Job ID = 6368834 SRX = SRX6619533 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:01 prefetch.2.10.7: 1) Downloading 'SRR9866076'... 2020-06-16T00:30:01 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:45:56 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:45:56 prefetch.2.10.7: 1) 'SRR9866076' was downloaded successfully 2020-06-16T00:45:56 prefetch.2.10.7: 'SRR9866076' has 0 unresolved dependencies Read 36568503 spots for SRR9866076/SRR9866076.sra Written 36568503 spots for SRR9866076/SRR9866076.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:06:08 36568503 reads; of these: 36568503 (100.00%) were paired; of these: 18594660 (50.85%) aligned concordantly 0 times 15153074 (41.44%) aligned concordantly exactly 1 time 2820769 (7.71%) aligned concordantly >1 times ---- 18594660 pairs aligned concordantly 0 times; of these: 9968974 (53.61%) aligned discordantly 1 time ---- 8625686 pairs aligned 0 times concordantly or discordantly; of these: 17251372 mates make up the pairs; of these: 13599839 (78.83%) aligned 0 times 1763563 (10.22%) aligned exactly 1 time 1887970 (10.94%) aligned >1 times 81.40% overall alignment rate Time searching: 01:06:08 Overall time: 01:06:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4906385 / 27188226 = 0.1805 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:23:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:23:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:23:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:23:28: 1000000 INFO @ Tue, 16 Jun 2020 11:23:38: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:23:48: 3000000 INFO @ Tue, 16 Jun 2020 11:23:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:23:48: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:23:48: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:23:59: 1000000 INFO @ Tue, 16 Jun 2020 11:24:01: 4000000 INFO @ Tue, 16 Jun 2020 11:24:11: 2000000 INFO @ Tue, 16 Jun 2020 11:24:14: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:24:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:24:18: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:24:18: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:24:23: 3000000 INFO @ Tue, 16 Jun 2020 11:24:28: 6000000 INFO @ Tue, 16 Jun 2020 11:24:30: 1000000 INFO @ Tue, 16 Jun 2020 11:24:35: 4000000 INFO @ Tue, 16 Jun 2020 11:24:41: 7000000 INFO @ Tue, 16 Jun 2020 11:24:42: 2000000 INFO @ Tue, 16 Jun 2020 11:24:47: 5000000 INFO @ Tue, 16 Jun 2020 11:24:53: 8000000 INFO @ Tue, 16 Jun 2020 11:24:54: 3000000 INFO @ Tue, 16 Jun 2020 11:24:59: 6000000 INFO @ Tue, 16 Jun 2020 11:25:05: 9000000 INFO @ Tue, 16 Jun 2020 11:25:06: 4000000 INFO @ Tue, 16 Jun 2020 11:25:11: 7000000 INFO @ Tue, 16 Jun 2020 11:25:17: 10000000 INFO @ Tue, 16 Jun 2020 11:25:18: 5000000 INFO @ Tue, 16 Jun 2020 11:25:24: 8000000 INFO @ Tue, 16 Jun 2020 11:25:29: 11000000 INFO @ Tue, 16 Jun 2020 11:25:30: 6000000 INFO @ Tue, 16 Jun 2020 11:25:37: 9000000 INFO @ Tue, 16 Jun 2020 11:25:41: 12000000 INFO @ Tue, 16 Jun 2020 11:25:41: 7000000 INFO @ Tue, 16 Jun 2020 11:25:50: 10000000 INFO @ Tue, 16 Jun 2020 11:25:53: 13000000 INFO @ Tue, 16 Jun 2020 11:25:55: 8000000 INFO @ Tue, 16 Jun 2020 11:26:03: 11000000 INFO @ Tue, 16 Jun 2020 11:26:05: 14000000 INFO @ Tue, 16 Jun 2020 11:26:08: 9000000 INFO @ Tue, 16 Jun 2020 11:26:16: 12000000 INFO @ Tue, 16 Jun 2020 11:26:17: 15000000 INFO @ Tue, 16 Jun 2020 11:26:21: 10000000 INFO @ Tue, 16 Jun 2020 11:26:29: 16000000 INFO @ Tue, 16 Jun 2020 11:26:29: 13000000 INFO @ Tue, 16 Jun 2020 11:26:35: 11000000 INFO @ Tue, 16 Jun 2020 11:26:41: 17000000 INFO @ Tue, 16 Jun 2020 11:26:43: 14000000 INFO @ Tue, 16 Jun 2020 11:26:48: 12000000 INFO @ Tue, 16 Jun 2020 11:26:53: 18000000 INFO @ Tue, 16 Jun 2020 11:26:56: 15000000 INFO @ Tue, 16 Jun 2020 11:27:02: 13000000 INFO @ Tue, 16 Jun 2020 11:27:06: 19000000 INFO @ Tue, 16 Jun 2020 11:27:10: 16000000 INFO @ Tue, 16 Jun 2020 11:27:16: 14000000 INFO @ Tue, 16 Jun 2020 11:27:18: 20000000 INFO @ Tue, 16 Jun 2020 11:27:24: 17000000 INFO @ Tue, 16 Jun 2020 11:27:30: 15000000 INFO @ Tue, 16 Jun 2020 11:27:31: 21000000 INFO @ Tue, 16 Jun 2020 11:27:37: 18000000 INFO @ Tue, 16 Jun 2020 11:27:43: 22000000 INFO @ Tue, 16 Jun 2020 11:27:44: 16000000 INFO @ Tue, 16 Jun 2020 11:27:51: 19000000 INFO @ Tue, 16 Jun 2020 11:27:56: 23000000 INFO @ Tue, 16 Jun 2020 11:27:58: 17000000 INFO @ Tue, 16 Jun 2020 11:28:04: 20000000 INFO @ Tue, 16 Jun 2020 11:28:08: 24000000 INFO @ Tue, 16 Jun 2020 11:28:12: 18000000 INFO @ Tue, 16 Jun 2020 11:28:17: 21000000 INFO @ Tue, 16 Jun 2020 11:28:20: 25000000 INFO @ Tue, 16 Jun 2020 11:28:26: 19000000 INFO @ Tue, 16 Jun 2020 11:28:31: 22000000 INFO @ Tue, 16 Jun 2020 11:28:32: 26000000 INFO @ Tue, 16 Jun 2020 11:28:40: 20000000 INFO @ Tue, 16 Jun 2020 11:28:44: 27000000 INFO @ Tue, 16 Jun 2020 11:28:44: 23000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:28:54: 21000000 INFO @ Tue, 16 Jun 2020 11:28:56: 28000000 INFO @ Tue, 16 Jun 2020 11:28:58: 24000000 INFO @ Tue, 16 Jun 2020 11:29:07: 22000000 INFO @ Tue, 16 Jun 2020 11:29:08: 29000000 INFO @ Tue, 16 Jun 2020 11:29:11: 25000000 INFO @ Tue, 16 Jun 2020 11:29:20: 30000000 INFO @ Tue, 16 Jun 2020 11:29:21: 23000000 INFO @ Tue, 16 Jun 2020 11:29:25: 26000000 INFO @ Tue, 16 Jun 2020 11:29:32: 31000000 INFO @ Tue, 16 Jun 2020 11:29:34: 24000000 INFO @ Tue, 16 Jun 2020 11:29:39: 27000000 INFO @ Tue, 16 Jun 2020 11:29:43: 32000000 INFO @ Tue, 16 Jun 2020 11:29:47: 25000000 INFO @ Tue, 16 Jun 2020 11:29:52: 28000000 INFO @ Tue, 16 Jun 2020 11:29:55: 33000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:30:01: 26000000 INFO @ Tue, 16 Jun 2020 11:30:06: 29000000 INFO @ Tue, 16 Jun 2020 11:30:07: 34000000 INFO @ Tue, 16 Jun 2020 11:30:14: 27000000 INFO @ Tue, 16 Jun 2020 11:30:19: 35000000 INFO @ Tue, 16 Jun 2020 11:30:19: 30000000 INFO @ Tue, 16 Jun 2020 11:30:27: 28000000 INFO @ Tue, 16 Jun 2020 11:30:31: 36000000 INFO @ Tue, 16 Jun 2020 11:30:32: 31000000 INFO @ Tue, 16 Jun 2020 11:30:41: 29000000 INFO @ Tue, 16 Jun 2020 11:30:43: 37000000 INFO @ Tue, 16 Jun 2020 11:30:45: 32000000 INFO @ Tue, 16 Jun 2020 11:30:55: 30000000 INFO @ Tue, 16 Jun 2020 11:30:55: 38000000 INFO @ Tue, 16 Jun 2020 11:30:58: 33000000 INFO @ Tue, 16 Jun 2020 11:31:07: 39000000 INFO @ Tue, 16 Jun 2020 11:31:08: 31000000 INFO @ Tue, 16 Jun 2020 11:31:12: 34000000 INFO @ Tue, 16 Jun 2020 11:31:19: 40000000 INFO @ Tue, 16 Jun 2020 11:31:21: 32000000 INFO @ Tue, 16 Jun 2020 11:31:25: 35000000 INFO @ Tue, 16 Jun 2020 11:31:31: 41000000 INFO @ Tue, 16 Jun 2020 11:31:35: 33000000 INFO @ Tue, 16 Jun 2020 11:31:39: 36000000 INFO @ Tue, 16 Jun 2020 11:31:43: 42000000 INFO @ Tue, 16 Jun 2020 11:31:48: 34000000 INFO @ Tue, 16 Jun 2020 11:31:53: 37000000 INFO @ Tue, 16 Jun 2020 11:31:55: 43000000 INFO @ Tue, 16 Jun 2020 11:32:02: 35000000 INFO @ Tue, 16 Jun 2020 11:32:07: 38000000 INFO @ Tue, 16 Jun 2020 11:32:08: 44000000 INFO @ Tue, 16 Jun 2020 11:32:16: 36000000 INFO @ Tue, 16 Jun 2020 11:32:20: 45000000 INFO @ Tue, 16 Jun 2020 11:32:21: 39000000 INFO @ Tue, 16 Jun 2020 11:32:30: 37000000 INFO @ Tue, 16 Jun 2020 11:32:32: 46000000 INFO @ Tue, 16 Jun 2020 11:32:35: 40000000 INFO @ Tue, 16 Jun 2020 11:32:44: 38000000 INFO @ Tue, 16 Jun 2020 11:32:45: 47000000 INFO @ Tue, 16 Jun 2020 11:32:49: 41000000 INFO @ Tue, 16 Jun 2020 11:32:57: 48000000 INFO @ Tue, 16 Jun 2020 11:32:57: 39000000 INFO @ Tue, 16 Jun 2020 11:33:03: 42000000 INFO @ Tue, 16 Jun 2020 11:33:10: 49000000 INFO @ Tue, 16 Jun 2020 11:33:11: 40000000 INFO @ Tue, 16 Jun 2020 11:33:17: 43000000 INFO @ Tue, 16 Jun 2020 11:33:19: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:33:19: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:33:19: #1 total tags in treatment: 14607039 INFO @ Tue, 16 Jun 2020 11:33:19: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:33:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:33:19: #1 tags after filtering in treatment: 12439305 INFO @ Tue, 16 Jun 2020 11:33:19: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:33:19: #1 finished! INFO @ Tue, 16 Jun 2020 11:33:19: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:33:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:33:20: #2 number of paired peaks: 276 WARNING @ Tue, 16 Jun 2020 11:33:20: Fewer paired peaks (276) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 276 pairs to build model! INFO @ Tue, 16 Jun 2020 11:33:20: start model_add_line... INFO @ Tue, 16 Jun 2020 11:33:20: start X-correlation... INFO @ Tue, 16 Jun 2020 11:33:20: end of X-cor INFO @ Tue, 16 Jun 2020 11:33:20: #2 finished! INFO @ Tue, 16 Jun 2020 11:33:20: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:33:20: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:33:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.05_model.r WARNING @ Tue, 16 Jun 2020 11:33:20: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:33:20: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:33:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:33:20: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:33:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:33:25: 41000000 INFO @ Tue, 16 Jun 2020 11:33:31: 44000000 INFO @ Tue, 16 Jun 2020 11:33:39: 42000000 INFO @ Tue, 16 Jun 2020 11:33:45: 45000000 INFO @ Tue, 16 Jun 2020 11:33:46: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:33:52: 43000000 INFO @ Tue, 16 Jun 2020 11:33:58: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:33:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:33:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.05_summits.bed INFO @ Tue, 16 Jun 2020 11:33:58: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (446 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:34:00: 46000000 INFO @ Tue, 16 Jun 2020 11:34:06: 44000000 INFO @ Tue, 16 Jun 2020 11:34:14: 47000000 INFO @ Tue, 16 Jun 2020 11:34:20: 45000000 INFO @ Tue, 16 Jun 2020 11:34:28: 48000000 INFO @ Tue, 16 Jun 2020 11:34:34: 46000000 INFO @ Tue, 16 Jun 2020 11:34:42: 49000000 INFO @ Tue, 16 Jun 2020 11:34:47: 47000000 INFO @ Tue, 16 Jun 2020 11:34:52: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:34:52: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:34:52: #1 total tags in treatment: 14607039 INFO @ Tue, 16 Jun 2020 11:34:52: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:34:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:34:52: #1 tags after filtering in treatment: 12439305 INFO @ Tue, 16 Jun 2020 11:34:52: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:34:52: #1 finished! INFO @ Tue, 16 Jun 2020 11:34:52: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:34:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:34:53: #2 number of paired peaks: 276 WARNING @ Tue, 16 Jun 2020 11:34:53: Fewer paired peaks (276) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 276 pairs to build model! INFO @ Tue, 16 Jun 2020 11:34:53: start model_add_line... INFO @ Tue, 16 Jun 2020 11:34:53: start X-correlation... INFO @ Tue, 16 Jun 2020 11:34:53: end of X-cor INFO @ Tue, 16 Jun 2020 11:34:53: #2 finished! INFO @ Tue, 16 Jun 2020 11:34:53: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:34:53: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:34:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.10_model.r WARNING @ Tue, 16 Jun 2020 11:34:53: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:34:53: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:34:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:34:53: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:34:53: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:35:00: 48000000 INFO @ Tue, 16 Jun 2020 11:35:13: 49000000 INFO @ Tue, 16 Jun 2020 11:35:19: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:35:21: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:35:21: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:35:21: #1 total tags in treatment: 14607039 INFO @ Tue, 16 Jun 2020 11:35:21: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:35:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:35:22: #1 tags after filtering in treatment: 12439305 INFO @ Tue, 16 Jun 2020 11:35:22: #1 Redundant rate of treatment: 0.15 INFO @ Tue, 16 Jun 2020 11:35:22: #1 finished! INFO @ Tue, 16 Jun 2020 11:35:22: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:35:22: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:35:22: #2 number of paired peaks: 276 WARNING @ Tue, 16 Jun 2020 11:35:22: Fewer paired peaks (276) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 276 pairs to build model! INFO @ Tue, 16 Jun 2020 11:35:22: start model_add_line... INFO @ Tue, 16 Jun 2020 11:35:22: start X-correlation... INFO @ Tue, 16 Jun 2020 11:35:22: end of X-cor INFO @ Tue, 16 Jun 2020 11:35:22: #2 finished! INFO @ Tue, 16 Jun 2020 11:35:22: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:35:22: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:35:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.20_model.r WARNING @ Tue, 16 Jun 2020 11:35:22: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:35:22: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:35:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:35:22: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:35:22: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:35:31: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:35:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:35:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.10_summits.bed INFO @ Tue, 16 Jun 2020 11:35:31: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (317 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:35:48: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:36:00: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:36:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:36:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619533/SRX6619533.20_summits.bed INFO @ Tue, 16 Jun 2020 11:36:00: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (217 records, 4 fields): 1 millis CompletedMACS2peakCalling