23: 32000000 INFO @ Tue, 16 Jun 2020 12:01:28: 29000000 INFO @ Tue, 16 Jun 2020 12:01:29: 26000000 INFO @ Tue, 16 Jun 2020 12:01:32: 33000000 INFO @ Tue, 16 Jun 2020 12:01:37: 30000000 INFO @ Tue, 16 Jun 2020 12:01:39: 27000000 INFO @ Tue, 16 Jun 2020 12:01:42: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:01:47: 31000000 INFO @ Tue, 16 Jun 2020 12:01:49: 28000000 INFO @ Tue, 16 Jun 2020 12:01:52: 35000000 INFO @ Tue, 16 Jun 2020 12:01:56: 32000000 INFO @ Tue, 16 Jun 2020 12:01:58: 29000000 INFO @ Tue, 16 Jun 2020 12:02:01: 36000000 INFO @ Tue, 16 Jun 2020 12:02:06: 33000000 INFO @ Tue, 16 Jun 2020 12:02:08: 30000000 INFO @ Tue, 16 Jun 2020 12:02:11: 37000000 INFO @ Tue, 16 Jun 2020 12:02:15: 34000000 INFO @ Tue, 16 Jun 2020 12:02:17: 31000000 INFO @ Tue, 16 Jun 2020 12:02:20: 38000000 INFO @ Tue, 16 Jun 2020 12:02:25: 35000000 INFO @ Tue, 16 Jun 2020 12:02:27: 32000000 INFO @ Tue, 16 Jun 2020 12:02:29: 39000000 INFO @ Tue, 16 Jun 2020 12:02:34: 36000000 INFO @ Tue, 16 Jun 2020 12:02:36: 33000000 INFO @ Tue, 16 Jun 2020 12:02:38: 40000000 INFO @ Tue, 16 Jun 2020 12:02:44: 37000000 INFO @ Tue, 16 Jun 2020 12:02:46: 34000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:02:48: 41000000 INFO @ Tue, 16 Jun 2020 12:02:53: 38000000 INFO @ Tue, 16 Jun 2020 12:02:55: 35000000 INFO @ Tue, 16 Jun 2020 12:02:57: 42000000 INFO @ Tue, 16 Jun 2020 12:03:03: 39000000 INFO @ Tue, 16 Jun 2020 12:03:05: 36000000 INFO @ Tue, 16 Jun 2020 12:03:07: 43000000 INFO @ Tue, 16 Jun 2020 12:03:12: 40000000 INFO @ Tue, 16 Jun 2020 12:03:14: 37000000 INFO @ Tue, 16 Jun 2020 12:03:16: 44000000 INFO @ Tue, 16 Jun 2020 12:03:21: 41000000 INFO @ Tue, 16 Jun 2020 12:03:24: 38000000 INFO @ Tue, 16 Jun 2020 12:03:26: 45000000 INFO @ Tue, 16 Jun 2020 12:03:31: 42000000 INFO @ Tue, 16 Jun 2020 12:03:33: 39000000 INFO @ Tue, 16 Jun 2020 12:03:35: 46000000 INFO @ Tue, 16 Jun 2020 12:03:41: 43000000 INFO @ Tue, 16 Jun 2020 12:03:43: 40000000 INFO @ Tue, 16 Jun 2020 12:03:45: 47000000 INFO @ Tue, 16 Jun 2020 12:03:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:03:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:03:49: #1 total tags in treatment: 15247846 INFO @ Tue, 16 Jun 2020 12:03:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:03:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:03:50: #1 tags after filtering in treatment: 11397863 INFO @ Tue, 16 Jun 2020 12:03:50: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 16 Jun 2020 12:03:50: #1 finished! INFO @ Tue, 16 Jun 2020 12:03:50: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:03:50: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:03:50: 44000000 INFO @ Tue, 16 Jun 2020 12:03:51: #2 number of paired peaks: 466 WARNING @ Tue, 16 Jun 2020 12:03:51: Fewer paired peaks (466) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 466 pairs to build model! INFO @ Tue, 16 Jun 2020 12:03:51: start model_add_line... INFO @ Tue, 16 Jun 2020 12:03:51: start X-correlation... INFO @ Tue, 16 Jun 2020 12:03:51: end of X-cor INFO @ Tue, 16 Jun 2020 12:03:51: #2 finished! INFO @ Tue, 16 Jun 2020 12:03:51: #2 predicted fragment length is 221 bps INFO @ Tue, 16 Jun 2020 12:03:51: #2 alternative fragment length(s) may be 221 bps INFO @ Tue, 16 Jun 2020 12:03:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.05_model.r WARNING @ Tue, 16 Jun 2020 12:03:51: #2 Since the d (221) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:03:51: #2 You may need to consider one of the other alternative d(s): 221 WARNING @ Tue, 16 Jun 2020 12:03:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:03:51: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:03:51: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:03:52: 41000000 INFO @ Tue, 16 Jun 2020 12:03:59: 45000000 INFO @ Tue, 16 Jun 2020 12:04:02: 42000000 INFO @ Tue, 16 Jun 2020 12:04:09: 46000000 INFO @ Tue, 16 Jun 2020 12:04:11: 43000000 INFO @ Tue, 16 Jun 2020 12:04:18: 47000000 INFO @ Tue, 16 Jun 2020 12:04:19: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:04:20: 44000000 INFO @ Tue, 16 Jun 2020 12:04:22: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:04:22: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:04:22: #1 total tags in treatment: 15247846 INFO @ Tue, 16 Jun 2020 12:04:22: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:04:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:04:23: #1 tags after filtering in treatment: 11397863 INFO @ Tue, 16 Jun 2020 12:04:23: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 16 Jun 2020 12:04:23: #1 finished! INFO @ Tue, 16 Jun 2020 12:04:23: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:04:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:04:24: #2 number of paired peaks: 466 WARNING @ Tue, 16 Jun 2020 12:04:24: Fewer paired peaks (466) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 466 pairs to build model! INFO @ Tue, 16 Jun 2020 12:04:24: start model_add_line... INFO @ Tue, 16 Jun 2020 12:04:24: start X-correlation... INFO @ Tue, 16 Jun 2020 12:04:24: end of X-cor INFO @ Tue, 16 Jun 2020 12:04:24: #2 finished! INFO @ Tue, 16 Jun 2020 12:04:24: #2 predicted fragment length is 221 bps INFO @ Tue, 16 Jun 2020 12:04:24: #2 alternative fragment length(s) may be 221 bps INFO @ Tue, 16 Jun 2020 12:04:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.10_model.r WARNING @ Tue, 16 Jun 2020 12:04:24: #2 Since the d (221) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:04:24: #2 You may need to consider one of the other alternative d(s): 221 WARNING @ Tue, 16 Jun 2020 12:04:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:04:24: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:04:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:04:29: 45000000 INFO @ Tue, 16 Jun 2020 12:04:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:04:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:04:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.05_summits.bed INFO @ Tue, 16 Jun 2020 12:04:32: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (1282 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:04:37: 46000000 INFO @ Tue, 16 Jun 2020 12:04:45: 47000000 INFO @ Tue, 16 Jun 2020 12:04:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:04:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:04:49: #1 total tags in treatment: 15247846 INFO @ Tue, 16 Jun 2020 12:04:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:04:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:04:50: #1 tags after filtering in treatment: 11397863 INFO @ Tue, 16 Jun 2020 12:04:50: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 16 Jun 2020 12:04:50: #1 finished! INFO @ Tue, 16 Jun 2020 12:04:50: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:04:50: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:04:50: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:04:50: #2 number of paired peaks: 466 WARNING @ Tue, 16 Jun 2020 12:04:50: Fewer paired peaks (466) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 466 pairs to build model! INFO @ Tue, 16 Jun 2020 12:04:50: start model_add_line... INFO @ Tue, 16 Jun 2020 12:04:50: start X-correlation... INFO @ Tue, 16 Jun 2020 12:04:50: end of X-cor INFO @ Tue, 16 Jun 2020 12:04:50: #2 finished! INFO @ Tue, 16 Jun 2020 12:04:50: #2 predicted fragment length is 221 bps INFO @ Tue, 16 Jun 2020 12:04:50: #2 alternative fragment length(s) may be 221 bps INFO @ Tue, 16 Jun 2020 12:04:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.20_model.r WARNING @ Tue, 16 Jun 2020 12:04:50: #2 Since the d (221) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:04:50: #2 You may need to consider one of the other alternative d(s): 221 WARNING @ Tue, 16 Jun 2020 12:04:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:04:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:04:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:05:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.10_summits.bed INFO @ Tue, 16 Jun 2020 12:05:03: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (634 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:05:17: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:05:29: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:05:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:05:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619534/SRX6619534.20_summits.bed INFO @ Tue, 16 Jun 2020 12:05:29: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (317 records, 4 fields): 2 millis CompletedMACS2peakCalling