Job ID = 6367959 SRX = SRX4419827 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:42:48 prefetch.2.10.7: 1) Downloading 'SRR7553964'... 2020-06-15T23:42:48 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:47:42 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:47:42 prefetch.2.10.7: 1) 'SRR7553964' was downloaded successfully Read 16573811 spots for SRR7553964/SRR7553964.sra Written 16573811 spots for SRR7553964/SRR7553964.sra 2020-06-15T23:49:19 prefetch.2.10.7: 1) Downloading 'SRR7553965'... 2020-06-15T23:49:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:51:45 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:51:45 prefetch.2.10.7: 1) 'SRR7553965' was downloaded successfully Read 13250175 spots for SRR7553965/SRR7553965.sra Written 13250175 spots for SRR7553965/SRR7553965.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:24:47 29823986 reads; of these: 29823986 (100.00%) were paired; of these: 3182322 (10.67%) aligned concordantly 0 times 22568677 (75.67%) aligned concordantly exactly 1 time 4072987 (13.66%) aligned concordantly >1 times ---- 3182322 pairs aligned concordantly 0 times; of these: 1062878 (33.40%) aligned discordantly 1 time ---- 2119444 pairs aligned 0 times concordantly or discordantly; of these: 4238888 mates make up the pairs; of these: 2517360 (59.39%) aligned 0 times 1104599 (26.06%) aligned exactly 1 time 616929 (14.55%) aligned >1 times 95.78% overall alignment rate Time searching: 00:24:47 Overall time: 00:24:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 1067593 / 27086317 = 0.0394 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:32:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:32:45: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:32:45: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:32:50: 1000000 INFO @ Tue, 16 Jun 2020 09:32:54: 2000000 INFO @ Tue, 16 Jun 2020 09:32:59: 3000000 INFO @ Tue, 16 Jun 2020 09:33:03: 4000000 INFO @ Tue, 16 Jun 2020 09:33:08: 5000000 INFO @ Tue, 16 Jun 2020 09:33:12: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:33:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:33:15: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:33:15: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:33:16: 7000000 INFO @ Tue, 16 Jun 2020 09:33:20: 1000000 INFO @ Tue, 16 Jun 2020 09:33:21: 8000000 INFO @ Tue, 16 Jun 2020 09:33:25: 2000000 INFO @ Tue, 16 Jun 2020 09:33:25: 9000000 INFO @ Tue, 16 Jun 2020 09:33:30: 10000000 INFO @ Tue, 16 Jun 2020 09:33:30: 3000000 INFO @ Tue, 16 Jun 2020 09:33:34: 11000000 INFO @ Tue, 16 Jun 2020 09:33:35: 4000000 INFO @ Tue, 16 Jun 2020 09:33:39: 12000000 INFO @ Tue, 16 Jun 2020 09:33:41: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:33:44: 13000000 INFO @ Tue, 16 Jun 2020 09:33:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:33:45: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:33:45: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:33:46: 6000000 INFO @ Tue, 16 Jun 2020 09:33:48: 14000000 INFO @ Tue, 16 Jun 2020 09:33:50: 1000000 INFO @ Tue, 16 Jun 2020 09:33:51: 7000000 INFO @ Tue, 16 Jun 2020 09:33:53: 15000000 INFO @ Tue, 16 Jun 2020 09:33:55: 2000000 INFO @ Tue, 16 Jun 2020 09:33:57: 8000000 INFO @ Tue, 16 Jun 2020 09:33:57: 16000000 INFO @ Tue, 16 Jun 2020 09:34:01: 3000000 INFO @ Tue, 16 Jun 2020 09:34:02: 9000000 INFO @ Tue, 16 Jun 2020 09:34:02: 17000000 INFO @ Tue, 16 Jun 2020 09:34:06: 4000000 INFO @ Tue, 16 Jun 2020 09:34:07: 18000000 INFO @ Tue, 16 Jun 2020 09:34:07: 10000000 INFO @ Tue, 16 Jun 2020 09:34:11: 19000000 INFO @ Tue, 16 Jun 2020 09:34:11: 5000000 INFO @ Tue, 16 Jun 2020 09:34:13: 11000000 INFO @ Tue, 16 Jun 2020 09:34:16: 20000000 INFO @ Tue, 16 Jun 2020 09:34:17: 6000000 INFO @ Tue, 16 Jun 2020 09:34:18: 12000000 INFO @ Tue, 16 Jun 2020 09:34:20: 21000000 INFO @ Tue, 16 Jun 2020 09:34:22: 7000000 INFO @ Tue, 16 Jun 2020 09:34:24: 13000000 INFO @ Tue, 16 Jun 2020 09:34:25: 22000000 INFO @ Tue, 16 Jun 2020 09:34:28: 8000000 INFO @ Tue, 16 Jun 2020 09:34:29: 14000000 INFO @ Tue, 16 Jun 2020 09:34:30: 23000000 INFO @ Tue, 16 Jun 2020 09:34:33: 9000000 INFO @ Tue, 16 Jun 2020 09:34:34: 24000000 INFO @ Tue, 16 Jun 2020 09:34:35: 15000000 INFO @ Tue, 16 Jun 2020 09:34:39: 10000000 INFO @ Tue, 16 Jun 2020 09:34:39: 25000000 INFO @ Tue, 16 Jun 2020 09:34:40: 16000000 INFO @ Tue, 16 Jun 2020 09:34:44: 26000000 INFO @ Tue, 16 Jun 2020 09:34:44: 11000000 INFO @ Tue, 16 Jun 2020 09:34:46: 17000000 INFO @ Tue, 16 Jun 2020 09:34:49: 27000000 INFO @ Tue, 16 Jun 2020 09:34:50: 12000000 INFO @ Tue, 16 Jun 2020 09:34:51: 18000000 INFO @ Tue, 16 Jun 2020 09:34:53: 28000000 INFO @ Tue, 16 Jun 2020 09:34:55: 13000000 INFO @ Tue, 16 Jun 2020 09:34:57: 19000000 INFO @ Tue, 16 Jun 2020 09:34:58: 29000000 INFO @ Tue, 16 Jun 2020 09:35:01: 14000000 INFO @ Tue, 16 Jun 2020 09:35:02: 20000000 INFO @ Tue, 16 Jun 2020 09:35:03: 30000000 INFO @ Tue, 16 Jun 2020 09:35:06: 15000000 INFO @ Tue, 16 Jun 2020 09:35:07: 31000000 INFO @ Tue, 16 Jun 2020 09:35:08: 21000000 INFO @ Tue, 16 Jun 2020 09:35:12: 16000000 INFO @ Tue, 16 Jun 2020 09:35:12: 32000000 INFO @ Tue, 16 Jun 2020 09:35:13: 22000000 INFO @ Tue, 16 Jun 2020 09:35:17: 33000000 INFO @ Tue, 16 Jun 2020 09:35:17: 17000000 INFO @ Tue, 16 Jun 2020 09:35:19: 23000000 INFO @ Tue, 16 Jun 2020 09:35:21: 34000000 INFO @ Tue, 16 Jun 2020 09:35:23: 18000000 INFO @ Tue, 16 Jun 2020 09:35:24: 24000000 INFO @ Tue, 16 Jun 2020 09:35:26: 35000000 INFO @ Tue, 16 Jun 2020 09:35:28: 19000000 INFO @ Tue, 16 Jun 2020 09:35:29: 25000000 INFO @ Tue, 16 Jun 2020 09:35:30: 36000000 INFO @ Tue, 16 Jun 2020 09:35:33: 20000000 INFO @ Tue, 16 Jun 2020 09:35:35: 37000000 INFO @ Tue, 16 Jun 2020 09:35:35: 26000000 INFO @ Tue, 16 Jun 2020 09:35:38: 21000000 INFO @ Tue, 16 Jun 2020 09:35:39: 38000000 INFO @ Tue, 16 Jun 2020 09:35:40: 27000000 INFO @ Tue, 16 Jun 2020 09:35:44: 22000000 INFO @ Tue, 16 Jun 2020 09:35:44: 39000000 INFO @ Tue, 16 Jun 2020 09:35:46: 28000000 INFO @ Tue, 16 Jun 2020 09:35:49: 40000000 INFO @ Tue, 16 Jun 2020 09:35:49: 23000000 INFO @ Tue, 16 Jun 2020 09:35:51: 29000000 INFO @ Tue, 16 Jun 2020 09:35:53: 41000000 INFO @ Tue, 16 Jun 2020 09:35:55: 24000000 INFO @ Tue, 16 Jun 2020 09:35:56: 30000000 INFO @ Tue, 16 Jun 2020 09:35:58: 42000000 INFO @ Tue, 16 Jun 2020 09:36:00: 25000000 INFO @ Tue, 16 Jun 2020 09:36:02: 31000000 INFO @ Tue, 16 Jun 2020 09:36:03: 43000000 INFO @ Tue, 16 Jun 2020 09:36:05: 26000000 INFO @ Tue, 16 Jun 2020 09:36:07: 32000000 INFO @ Tue, 16 Jun 2020 09:36:07: 44000000 INFO @ Tue, 16 Jun 2020 09:36:11: 27000000 INFO @ Tue, 16 Jun 2020 09:36:12: 45000000 INFO @ Tue, 16 Jun 2020 09:36:12: 33000000 INFO @ Tue, 16 Jun 2020 09:36:16: 28000000 INFO @ Tue, 16 Jun 2020 09:36:17: 46000000 INFO @ Tue, 16 Jun 2020 09:36:18: 34000000 INFO @ Tue, 16 Jun 2020 09:36:21: 47000000 INFO @ Tue, 16 Jun 2020 09:36:21: 29000000 INFO @ Tue, 16 Jun 2020 09:36:23: 35000000 INFO @ Tue, 16 Jun 2020 09:36:26: 48000000 INFO @ Tue, 16 Jun 2020 09:36:27: 30000000 INFO @ Tue, 16 Jun 2020 09:36:28: 36000000 INFO @ Tue, 16 Jun 2020 09:36:31: 49000000 INFO @ Tue, 16 Jun 2020 09:36:32: 31000000 INFO @ Tue, 16 Jun 2020 09:36:34: 37000000 INFO @ Tue, 16 Jun 2020 09:36:35: 50000000 INFO @ Tue, 16 Jun 2020 09:36:37: 32000000 INFO @ Tue, 16 Jun 2020 09:36:39: 38000000 INFO @ Tue, 16 Jun 2020 09:36:40: 51000000 INFO @ Tue, 16 Jun 2020 09:36:43: 33000000 INFO @ Tue, 16 Jun 2020 09:36:44: 39000000 INFO @ Tue, 16 Jun 2020 09:36:44: 52000000 INFO @ Tue, 16 Jun 2020 09:36:48: 34000000 INFO @ Tue, 16 Jun 2020 09:36:49: 53000000 INFO @ Tue, 16 Jun 2020 09:36:49: 40000000 INFO @ Tue, 16 Jun 2020 09:36:53: 35000000 INFO @ Tue, 16 Jun 2020 09:36:54: 54000000 INFO @ Tue, 16 Jun 2020 09:36:55: 41000000 INFO @ Tue, 16 Jun 2020 09:36:58: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:36:58: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:36:58: #1 total tags in treatment: 25579952 INFO @ Tue, 16 Jun 2020 09:36:58: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:36:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:36:59: 36000000 INFO @ Tue, 16 Jun 2020 09:36:59: #1 tags after filtering in treatment: 19557388 INFO @ Tue, 16 Jun 2020 09:36:59: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 09:36:59: #1 finished! INFO @ Tue, 16 Jun 2020 09:36:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:36:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:37:00: 42000000 INFO @ Tue, 16 Jun 2020 09:37:00: #2 number of paired peaks: 109 WARNING @ Tue, 16 Jun 2020 09:37:00: Fewer paired peaks (109) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 109 pairs to build model! INFO @ Tue, 16 Jun 2020 09:37:00: start model_add_line... INFO @ Tue, 16 Jun 2020 09:37:00: start X-correlation... INFO @ Tue, 16 Jun 2020 09:37:00: end of X-cor INFO @ Tue, 16 Jun 2020 09:37:00: #2 finished! INFO @ Tue, 16 Jun 2020 09:37:00: #2 predicted fragment length is 117 bps INFO @ Tue, 16 Jun 2020 09:37:00: #2 alternative fragment length(s) may be 2,64,105,117 bps INFO @ Tue, 16 Jun 2020 09:37:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.05_model.r INFO @ Tue, 16 Jun 2020 09:37:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:37:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:37:04: 37000000 INFO @ Tue, 16 Jun 2020 09:37:05: 43000000 INFO @ Tue, 16 Jun 2020 09:37:09: 38000000 INFO @ Tue, 16 Jun 2020 09:37:10: 44000000 INFO @ Tue, 16 Jun 2020 09:37:14: 39000000 INFO @ Tue, 16 Jun 2020 09:37:16: 45000000 INFO @ Tue, 16 Jun 2020 09:37:20: 40000000 INFO @ Tue, 16 Jun 2020 09:37:21: 46000000 INFO @ Tue, 16 Jun 2020 09:37:25: 41000000 INFO @ Tue, 16 Jun 2020 09:37:26: 47000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 09:37:30: 42000000 INFO @ Tue, 16 Jun 2020 09:37:31: 48000000 INFO @ Tue, 16 Jun 2020 09:37:33: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:37:35: 43000000 INFO @ Tue, 16 Jun 2020 09:37:36: 49000000 INFO @ Tue, 16 Jun 2020 09:37:40: 44000000 INFO @ Tue, 16 Jun 2020 09:37:42: 50000000 INFO @ Tue, 16 Jun 2020 09:37:46: 45000000 INFO @ Tue, 16 Jun 2020 09:37:47: 51000000 INFO @ Tue, 16 Jun 2020 09:37:49: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.05_peaks.xls INFO @ Tue, 16 Jun 2020 09:37:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:37:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.05_summits.bed INFO @ Tue, 16 Jun 2020 09:37:49: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (400 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:37:51: 46000000 INFO @ Tue, 16 Jun 2020 09:37:52: 52000000 INFO @ Tue, 16 Jun 2020 09:37:56: 47000000 INFO @ Tue, 16 Jun 2020 09:37:57: 53000000 INFO @ Tue, 16 Jun 2020 09:38:01: 48000000 INFO @ Tue, 16 Jun 2020 09:38:02: 54000000 INFO @ Tue, 16 Jun 2020 09:38:06: 49000000 INFO @ Tue, 16 Jun 2020 09:38:08: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:38:08: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:38:08: #1 total tags in treatment: 25579952 INFO @ Tue, 16 Jun 2020 09:38:08: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:38:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:38:08: #1 tags after filtering in treatment: 19557388 INFO @ Tue, 16 Jun 2020 09:38:08: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 09:38:08: #1 finished! INFO @ Tue, 16 Jun 2020 09:38:08: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:38:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:38:09: #2 number of paired peaks: 109 WARNING @ Tue, 16 Jun 2020 09:38:09: Fewer paired peaks (109) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 109 pairs to build model! INFO @ Tue, 16 Jun 2020 09:38:09: start model_add_line... INFO @ Tue, 16 Jun 2020 09:38:09: start X-correlation... INFO @ Tue, 16 Jun 2020 09:38:09: end of X-cor INFO @ Tue, 16 Jun 2020 09:38:09: #2 finished! INFO @ Tue, 16 Jun 2020 09:38:09: #2 predicted fragment length is 117 bps INFO @ Tue, 16 Jun 2020 09:38:09: #2 alternative fragment length(s) may be 2,64,105,117 bps INFO @ Tue, 16 Jun 2020 09:38:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.10_model.r INFO @ Tue, 16 Jun 2020 09:38:09: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:38:09: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:38:11: 50000000 INFO @ Tue, 16 Jun 2020 09:38:16: 51000000 INFO @ Tue, 16 Jun 2020 09:38:21: 52000000 INFO @ Tue, 16 Jun 2020 09:38:26: 53000000 INFO @ Tue, 16 Jun 2020 09:38:31: 54000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 09:38:37: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:38:37: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:38:37: #1 total tags in treatment: 25579952 INFO @ Tue, 16 Jun 2020 09:38:37: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:38:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:38:37: #1 tags after filtering in treatment: 19557388 INFO @ Tue, 16 Jun 2020 09:38:37: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 09:38:37: #1 finished! INFO @ Tue, 16 Jun 2020 09:38:37: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:38:37: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:38:38: #2 number of paired peaks: 109 WARNING @ Tue, 16 Jun 2020 09:38:38: Fewer paired peaks (109) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 109 pairs to build model! INFO @ Tue, 16 Jun 2020 09:38:38: start model_add_line... INFO @ Tue, 16 Jun 2020 09:38:39: start X-correlation... INFO @ Tue, 16 Jun 2020 09:38:39: end of X-cor INFO @ Tue, 16 Jun 2020 09:38:39: #2 finished! INFO @ Tue, 16 Jun 2020 09:38:39: #2 predicted fragment length is 117 bps INFO @ Tue, 16 Jun 2020 09:38:39: #2 alternative fragment length(s) may be 2,64,105,117 bps INFO @ Tue, 16 Jun 2020 09:38:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.20_model.r INFO @ Tue, 16 Jun 2020 09:38:39: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:38:39: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:38:42: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:38:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.10_peaks.xls INFO @ Tue, 16 Jun 2020 09:38:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:38:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.10_summits.bed INFO @ Tue, 16 Jun 2020 09:38:59: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (206 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:39:10: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:39:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.20_peaks.xls INFO @ Tue, 16 Jun 2020 09:39:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:39:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4419827/SRX4419827.20_summits.bed INFO @ Tue, 16 Jun 2020 09:39:26: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (124 records, 4 fields): 1 millis CompletedMACS2peakCalling