Job ID = 6368456 SRX = SRX4996813 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:16:21 prefetch.2.10.7: 1) Downloading 'SRR8176698'... 2020-06-16T00:16:21 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:22:24 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:22:24 prefetch.2.10.7: 1) 'SRR8176698' was downloaded successfully 2020-06-16T00:22:24 prefetch.2.10.7: 'SRR8176698' has 0 unresolved dependencies Read 25345452 spots for SRR8176698/SRR8176698.sra Written 25345452 spots for SRR8176698/SRR8176698.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:21:27 25345452 reads; of these: 25345452 (100.00%) were paired; of these: 1073877 (4.24%) aligned concordantly 0 times 20914592 (82.52%) aligned concordantly exactly 1 time 3356983 (13.24%) aligned concordantly >1 times ---- 1073877 pairs aligned concordantly 0 times; of these: 554520 (51.64%) aligned discordantly 1 time ---- 519357 pairs aligned 0 times concordantly or discordantly; of these: 1038714 mates make up the pairs; of these: 575242 (55.38%) aligned 0 times 293853 (28.29%) aligned exactly 1 time 169619 (16.33%) aligned >1 times 98.87% overall alignment rate Time searching: 00:21:27 Overall time: 00:21:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 416123 / 24809317 = 0.0168 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:58:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:58:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:58:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:58:22: 1000000 INFO @ Tue, 16 Jun 2020 09:58:26: 2000000 INFO @ Tue, 16 Jun 2020 09:58:31: 3000000 INFO @ Tue, 16 Jun 2020 09:58:36: 4000000 INFO @ Tue, 16 Jun 2020 09:58:41: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:58:45: 6000000 INFO @ Tue, 16 Jun 2020 09:58:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:58:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:58:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:58:50: 7000000 INFO @ Tue, 16 Jun 2020 09:58:52: 1000000 INFO @ Tue, 16 Jun 2020 09:58:55: 8000000 INFO @ Tue, 16 Jun 2020 09:58:57: 2000000 INFO @ Tue, 16 Jun 2020 09:59:00: 9000000 INFO @ Tue, 16 Jun 2020 09:59:02: 3000000 INFO @ Tue, 16 Jun 2020 09:59:05: 10000000 INFO @ Tue, 16 Jun 2020 09:59:07: 4000000 INFO @ Tue, 16 Jun 2020 09:59:10: 11000000 INFO @ Tue, 16 Jun 2020 09:59:12: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:59:15: 12000000 INFO @ Tue, 16 Jun 2020 09:59:16: 6000000 INFO @ Tue, 16 Jun 2020 09:59:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:59:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:59:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:59:20: 13000000 INFO @ Tue, 16 Jun 2020 09:59:21: 7000000 INFO @ Tue, 16 Jun 2020 09:59:22: 1000000 INFO @ Tue, 16 Jun 2020 09:59:24: 14000000 INFO @ Tue, 16 Jun 2020 09:59:26: 8000000 INFO @ Tue, 16 Jun 2020 09:59:27: 2000000 INFO @ Tue, 16 Jun 2020 09:59:29: 15000000 INFO @ Tue, 16 Jun 2020 09:59:31: 9000000 INFO @ Tue, 16 Jun 2020 09:59:32: 3000000 INFO @ Tue, 16 Jun 2020 09:59:34: 16000000 INFO @ Tue, 16 Jun 2020 09:59:36: 10000000 INFO @ Tue, 16 Jun 2020 09:59:37: 4000000 INFO @ Tue, 16 Jun 2020 09:59:39: 17000000 INFO @ Tue, 16 Jun 2020 09:59:41: 11000000 INFO @ Tue, 16 Jun 2020 09:59:42: 5000000 INFO @ Tue, 16 Jun 2020 09:59:44: 18000000 INFO @ Tue, 16 Jun 2020 09:59:46: 12000000 INFO @ Tue, 16 Jun 2020 09:59:46: 6000000 INFO @ Tue, 16 Jun 2020 09:59:49: 19000000 INFO @ Tue, 16 Jun 2020 09:59:51: 13000000 INFO @ Tue, 16 Jun 2020 09:59:52: 7000000 INFO @ Tue, 16 Jun 2020 09:59:54: 20000000 INFO @ Tue, 16 Jun 2020 09:59:56: 14000000 INFO @ Tue, 16 Jun 2020 09:59:57: 8000000 INFO @ Tue, 16 Jun 2020 09:59:59: 21000000 INFO @ Tue, 16 Jun 2020 10:00:01: 15000000 INFO @ Tue, 16 Jun 2020 10:00:02: 9000000 INFO @ Tue, 16 Jun 2020 10:00:04: 22000000 INFO @ Tue, 16 Jun 2020 10:00:06: 16000000 INFO @ Tue, 16 Jun 2020 10:00:07: 10000000 INFO @ Tue, 16 Jun 2020 10:00:09: 23000000 INFO @ Tue, 16 Jun 2020 10:00:11: 17000000 INFO @ Tue, 16 Jun 2020 10:00:11: 11000000 INFO @ Tue, 16 Jun 2020 10:00:13: 24000000 INFO @ Tue, 16 Jun 2020 10:00:16: 18000000 INFO @ Tue, 16 Jun 2020 10:00:16: 12000000 INFO @ Tue, 16 Jun 2020 10:00:18: 25000000 INFO @ Tue, 16 Jun 2020 10:00:20: 19000000 INFO @ Tue, 16 Jun 2020 10:00:21: 13000000 INFO @ Tue, 16 Jun 2020 10:00:23: 26000000 INFO @ Tue, 16 Jun 2020 10:00:25: 20000000 INFO @ Tue, 16 Jun 2020 10:00:26: 14000000 INFO @ Tue, 16 Jun 2020 10:00:28: 27000000 INFO @ Tue, 16 Jun 2020 10:00:30: 21000000 INFO @ Tue, 16 Jun 2020 10:00:31: 15000000 INFO @ Tue, 16 Jun 2020 10:00:33: 28000000 INFO @ Tue, 16 Jun 2020 10:00:35: 22000000 INFO @ Tue, 16 Jun 2020 10:00:36: 16000000 INFO @ Tue, 16 Jun 2020 10:00:38: 29000000 INFO @ Tue, 16 Jun 2020 10:00:40: 23000000 INFO @ Tue, 16 Jun 2020 10:00:40: 17000000 INFO @ Tue, 16 Jun 2020 10:00:43: 30000000 INFO @ Tue, 16 Jun 2020 10:00:45: 24000000 INFO @ Tue, 16 Jun 2020 10:00:45: 18000000 INFO @ Tue, 16 Jun 2020 10:00:47: 31000000 INFO @ Tue, 16 Jun 2020 10:00:50: 25000000 INFO @ Tue, 16 Jun 2020 10:00:50: 19000000 INFO @ Tue, 16 Jun 2020 10:00:52: 32000000 INFO @ Tue, 16 Jun 2020 10:00:54: 26000000 INFO @ Tue, 16 Jun 2020 10:00:55: 20000000 INFO @ Tue, 16 Jun 2020 10:00:58: 33000000 INFO @ Tue, 16 Jun 2020 10:00:59: 27000000 INFO @ Tue, 16 Jun 2020 10:01:00: 21000000 INFO @ Tue, 16 Jun 2020 10:01:03: 34000000 INFO @ Tue, 16 Jun 2020 10:01:04: 28000000 INFO @ Tue, 16 Jun 2020 10:01:04: 22000000 INFO @ Tue, 16 Jun 2020 10:01:07: 35000000 INFO @ Tue, 16 Jun 2020 10:01:09: 29000000 INFO @ Tue, 16 Jun 2020 10:01:09: 23000000 INFO @ Tue, 16 Jun 2020 10:01:12: 36000000 INFO @ Tue, 16 Jun 2020 10:01:14: 30000000 INFO @ Tue, 16 Jun 2020 10:01:14: 24000000 INFO @ Tue, 16 Jun 2020 10:01:17: 37000000 INFO @ Tue, 16 Jun 2020 10:01:19: 31000000 INFO @ Tue, 16 Jun 2020 10:01:19: 25000000 INFO @ Tue, 16 Jun 2020 10:01:22: 38000000 INFO @ Tue, 16 Jun 2020 10:01:24: 32000000 INFO @ Tue, 16 Jun 2020 10:01:24: 26000000 INFO @ Tue, 16 Jun 2020 10:01:26: 39000000 INFO @ Tue, 16 Jun 2020 10:01:28: 33000000 INFO @ Tue, 16 Jun 2020 10:01:28: 27000000 INFO @ Tue, 16 Jun 2020 10:01:31: 40000000 INFO @ Tue, 16 Jun 2020 10:01:33: 34000000 INFO @ Tue, 16 Jun 2020 10:01:33: 28000000 INFO @ Tue, 16 Jun 2020 10:01:36: 41000000 INFO @ Tue, 16 Jun 2020 10:01:38: 35000000 INFO @ Tue, 16 Jun 2020 10:01:38: 29000000 INFO @ Tue, 16 Jun 2020 10:01:41: 42000000 INFO @ Tue, 16 Jun 2020 10:01:43: 36000000 INFO @ Tue, 16 Jun 2020 10:01:43: 30000000 INFO @ Tue, 16 Jun 2020 10:01:46: 43000000 INFO @ Tue, 16 Jun 2020 10:01:48: 37000000 INFO @ Tue, 16 Jun 2020 10:01:48: 31000000 INFO @ Tue, 16 Jun 2020 10:01:50: 44000000 INFO @ Tue, 16 Jun 2020 10:01:53: 38000000 INFO @ Tue, 16 Jun 2020 10:01:53: 32000000 INFO @ Tue, 16 Jun 2020 10:01:55: 45000000 INFO @ Tue, 16 Jun 2020 10:01:57: 39000000 INFO @ Tue, 16 Jun 2020 10:01:58: 33000000 INFO @ Tue, 16 Jun 2020 10:02:00: 46000000 INFO @ Tue, 16 Jun 2020 10:02:02: 40000000 INFO @ Tue, 16 Jun 2020 10:02:02: 34000000 INFO @ Tue, 16 Jun 2020 10:02:05: 47000000 INFO @ Tue, 16 Jun 2020 10:02:07: 41000000 INFO @ Tue, 16 Jun 2020 10:02:07: 35000000 INFO @ Tue, 16 Jun 2020 10:02:10: 48000000 INFO @ Tue, 16 Jun 2020 10:02:12: 42000000 INFO @ Tue, 16 Jun 2020 10:02:12: 36000000 INFO @ Tue, 16 Jun 2020 10:02:15: 49000000 INFO @ Tue, 16 Jun 2020 10:02:16: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 10:02:16: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 10:02:16: #1 total tags in treatment: 23858747 INFO @ Tue, 16 Jun 2020 10:02:16: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:02:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:02:17: #1 tags after filtering in treatment: 21281414 INFO @ Tue, 16 Jun 2020 10:02:17: #1 Redundant rate of treatment: 0.11 INFO @ Tue, 16 Jun 2020 10:02:17: #1 finished! INFO @ Tue, 16 Jun 2020 10:02:17: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:02:17: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:02:17: 37000000 INFO @ Tue, 16 Jun 2020 10:02:17: 43000000 INFO @ Tue, 16 Jun 2020 10:02:18: #2 number of paired peaks: 234 WARNING @ Tue, 16 Jun 2020 10:02:18: Fewer paired peaks (234) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 234 pairs to build model! INFO @ Tue, 16 Jun 2020 10:02:18: start model_add_line... INFO @ Tue, 16 Jun 2020 10:02:18: start X-correlation... INFO @ Tue, 16 Jun 2020 10:02:18: end of X-cor INFO @ Tue, 16 Jun 2020 10:02:18: #2 finished! INFO @ Tue, 16 Jun 2020 10:02:18: #2 predicted fragment length is 66 bps INFO @ Tue, 16 Jun 2020 10:02:18: #2 alternative fragment length(s) may be 3,66,93,123 bps INFO @ Tue, 16 Jun 2020 10:02:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.05_model.r WARNING @ Tue, 16 Jun 2020 10:02:18: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 10:02:18: #2 You may need to consider one of the other alternative d(s): 3,66,93,123 WARNING @ Tue, 16 Jun 2020 10:02:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 10:02:18: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:02:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:02:22: 38000000 INFO @ Tue, 16 Jun 2020 10:02:22: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 10:02:26: 39000000 INFO @ Tue, 16 Jun 2020 10:02:27: 45000000 INFO @ Tue, 16 Jun 2020 10:02:31: 40000000 INFO @ Tue, 16 Jun 2020 10:02:31: 46000000 INFO @ Tue, 16 Jun 2020 10:02:36: 41000000 INFO @ Tue, 16 Jun 2020 10:02:36: 47000000 INFO @ Tue, 16 Jun 2020 10:02:41: 42000000 INFO @ Tue, 16 Jun 2020 10:02:41: 48000000 INFO @ Tue, 16 Jun 2020 10:02:46: 43000000 INFO @ Tue, 16 Jun 2020 10:02:46: 49000000 INFO @ Tue, 16 Jun 2020 10:02:47: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 10:02:47: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 10:02:47: #1 total tags in treatment: 23858747 INFO @ Tue, 16 Jun 2020 10:02:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:02:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:02:48: #1 tags after filtering in treatment: 21281414 INFO @ Tue, 16 Jun 2020 10:02:48: #1 Redundant rate of treatment: 0.11 INFO @ Tue, 16 Jun 2020 10:02:48: #1 finished! INFO @ Tue, 16 Jun 2020 10:02:48: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:02:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:02:49: #2 number of paired peaks: 234 WARNING @ Tue, 16 Jun 2020 10:02:49: Fewer paired peaks (234) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 234 pairs to build model! INFO @ Tue, 16 Jun 2020 10:02:49: start model_add_line... INFO @ Tue, 16 Jun 2020 10:02:49: start X-correlation... INFO @ Tue, 16 Jun 2020 10:02:49: end of X-cor INFO @ Tue, 16 Jun 2020 10:02:49: #2 finished! INFO @ Tue, 16 Jun 2020 10:02:49: #2 predicted fragment length is 66 bps INFO @ Tue, 16 Jun 2020 10:02:49: #2 alternative fragment length(s) may be 3,66,93,123 bps INFO @ Tue, 16 Jun 2020 10:02:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.10_model.r WARNING @ Tue, 16 Jun 2020 10:02:49: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 10:02:49: #2 You may need to consider one of the other alternative d(s): 3,66,93,123 WARNING @ Tue, 16 Jun 2020 10:02:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 10:02:49: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:02:49: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:02:50: 44000000 INFO @ Tue, 16 Jun 2020 10:02:54: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:02:55: 45000000 INFO @ Tue, 16 Jun 2020 10:03:00: 46000000 INFO @ Tue, 16 Jun 2020 10:03:04: 47000000 INFO @ Tue, 16 Jun 2020 10:03:09: 48000000 INFO @ Tue, 16 Jun 2020 10:03:10: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.05_peaks.xls INFO @ Tue, 16 Jun 2020 10:03:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:03:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.05_summits.bed INFO @ Tue, 16 Jun 2020 10:03:10: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (597 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:03:13: 49000000 INFO @ Tue, 16 Jun 2020 10:03:15: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 10:03:15: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 10:03:15: #1 total tags in treatment: 23858747 INFO @ Tue, 16 Jun 2020 10:03:15: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:03:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:03:15: #1 tags after filtering in treatment: 21281414 INFO @ Tue, 16 Jun 2020 10:03:15: #1 Redundant rate of treatment: 0.11 INFO @ Tue, 16 Jun 2020 10:03:15: #1 finished! INFO @ Tue, 16 Jun 2020 10:03:15: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:03:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:03:17: #2 number of paired peaks: 234 WARNING @ Tue, 16 Jun 2020 10:03:17: Fewer paired peaks (234) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 234 pairs to build model! INFO @ Tue, 16 Jun 2020 10:03:17: start model_add_line... INFO @ Tue, 16 Jun 2020 10:03:17: start X-correlation... INFO @ Tue, 16 Jun 2020 10:03:17: end of X-cor INFO @ Tue, 16 Jun 2020 10:03:17: #2 finished! INFO @ Tue, 16 Jun 2020 10:03:17: #2 predicted fragment length is 66 bps INFO @ Tue, 16 Jun 2020 10:03:17: #2 alternative fragment length(s) may be 3,66,93,123 bps INFO @ Tue, 16 Jun 2020 10:03:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.20_model.r WARNING @ Tue, 16 Jun 2020 10:03:17: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 10:03:17: #2 You may need to consider one of the other alternative d(s): 3,66,93,123 WARNING @ Tue, 16 Jun 2020 10:03:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 10:03:17: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:03:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:03:24: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:03:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.10_peaks.xls INFO @ Tue, 16 Jun 2020 10:03:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:03:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.10_summits.bed INFO @ Tue, 16 Jun 2020 10:03:40: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (430 records, 4 fields): 1 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 10:03:51: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:04:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.20_peaks.xls INFO @ Tue, 16 Jun 2020 10:04:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:04:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4996813/SRX4996813.20_summits.bed INFO @ Tue, 16 Jun 2020 10:04:07: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (193 records, 4 fields): 1 millis CompletedMACS2peakCalling