Job ID = 6368832 SRX = SRX6619531 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:45 prefetch.2.10.7: 1) Downloading 'SRR9866078'... 2020-06-16T00:30:45 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:43:19 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:43:19 prefetch.2.10.7: 1) 'SRR9866078' was downloaded successfully 2020-06-16T00:43:19 prefetch.2.10.7: 'SRR9866078' has 0 unresolved dependencies Read 32382004 spots for SRR9866078/SRR9866078.sra Written 32382004 spots for SRR9866078/SRR9866078.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:04:53 32382004 reads; of these: 32382004 (100.00%) were paired; of these: 16044073 (49.55%) aligned concordantly 0 times 13665138 (42.20%) aligned concordantly exactly 1 time 2672793 (8.25%) aligned concordantly >1 times ---- 16044073 pairs aligned concordantly 0 times; of these: 9513690 (59.30%) aligned discordantly 1 time ---- 6530383 pairs aligned 0 times concordantly or discordantly; of these: 13060766 mates make up the pairs; of these: 9702412 (74.29%) aligned 0 times 1560680 (11.95%) aligned exactly 1 time 1797674 (13.76%) aligned >1 times 85.02% overall alignment rate Time searching: 01:04:53 Overall time: 01:04:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3194906 / 25059796 = 0.1275 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:20:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:20:28: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:20:28: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:20:36: 1000000 INFO @ Tue, 16 Jun 2020 11:20:44: 2000000 INFO @ Tue, 16 Jun 2020 11:20:53: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:20:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:20:58: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:20:58: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:03: 4000000 INFO @ Tue, 16 Jun 2020 11:21:08: 1000000 INFO @ Tue, 16 Jun 2020 11:21:13: 5000000 INFO @ Tue, 16 Jun 2020 11:21:17: 2000000 INFO @ Tue, 16 Jun 2020 11:21:23: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:21:26: 3000000 INFO @ Tue, 16 Jun 2020 11:21:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:21:28: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:21:28: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:33: 7000000 INFO @ Tue, 16 Jun 2020 11:21:35: 4000000 INFO @ Tue, 16 Jun 2020 11:21:37: 1000000 INFO @ Tue, 16 Jun 2020 11:21:43: 8000000 INFO @ Tue, 16 Jun 2020 11:21:44: 5000000 INFO @ Tue, 16 Jun 2020 11:21:46: 2000000 INFO @ Tue, 16 Jun 2020 11:21:53: 6000000 INFO @ Tue, 16 Jun 2020 11:21:54: 9000000 INFO @ Tue, 16 Jun 2020 11:21:56: 3000000 INFO @ Tue, 16 Jun 2020 11:22:02: 7000000 INFO @ Tue, 16 Jun 2020 11:22:04: 10000000 INFO @ Tue, 16 Jun 2020 11:22:06: 4000000 INFO @ Tue, 16 Jun 2020 11:22:11: 8000000 INFO @ Tue, 16 Jun 2020 11:22:14: 11000000 INFO @ Tue, 16 Jun 2020 11:22:16: 5000000 INFO @ Tue, 16 Jun 2020 11:22:19: 9000000 INFO @ Tue, 16 Jun 2020 11:22:23: 12000000 INFO @ Tue, 16 Jun 2020 11:22:26: 6000000 INFO @ Tue, 16 Jun 2020 11:22:28: 10000000 INFO @ Tue, 16 Jun 2020 11:22:33: 13000000 INFO @ Tue, 16 Jun 2020 11:22:36: 7000000 INFO @ Tue, 16 Jun 2020 11:22:37: 11000000 INFO @ Tue, 16 Jun 2020 11:22:42: 14000000 INFO @ Tue, 16 Jun 2020 11:22:46: 12000000 INFO @ Tue, 16 Jun 2020 11:22:46: 8000000 INFO @ Tue, 16 Jun 2020 11:22:51: 15000000 INFO @ Tue, 16 Jun 2020 11:22:56: 13000000 INFO @ Tue, 16 Jun 2020 11:22:56: 9000000 INFO @ Tue, 16 Jun 2020 11:23:00: 16000000 INFO @ Tue, 16 Jun 2020 11:23:07: 10000000 INFO @ Tue, 16 Jun 2020 11:23:07: 14000000 INFO @ Tue, 16 Jun 2020 11:23:09: 17000000 INFO @ Tue, 16 Jun 2020 11:23:17: 11000000 INFO @ Tue, 16 Jun 2020 11:23:18: 15000000 INFO @ Tue, 16 Jun 2020 11:23:18: 18000000 INFO @ Tue, 16 Jun 2020 11:23:27: 12000000 INFO @ Tue, 16 Jun 2020 11:23:28: 19000000 INFO @ Tue, 16 Jun 2020 11:23:28: 16000000 INFO @ Tue, 16 Jun 2020 11:23:36: 13000000 INFO @ Tue, 16 Jun 2020 11:23:38: 20000000 INFO @ Tue, 16 Jun 2020 11:23:39: 17000000 INFO @ Tue, 16 Jun 2020 11:23:45: 14000000 INFO @ Tue, 16 Jun 2020 11:23:48: 21000000 INFO @ Tue, 16 Jun 2020 11:23:49: 18000000 INFO @ Tue, 16 Jun 2020 11:23:54: 15000000 INFO @ Tue, 16 Jun 2020 11:23:58: 22000000 INFO @ Tue, 16 Jun 2020 11:23:58: 19000000 INFO @ Tue, 16 Jun 2020 11:24:03: 16000000 INFO @ Tue, 16 Jun 2020 11:24:07: 20000000 INFO @ Tue, 16 Jun 2020 11:24:08: 23000000 INFO @ Tue, 16 Jun 2020 11:24:13: 17000000 INFO @ Tue, 16 Jun 2020 11:24:16: 21000000 INFO @ Tue, 16 Jun 2020 11:24:19: 24000000 INFO @ Tue, 16 Jun 2020 11:24:22: 18000000 INFO @ Tue, 16 Jun 2020 11:24:26: 22000000 INFO @ Tue, 16 Jun 2020 11:24:28: 25000000 INFO @ Tue, 16 Jun 2020 11:24:33: 19000000 INFO @ Tue, 16 Jun 2020 11:24:35: 23000000 INFO @ Tue, 16 Jun 2020 11:24:37: 26000000 INFO @ Tue, 16 Jun 2020 11:24:43: 20000000 INFO @ Tue, 16 Jun 2020 11:24:44: 24000000 INFO @ Tue, 16 Jun 2020 11:24:46: 27000000 INFO @ Tue, 16 Jun 2020 11:24:52: 21000000 INFO @ Tue, 16 Jun 2020 11:24:54: 25000000 INFO @ Tue, 16 Jun 2020 11:24:55: 28000000 INFO @ Tue, 16 Jun 2020 11:25:02: 22000000 INFO @ Tue, 16 Jun 2020 11:25:04: 26000000 INFO @ Tue, 16 Jun 2020 11:25:04: 29000000 INFO @ Tue, 16 Jun 2020 11:25:13: 23000000 INFO @ Tue, 16 Jun 2020 11:25:13: 30000000 INFO @ Tue, 16 Jun 2020 11:25:14: 27000000 INFO @ Tue, 16 Jun 2020 11:25:22: 31000000 INFO @ Tue, 16 Jun 2020 11:25:23: 24000000 INFO @ Tue, 16 Jun 2020 11:25:25: 28000000 INFO @ Tue, 16 Jun 2020 11:25:31: 32000000 INFO @ Tue, 16 Jun 2020 11:25:32: 25000000 INFO @ Tue, 16 Jun 2020 11:25:35: 29000000 INFO @ Tue, 16 Jun 2020 11:25:40: 33000000 INFO @ Tue, 16 Jun 2020 11:25:41: 26000000 INFO @ Tue, 16 Jun 2020 11:25:45: 30000000 INFO @ Tue, 16 Jun 2020 11:25:49: 34000000 INFO @ Tue, 16 Jun 2020 11:25:50: 27000000 INFO @ Tue, 16 Jun 2020 11:25:55: 31000000 INFO @ Tue, 16 Jun 2020 11:25:58: 35000000 INFO @ Tue, 16 Jun 2020 11:25:59: 28000000 INFO @ Tue, 16 Jun 2020 11:26:05: 32000000 INFO @ Tue, 16 Jun 2020 11:26:07: 36000000 INFO @ Tue, 16 Jun 2020 11:26:09: 29000000 INFO @ Tue, 16 Jun 2020 11:26:15: 33000000 INFO @ Tue, 16 Jun 2020 11:26:16: 37000000 INFO @ Tue, 16 Jun 2020 11:26:18: 30000000 INFO @ Tue, 16 Jun 2020 11:26:25: 34000000 INFO @ Tue, 16 Jun 2020 11:26:25: 38000000 INFO @ Tue, 16 Jun 2020 11:26:27: 31000000 INFO @ Tue, 16 Jun 2020 11:26:34: 39000000 INFO @ Tue, 16 Jun 2020 11:26:35: 35000000 INFO @ Tue, 16 Jun 2020 11:26:36: 32000000 INFO @ Tue, 16 Jun 2020 11:26:44: 40000000 INFO @ Tue, 16 Jun 2020 11:26:44: 36000000 INFO @ Tue, 16 Jun 2020 11:26:45: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:26:53: 41000000 INFO @ Tue, 16 Jun 2020 11:26:54: 34000000 INFO @ Tue, 16 Jun 2020 11:26:54: 37000000 INFO @ Tue, 16 Jun 2020 11:27:02: 42000000 INFO @ Tue, 16 Jun 2020 11:27:03: 35000000 INFO @ Tue, 16 Jun 2020 11:27:04: 38000000 INFO @ Tue, 16 Jun 2020 11:27:11: 43000000 INFO @ Tue, 16 Jun 2020 11:27:11: 36000000 INFO @ Tue, 16 Jun 2020 11:27:14: 39000000 INFO @ Tue, 16 Jun 2020 11:27:20: 44000000 INFO @ Tue, 16 Jun 2020 11:27:20: 37000000 INFO @ Tue, 16 Jun 2020 11:27:23: 40000000 INFO @ Tue, 16 Jun 2020 11:27:29: 45000000 INFO @ Tue, 16 Jun 2020 11:27:29: 38000000 INFO @ Tue, 16 Jun 2020 11:27:33: 41000000 INFO @ Tue, 16 Jun 2020 11:27:37: 46000000 INFO @ Tue, 16 Jun 2020 11:27:39: 39000000 INFO @ Tue, 16 Jun 2020 11:27:43: 42000000 INFO @ Tue, 16 Jun 2020 11:27:46: 47000000 INFO @ Tue, 16 Jun 2020 11:27:48: 40000000 INFO @ Tue, 16 Jun 2020 11:27:53: 43000000 INFO @ Tue, 16 Jun 2020 11:27:55: 48000000 INFO @ Tue, 16 Jun 2020 11:27:57: 41000000 INFO @ Tue, 16 Jun 2020 11:28:01: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:01: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:01: #1 total tags in treatment: 14187695 INFO @ Tue, 16 Jun 2020 11:28:01: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:01: #1 tags after filtering in treatment: 12162345 INFO @ Tue, 16 Jun 2020 11:28:01: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:28:01: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:01: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:01: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:02: #2 number of paired peaks: 270 WARNING @ Tue, 16 Jun 2020 11:28:02: Fewer paired peaks (270) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 270 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:02: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:02: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:02: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:02: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:02: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:28:02: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:28:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.05_model.r WARNING @ Tue, 16 Jun 2020 11:28:02: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:02: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:28:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:02: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:03: 44000000 INFO @ Tue, 16 Jun 2020 11:28:05: 42000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:28:13: 45000000 INFO @ Tue, 16 Jun 2020 11:28:14: 43000000 INFO @ Tue, 16 Jun 2020 11:28:23: 46000000 INFO @ Tue, 16 Jun 2020 11:28:23: 44000000 INFO @ Tue, 16 Jun 2020 11:28:29: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:32: 45000000 INFO @ Tue, 16 Jun 2020 11:28:32: 47000000 INFO @ Tue, 16 Jun 2020 11:28:40: 46000000 INFO @ Tue, 16 Jun 2020 11:28:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.05_summits.bed INFO @ Tue, 16 Jun 2020 11:28:42: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (436 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:28:42: 48000000 INFO @ Tue, 16 Jun 2020 11:28:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:49: #1 total tags in treatment: 14187695 INFO @ Tue, 16 Jun 2020 11:28:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:49: 47000000 INFO @ Tue, 16 Jun 2020 11:28:49: #1 tags after filtering in treatment: 12162345 INFO @ Tue, 16 Jun 2020 11:28:49: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:28:49: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:49: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:50: #2 number of paired peaks: 270 WARNING @ Tue, 16 Jun 2020 11:28:50: Fewer paired peaks (270) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 270 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:50: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:50: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:50: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:50: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:50: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:28:50: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:28:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.10_model.r WARNING @ Tue, 16 Jun 2020 11:28:50: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:50: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:28:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:57: 48000000 INFO @ Tue, 16 Jun 2020 11:29:03: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:29:03: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:29:03: #1 total tags in treatment: 14187695 INFO @ Tue, 16 Jun 2020 11:29:03: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:29:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:29:03: #1 tags after filtering in treatment: 12162345 INFO @ Tue, 16 Jun 2020 11:29:03: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:29:03: #1 finished! INFO @ Tue, 16 Jun 2020 11:29:03: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:29:03: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:29:04: #2 number of paired peaks: 270 WARNING @ Tue, 16 Jun 2020 11:29:04: Fewer paired peaks (270) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 270 pairs to build model! INFO @ Tue, 16 Jun 2020 11:29:04: start model_add_line... INFO @ Tue, 16 Jun 2020 11:29:04: start X-correlation... INFO @ Tue, 16 Jun 2020 11:29:04: end of X-cor INFO @ Tue, 16 Jun 2020 11:29:04: #2 finished! INFO @ Tue, 16 Jun 2020 11:29:04: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:29:04: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:29:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.20_model.r WARNING @ Tue, 16 Jun 2020 11:29:04: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:29:04: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:29:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:29:04: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:29:04: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:29:16: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:29:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:29:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:29:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.10_summits.bed INFO @ Tue, 16 Jun 2020 11:29:28: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (320 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:29:31: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:29:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:29:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:29:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619531/SRX6619531.20_summits.bed INFO @ Tue, 16 Jun 2020 11:29:43: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (225 records, 4 fields): 2 millis CompletedMACS2peakCalling