Job ID = 6368460 SRX = SRX4996817 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:22:48 prefetch.2.10.7: 1) Downloading 'SRR8176702'... 2020-06-16T00:22:48 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:28:03 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:28:03 prefetch.2.10.7: 1) 'SRR8176702' was downloaded successfully 2020-06-16T00:28:03 prefetch.2.10.7: 'SRR8176702' has 0 unresolved dependencies Read 24003965 spots for SRR8176702/SRR8176702.sra Written 24003965 spots for SRR8176702/SRR8176702.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:21:20 24003965 reads; of these: 24003965 (100.00%) were paired; of these: 823160 (3.43%) aligned concordantly 0 times 19782142 (82.41%) aligned concordantly exactly 1 time 3398663 (14.16%) aligned concordantly >1 times ---- 823160 pairs aligned concordantly 0 times; of these: 325139 (39.50%) aligned discordantly 1 time ---- 498021 pairs aligned 0 times concordantly or discordantly; of these: 996042 mates make up the pairs; of these: 656858 (65.95%) aligned 0 times 217545 (21.84%) aligned exactly 1 time 121639 (12.21%) aligned >1 times 98.63% overall alignment rate Time searching: 00:21:20 Overall time: 00:21:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 553407 / 23492456 = 0.0236 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:03:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:03:02: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:03:02: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:03:07: 1000000 INFO @ Tue, 16 Jun 2020 10:03:12: 2000000 INFO @ Tue, 16 Jun 2020 10:03:17: 3000000 INFO @ Tue, 16 Jun 2020 10:03:22: 4000000 INFO @ Tue, 16 Jun 2020 10:03:27: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:03:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:03:31: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:03:31: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:03:32: 6000000 INFO @ Tue, 16 Jun 2020 10:03:36: 1000000 INFO @ Tue, 16 Jun 2020 10:03:37: 7000000 INFO @ Tue, 16 Jun 2020 10:03:42: 2000000 INFO @ Tue, 16 Jun 2020 10:03:42: 8000000 INFO @ Tue, 16 Jun 2020 10:03:47: 3000000 INFO @ Tue, 16 Jun 2020 10:03:47: 9000000 INFO @ Tue, 16 Jun 2020 10:03:52: 4000000 INFO @ Tue, 16 Jun 2020 10:03:53: 10000000 INFO @ Tue, 16 Jun 2020 10:03:57: 5000000 INFO @ Tue, 16 Jun 2020 10:03:58: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:04:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:04:01: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:04:01: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:04:03: 6000000 INFO @ Tue, 16 Jun 2020 10:04:03: 12000000 INFO @ Tue, 16 Jun 2020 10:04:07: 1000000 INFO @ Tue, 16 Jun 2020 10:04:08: 7000000 INFO @ Tue, 16 Jun 2020 10:04:09: 13000000 INFO @ Tue, 16 Jun 2020 10:04:12: 2000000 INFO @ Tue, 16 Jun 2020 10:04:13: 8000000 INFO @ Tue, 16 Jun 2020 10:04:14: 14000000 INFO @ Tue, 16 Jun 2020 10:04:17: 3000000 INFO @ Tue, 16 Jun 2020 10:04:19: 9000000 INFO @ Tue, 16 Jun 2020 10:04:19: 15000000 INFO @ Tue, 16 Jun 2020 10:04:22: 4000000 INFO @ Tue, 16 Jun 2020 10:04:24: 10000000 INFO @ Tue, 16 Jun 2020 10:04:25: 16000000 INFO @ Tue, 16 Jun 2020 10:04:27: 5000000 INFO @ Tue, 16 Jun 2020 10:04:29: 11000000 INFO @ Tue, 16 Jun 2020 10:04:30: 17000000 INFO @ Tue, 16 Jun 2020 10:04:33: 6000000 INFO @ Tue, 16 Jun 2020 10:04:34: 12000000 INFO @ Tue, 16 Jun 2020 10:04:35: 18000000 INFO @ Tue, 16 Jun 2020 10:04:38: 7000000 INFO @ Tue, 16 Jun 2020 10:04:39: 13000000 INFO @ Tue, 16 Jun 2020 10:04:40: 19000000 INFO @ Tue, 16 Jun 2020 10:04:43: 8000000 INFO @ Tue, 16 Jun 2020 10:04:45: 14000000 INFO @ Tue, 16 Jun 2020 10:04:45: 20000000 INFO @ Tue, 16 Jun 2020 10:04:48: 9000000 INFO @ Tue, 16 Jun 2020 10:04:50: 15000000 INFO @ Tue, 16 Jun 2020 10:04:51: 21000000 INFO @ Tue, 16 Jun 2020 10:04:53: 10000000 INFO @ Tue, 16 Jun 2020 10:04:55: 16000000 INFO @ Tue, 16 Jun 2020 10:04:56: 22000000 INFO @ Tue, 16 Jun 2020 10:04:58: 11000000 INFO @ Tue, 16 Jun 2020 10:05:00: 17000000 INFO @ Tue, 16 Jun 2020 10:05:01: 23000000 INFO @ Tue, 16 Jun 2020 10:05:03: 12000000 INFO @ Tue, 16 Jun 2020 10:05:05: 18000000 INFO @ Tue, 16 Jun 2020 10:05:06: 24000000 INFO @ Tue, 16 Jun 2020 10:05:09: 13000000 INFO @ Tue, 16 Jun 2020 10:05:11: 19000000 INFO @ Tue, 16 Jun 2020 10:05:12: 25000000 INFO @ Tue, 16 Jun 2020 10:05:14: 14000000 INFO @ Tue, 16 Jun 2020 10:05:16: 20000000 INFO @ Tue, 16 Jun 2020 10:05:17: 26000000 INFO @ Tue, 16 Jun 2020 10:05:19: 15000000 INFO @ Tue, 16 Jun 2020 10:05:21: 21000000 INFO @ Tue, 16 Jun 2020 10:05:22: 27000000 INFO @ Tue, 16 Jun 2020 10:05:25: 16000000 INFO @ Tue, 16 Jun 2020 10:05:27: 22000000 INFO @ Tue, 16 Jun 2020 10:05:28: 28000000 INFO @ Tue, 16 Jun 2020 10:05:30: 17000000 INFO @ Tue, 16 Jun 2020 10:05:32: 23000000 INFO @ Tue, 16 Jun 2020 10:05:33: 29000000 INFO @ Tue, 16 Jun 2020 10:05:35: 18000000 INFO @ Tue, 16 Jun 2020 10:05:37: 24000000 INFO @ Tue, 16 Jun 2020 10:05:38: 30000000 INFO @ Tue, 16 Jun 2020 10:05:40: 19000000 INFO @ Tue, 16 Jun 2020 10:05:43: 25000000 INFO @ Tue, 16 Jun 2020 10:05:43: 31000000 INFO @ Tue, 16 Jun 2020 10:05:46: 20000000 INFO @ Tue, 16 Jun 2020 10:05:48: 26000000 INFO @ Tue, 16 Jun 2020 10:05:49: 32000000 INFO @ Tue, 16 Jun 2020 10:05:51: 21000000 INFO @ Tue, 16 Jun 2020 10:05:53: 27000000 INFO @ Tue, 16 Jun 2020 10:05:54: 33000000 INFO @ Tue, 16 Jun 2020 10:05:56: 22000000 INFO @ Tue, 16 Jun 2020 10:05:58: 28000000 INFO @ Tue, 16 Jun 2020 10:05:59: 34000000 INFO @ Tue, 16 Jun 2020 10:06:02: 23000000 INFO @ Tue, 16 Jun 2020 10:06:04: 29000000 INFO @ Tue, 16 Jun 2020 10:06:04: 35000000 INFO @ Tue, 16 Jun 2020 10:06:07: 24000000 INFO @ Tue, 16 Jun 2020 10:06:09: 30000000 INFO @ Tue, 16 Jun 2020 10:06:10: 36000000 INFO @ Tue, 16 Jun 2020 10:06:12: 25000000 INFO @ Tue, 16 Jun 2020 10:06:14: 31000000 INFO @ Tue, 16 Jun 2020 10:06:15: 37000000 INFO @ Tue, 16 Jun 2020 10:06:18: 26000000 INFO @ Tue, 16 Jun 2020 10:06:20: 32000000 INFO @ Tue, 16 Jun 2020 10:06:20: 38000000 INFO @ Tue, 16 Jun 2020 10:06:23: 27000000 INFO @ Tue, 16 Jun 2020 10:06:25: 33000000 INFO @ Tue, 16 Jun 2020 10:06:26: 39000000 INFO @ Tue, 16 Jun 2020 10:06:28: 28000000 INFO @ Tue, 16 Jun 2020 10:06:30: 34000000 INFO @ Tue, 16 Jun 2020 10:06:31: 40000000 INFO @ Tue, 16 Jun 2020 10:06:33: 29000000 INFO @ Tue, 16 Jun 2020 10:06:36: 35000000 INFO @ Tue, 16 Jun 2020 10:06:36: 41000000 INFO @ Tue, 16 Jun 2020 10:06:39: 30000000 INFO @ Tue, 16 Jun 2020 10:06:41: 36000000 INFO @ Tue, 16 Jun 2020 10:06:41: 42000000 INFO @ Tue, 16 Jun 2020 10:06:44: 31000000 INFO @ Tue, 16 Jun 2020 10:06:46: 37000000 INFO @ Tue, 16 Jun 2020 10:06:47: 43000000 INFO @ Tue, 16 Jun 2020 10:06:49: 32000000 INFO @ Tue, 16 Jun 2020 10:06:52: 38000000 INFO @ Tue, 16 Jun 2020 10:06:52: 44000000 INFO @ Tue, 16 Jun 2020 10:06:55: 33000000 INFO @ Tue, 16 Jun 2020 10:06:57: 39000000 INFO @ Tue, 16 Jun 2020 10:06:57: 45000000 INFO @ Tue, 16 Jun 2020 10:07:00: 34000000 INFO @ Tue, 16 Jun 2020 10:07:02: 40000000 INFO @ Tue, 16 Jun 2020 10:07:03: 46000000 INFO @ Tue, 16 Jun 2020 10:07:04: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 10:07:04: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 10:07:04: #1 total tags in treatment: 22630152 INFO @ Tue, 16 Jun 2020 10:07:04: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:07:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:07:04: #1 tags after filtering in treatment: 20273441 INFO @ Tue, 16 Jun 2020 10:07:04: #1 Redundant rate of treatment: 0.10 INFO @ Tue, 16 Jun 2020 10:07:04: #1 finished! INFO @ Tue, 16 Jun 2020 10:07:04: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:07:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:07:05: 35000000 INFO @ Tue, 16 Jun 2020 10:07:06: #2 number of paired peaks: 279 WARNING @ Tue, 16 Jun 2020 10:07:06: Fewer paired peaks (279) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 279 pairs to build model! INFO @ Tue, 16 Jun 2020 10:07:06: start model_add_line... INFO @ Tue, 16 Jun 2020 10:07:06: start X-correlation... INFO @ Tue, 16 Jun 2020 10:07:06: end of X-cor INFO @ Tue, 16 Jun 2020 10:07:06: #2 finished! INFO @ Tue, 16 Jun 2020 10:07:06: #2 predicted fragment length is 94 bps INFO @ Tue, 16 Jun 2020 10:07:06: #2 alternative fragment length(s) may be 3,94,100,120 bps INFO @ Tue, 16 Jun 2020 10:07:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.05_model.r WARNING @ Tue, 16 Jun 2020 10:07:06: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 10:07:06: #2 You may need to consider one of the other alternative d(s): 3,94,100,120 WARNING @ Tue, 16 Jun 2020 10:07:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 10:07:06: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:07:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:07:07: 41000000 INFO @ Tue, 16 Jun 2020 10:07:10: 36000000 INFO @ Tue, 16 Jun 2020 10:07:13: 42000000 INFO @ Tue, 16 Jun 2020 10:07:16: 37000000 INFO @ Tue, 16 Jun 2020 10:07:18: 43000000 INFO @ Tue, 16 Jun 2020 10:07:21: 38000000 INFO @ Tue, 16 Jun 2020 10:07:23: 44000000 INFO @ Tue, 16 Jun 2020 10:07:27: 39000000 INFO @ Tue, 16 Jun 2020 10:07:29: 45000000 INFO @ Tue, 16 Jun 2020 10:07:32: 40000000 INFO @ Tue, 16 Jun 2020 10:07:34: 46000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 10:07:35: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 10:07:35: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 10:07:35: #1 total tags in treatment: 22630152 INFO @ Tue, 16 Jun 2020 10:07:35: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:07:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:07:36: #1 tags after filtering in treatment: 20273441 INFO @ Tue, 16 Jun 2020 10:07:36: #1 Redundant rate of treatment: 0.10 INFO @ Tue, 16 Jun 2020 10:07:36: #1 finished! INFO @ Tue, 16 Jun 2020 10:07:36: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:07:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:07:37: 41000000 INFO @ Tue, 16 Jun 2020 10:07:37: #2 number of paired peaks: 279 WARNING @ Tue, 16 Jun 2020 10:07:37: Fewer paired peaks (279) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 279 pairs to build model! INFO @ Tue, 16 Jun 2020 10:07:37: start model_add_line... INFO @ Tue, 16 Jun 2020 10:07:37: start X-correlation... INFO @ Tue, 16 Jun 2020 10:07:38: end of X-cor INFO @ Tue, 16 Jun 2020 10:07:38: #2 finished! INFO @ Tue, 16 Jun 2020 10:07:38: #2 predicted fragment length is 94 bps INFO @ Tue, 16 Jun 2020 10:07:38: #2 alternative fragment length(s) may be 3,94,100,120 bps INFO @ Tue, 16 Jun 2020 10:07:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.10_model.r WARNING @ Tue, 16 Jun 2020 10:07:38: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 10:07:38: #2 You may need to consider one of the other alternative d(s): 3,94,100,120 WARNING @ Tue, 16 Jun 2020 10:07:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 10:07:38: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:07:38: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:07:42: 42000000 INFO @ Tue, 16 Jun 2020 10:07:43: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:07:47: 43000000 INFO @ Tue, 16 Jun 2020 10:07:52: 44000000 INFO @ Tue, 16 Jun 2020 10:07:57: 45000000 INFO @ Tue, 16 Jun 2020 10:08:01: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.05_peaks.xls INFO @ Tue, 16 Jun 2020 10:08:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:08:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.05_summits.bed INFO @ Tue, 16 Jun 2020 10:08:01: Done! INFO @ Tue, 16 Jun 2020 10:08:02: 46000000 pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (572 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:08:03: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 10:08:03: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 10:08:03: #1 total tags in treatment: 22630152 INFO @ Tue, 16 Jun 2020 10:08:03: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:08:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:08:04: #1 tags after filtering in treatment: 20273441 INFO @ Tue, 16 Jun 2020 10:08:04: #1 Redundant rate of treatment: 0.10 INFO @ Tue, 16 Jun 2020 10:08:04: #1 finished! INFO @ Tue, 16 Jun 2020 10:08:04: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:08:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:08:05: #2 number of paired peaks: 279 WARNING @ Tue, 16 Jun 2020 10:08:05: Fewer paired peaks (279) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 279 pairs to build model! INFO @ Tue, 16 Jun 2020 10:08:05: start model_add_line... INFO @ Tue, 16 Jun 2020 10:08:05: start X-correlation... INFO @ Tue, 16 Jun 2020 10:08:05: end of X-cor INFO @ Tue, 16 Jun 2020 10:08:05: #2 finished! INFO @ Tue, 16 Jun 2020 10:08:05: #2 predicted fragment length is 94 bps INFO @ Tue, 16 Jun 2020 10:08:05: #2 alternative fragment length(s) may be 3,94,100,120 bps INFO @ Tue, 16 Jun 2020 10:08:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.20_model.r WARNING @ Tue, 16 Jun 2020 10:08:05: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 10:08:05: #2 You may need to consider one of the other alternative d(s): 3,94,100,120 WARNING @ Tue, 16 Jun 2020 10:08:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 10:08:05: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:08:05: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:08:15: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:08:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.10_peaks.xls INFO @ Tue, 16 Jun 2020 10:08:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:08:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.10_summits.bed INFO @ Tue, 16 Jun 2020 10:08:32: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (407 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:08:41: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 10:08:58: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.20_peaks.xls INFO @ Tue, 16 Jun 2020 10:08:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:08:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4996817/SRX4996817.20_summits.bed INFO @ Tue, 16 Jun 2020 10:08:58: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (222 records, 4 fields): 1 millis CompletedMACS2peakCalling