Job ID = 6367954 SRX = SRX4419820 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:44:02 prefetch.2.10.7: 1) Downloading 'SRR7553946'... 2020-06-15T23:44:02 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:48:59 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:49:00 prefetch.2.10.7: 'SRR7553946' is valid 2020-06-15T23:49:00 prefetch.2.10.7: 1) 'SRR7553946' was downloaded successfully Read 12405203 spots for SRR7553946/SRR7553946.sra Written 12405203 spots for SRR7553946/SRR7553946.sra 2020-06-15T23:50:14 prefetch.2.10.7: 1) Downloading 'SRR7553947'... 2020-06-15T23:50:14 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:52:11 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:52:13 prefetch.2.10.7: 'SRR7553947' is valid 2020-06-15T23:52:13 prefetch.2.10.7: 1) 'SRR7553947' was downloaded successfully Read 12280355 spots for SRR7553947/SRR7553947.sra Written 12280355 spots for SRR7553947/SRR7553947.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:19:56 24685558 reads; of these: 24685558 (100.00%) were paired; of these: 3861269 (15.64%) aligned concordantly 0 times 17780353 (72.03%) aligned concordantly exactly 1 time 3043936 (12.33%) aligned concordantly >1 times ---- 3861269 pairs aligned concordantly 0 times; of these: 1084090 (28.08%) aligned discordantly 1 time ---- 2777179 pairs aligned 0 times concordantly or discordantly; of these: 5554358 mates make up the pairs; of these: 4446817 (80.06%) aligned 0 times 662909 (11.93%) aligned exactly 1 time 444632 (8.01%) aligned >1 times 90.99% overall alignment rate Time searching: 00:19:56 Overall time: 00:19:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 558772 / 21789227 = 0.0256 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:24:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:24:01: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:24:01: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:24:07: 1000000 INFO @ Tue, 16 Jun 2020 09:24:13: 2000000 INFO @ Tue, 16 Jun 2020 09:24:19: 3000000 INFO @ Tue, 16 Jun 2020 09:24:24: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:24:30: 5000000 INFO @ Tue, 16 Jun 2020 09:24:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:24:31: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:24:31: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:24:36: 6000000 INFO @ Tue, 16 Jun 2020 09:24:38: 1000000 INFO @ Tue, 16 Jun 2020 09:24:43: 7000000 INFO @ Tue, 16 Jun 2020 09:24:44: 2000000 INFO @ Tue, 16 Jun 2020 09:24:50: 8000000 INFO @ Tue, 16 Jun 2020 09:24:51: 3000000 INFO @ Tue, 16 Jun 2020 09:24:57: 9000000 INFO @ Tue, 16 Jun 2020 09:24:57: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 09:25:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 09:25:01: #1 read tag files... INFO @ Tue, 16 Jun 2020 09:25:01: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 09:25:03: 10000000 INFO @ Tue, 16 Jun 2020 09:25:04: 5000000 INFO @ Tue, 16 Jun 2020 09:25:08: 1000000 INFO @ Tue, 16 Jun 2020 09:25:10: 11000000 INFO @ Tue, 16 Jun 2020 09:25:11: 6000000 INFO @ Tue, 16 Jun 2020 09:25:15: 2000000 INFO @ Tue, 16 Jun 2020 09:25:17: 12000000 INFO @ Tue, 16 Jun 2020 09:25:17: 7000000 INFO @ Tue, 16 Jun 2020 09:25:21: 3000000 INFO @ Tue, 16 Jun 2020 09:25:23: 13000000 INFO @ Tue, 16 Jun 2020 09:25:24: 8000000 INFO @ Tue, 16 Jun 2020 09:25:28: 4000000 INFO @ Tue, 16 Jun 2020 09:25:30: 14000000 INFO @ Tue, 16 Jun 2020 09:25:31: 9000000 INFO @ Tue, 16 Jun 2020 09:25:35: 5000000 INFO @ Tue, 16 Jun 2020 09:25:37: 15000000 INFO @ Tue, 16 Jun 2020 09:25:37: 10000000 INFO @ Tue, 16 Jun 2020 09:25:42: 6000000 INFO @ Tue, 16 Jun 2020 09:25:43: 16000000 INFO @ Tue, 16 Jun 2020 09:25:44: 11000000 INFO @ Tue, 16 Jun 2020 09:25:48: 7000000 INFO @ Tue, 16 Jun 2020 09:25:50: 17000000 INFO @ Tue, 16 Jun 2020 09:25:51: 12000000 INFO @ Tue, 16 Jun 2020 09:25:55: 8000000 INFO @ Tue, 16 Jun 2020 09:25:57: 18000000 INFO @ Tue, 16 Jun 2020 09:25:57: 13000000 INFO @ Tue, 16 Jun 2020 09:26:02: 9000000 INFO @ Tue, 16 Jun 2020 09:26:04: 19000000 INFO @ Tue, 16 Jun 2020 09:26:04: 14000000 INFO @ Tue, 16 Jun 2020 09:26:09: 10000000 INFO @ Tue, 16 Jun 2020 09:26:10: 20000000 INFO @ Tue, 16 Jun 2020 09:26:11: 15000000 INFO @ Tue, 16 Jun 2020 09:26:15: 11000000 INFO @ Tue, 16 Jun 2020 09:26:17: 21000000 INFO @ Tue, 16 Jun 2020 09:26:18: 16000000 INFO @ Tue, 16 Jun 2020 09:26:22: 12000000 INFO @ Tue, 16 Jun 2020 09:26:24: 22000000 INFO @ Tue, 16 Jun 2020 09:26:25: 17000000 INFO @ Tue, 16 Jun 2020 09:26:29: 13000000 INFO @ Tue, 16 Jun 2020 09:26:31: 23000000 INFO @ Tue, 16 Jun 2020 09:26:32: 18000000 INFO @ Tue, 16 Jun 2020 09:26:36: 14000000 INFO @ Tue, 16 Jun 2020 09:26:38: 24000000 INFO @ Tue, 16 Jun 2020 09:26:38: 19000000 INFO @ Tue, 16 Jun 2020 09:26:43: 15000000 INFO @ Tue, 16 Jun 2020 09:26:44: 25000000 INFO @ Tue, 16 Jun 2020 09:26:45: 20000000 INFO @ Tue, 16 Jun 2020 09:26:49: 16000000 INFO @ Tue, 16 Jun 2020 09:26:51: 26000000 INFO @ Tue, 16 Jun 2020 09:26:52: 21000000 INFO @ Tue, 16 Jun 2020 09:26:56: 17000000 INFO @ Tue, 16 Jun 2020 09:26:58: 27000000 INFO @ Tue, 16 Jun 2020 09:26:59: 22000000 INFO @ Tue, 16 Jun 2020 09:27:03: 18000000 INFO @ Tue, 16 Jun 2020 09:27:05: 28000000 INFO @ Tue, 16 Jun 2020 09:27:05: 23000000 INFO @ Tue, 16 Jun 2020 09:27:10: 19000000 INFO @ Tue, 16 Jun 2020 09:27:11: 29000000 INFO @ Tue, 16 Jun 2020 09:27:12: 24000000 INFO @ Tue, 16 Jun 2020 09:27:17: 20000000 INFO @ Tue, 16 Jun 2020 09:27:18: 30000000 INFO @ Tue, 16 Jun 2020 09:27:19: 25000000 INFO @ Tue, 16 Jun 2020 09:27:23: 21000000 INFO @ Tue, 16 Jun 2020 09:27:25: 31000000 INFO @ Tue, 16 Jun 2020 09:27:25: 26000000 INFO @ Tue, 16 Jun 2020 09:27:30: 22000000 INFO @ Tue, 16 Jun 2020 09:27:32: 32000000 INFO @ Tue, 16 Jun 2020 09:27:32: 27000000 INFO @ Tue, 16 Jun 2020 09:27:37: 23000000 INFO @ Tue, 16 Jun 2020 09:27:39: 33000000 INFO @ Tue, 16 Jun 2020 09:27:39: 28000000 INFO @ Tue, 16 Jun 2020 09:27:44: 24000000 INFO @ Tue, 16 Jun 2020 09:27:45: 34000000 INFO @ Tue, 16 Jun 2020 09:27:45: 29000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 09:27:51: 25000000 INFO @ Tue, 16 Jun 2020 09:27:52: 30000000 INFO @ Tue, 16 Jun 2020 09:27:52: 35000000 INFO @ Tue, 16 Jun 2020 09:27:58: 26000000 INFO @ Tue, 16 Jun 2020 09:27:58: 31000000 INFO @ Tue, 16 Jun 2020 09:27:59: 36000000 INFO @ Tue, 16 Jun 2020 09:28:05: 27000000 INFO @ Tue, 16 Jun 2020 09:28:05: 32000000 INFO @ Tue, 16 Jun 2020 09:28:05: 37000000 INFO @ Tue, 16 Jun 2020 09:28:11: 28000000 INFO @ Tue, 16 Jun 2020 09:28:11: 33000000 INFO @ Tue, 16 Jun 2020 09:28:12: 38000000 INFO @ Tue, 16 Jun 2020 09:28:18: 34000000 INFO @ Tue, 16 Jun 2020 09:28:18: 29000000 INFO @ Tue, 16 Jun 2020 09:28:18: 39000000 INFO @ Tue, 16 Jun 2020 09:28:25: 35000000 INFO @ Tue, 16 Jun 2020 09:28:25: 30000000 INFO @ Tue, 16 Jun 2020 09:28:25: 40000000 INFO @ Tue, 16 Jun 2020 09:28:31: 36000000 INFO @ Tue, 16 Jun 2020 09:28:32: 41000000 INFO @ Tue, 16 Jun 2020 09:28:32: 31000000 INFO @ Tue, 16 Jun 2020 09:28:38: 37000000 INFO @ Tue, 16 Jun 2020 09:28:38: 42000000 INFO @ Tue, 16 Jun 2020 09:28:38: 32000000 INFO @ Tue, 16 Jun 2020 09:28:44: 38000000 INFO @ Tue, 16 Jun 2020 09:28:45: 43000000 INFO @ Tue, 16 Jun 2020 09:28:45: 33000000 INFO @ Tue, 16 Jun 2020 09:28:50: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:28:50: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:28:50: #1 total tags in treatment: 20271471 INFO @ Tue, 16 Jun 2020 09:28:50: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:28:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:28:50: #1 tags after filtering in treatment: 16405089 INFO @ Tue, 16 Jun 2020 09:28:50: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 09:28:50: #1 finished! INFO @ Tue, 16 Jun 2020 09:28:50: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:28:50: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:28:51: 39000000 INFO @ Tue, 16 Jun 2020 09:28:52: #2 number of paired peaks: 164 WARNING @ Tue, 16 Jun 2020 09:28:52: Fewer paired peaks (164) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 164 pairs to build model! INFO @ Tue, 16 Jun 2020 09:28:52: start model_add_line... INFO @ Tue, 16 Jun 2020 09:28:52: 34000000 INFO @ Tue, 16 Jun 2020 09:28:52: start X-correlation... INFO @ Tue, 16 Jun 2020 09:28:52: end of X-cor INFO @ Tue, 16 Jun 2020 09:28:52: #2 finished! INFO @ Tue, 16 Jun 2020 09:28:52: #2 predicted fragment length is 70 bps INFO @ Tue, 16 Jun 2020 09:28:52: #2 alternative fragment length(s) may be 3,55,70,104,126,149,201 bps INFO @ Tue, 16 Jun 2020 09:28:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.05_model.r WARNING @ Tue, 16 Jun 2020 09:28:52: #2 Since the d (70) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:28:52: #2 You may need to consider one of the other alternative d(s): 3,55,70,104,126,149,201 WARNING @ Tue, 16 Jun 2020 09:28:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:28:52: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:28:52: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 09:28:57: 40000000 INFO @ Tue, 16 Jun 2020 09:28:58: 35000000 INFO @ Tue, 16 Jun 2020 09:29:04: 41000000 INFO @ Tue, 16 Jun 2020 09:29:05: 36000000 INFO @ Tue, 16 Jun 2020 09:29:11: 42000000 INFO @ Tue, 16 Jun 2020 09:29:11: 37000000 INFO @ Tue, 16 Jun 2020 09:29:17: 43000000 INFO @ Tue, 16 Jun 2020 09:29:18: 38000000 INFO @ Tue, 16 Jun 2020 09:29:23: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:29:23: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:29:23: #1 total tags in treatment: 20271471 INFO @ Tue, 16 Jun 2020 09:29:23: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:29:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:29:23: #1 tags after filtering in treatment: 16405089 INFO @ Tue, 16 Jun 2020 09:29:23: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 09:29:23: #1 finished! INFO @ Tue, 16 Jun 2020 09:29:23: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:29:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:29:24: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:29:24: #2 number of paired peaks: 164 WARNING @ Tue, 16 Jun 2020 09:29:24: Fewer paired peaks (164) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 164 pairs to build model! INFO @ Tue, 16 Jun 2020 09:29:24: start model_add_line... INFO @ Tue, 16 Jun 2020 09:29:24: start X-correlation... INFO @ Tue, 16 Jun 2020 09:29:24: end of X-cor INFO @ Tue, 16 Jun 2020 09:29:24: #2 finished! INFO @ Tue, 16 Jun 2020 09:29:24: #2 predicted fragment length is 70 bps INFO @ Tue, 16 Jun 2020 09:29:24: #2 alternative fragment length(s) may be 3,55,70,104,126,149,201 bps INFO @ Tue, 16 Jun 2020 09:29:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.10_model.r WARNING @ Tue, 16 Jun 2020 09:29:24: #2 Since the d (70) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:29:24: #2 You may need to consider one of the other alternative d(s): 3,55,70,104,126,149,201 WARNING @ Tue, 16 Jun 2020 09:29:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:29:24: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:29:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:29:24: 39000000 INFO @ Tue, 16 Jun 2020 09:29:30: 40000000 INFO @ Tue, 16 Jun 2020 09:29:36: 41000000 INFO @ Tue, 16 Jun 2020 09:29:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.05_peaks.xls INFO @ Tue, 16 Jun 2020 09:29:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:29:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.05_summits.bed INFO @ Tue, 16 Jun 2020 09:29:40: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (523 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:29:42: 42000000 INFO @ Tue, 16 Jun 2020 09:29:48: 43000000 INFO @ Tue, 16 Jun 2020 09:29:52: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 09:29:52: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 09:29:52: #1 total tags in treatment: 20271471 INFO @ Tue, 16 Jun 2020 09:29:52: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 09:29:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 09:29:53: #1 tags after filtering in treatment: 16405089 INFO @ Tue, 16 Jun 2020 09:29:53: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 09:29:53: #1 finished! INFO @ Tue, 16 Jun 2020 09:29:53: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 09:29:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 09:29:54: #2 number of paired peaks: 164 WARNING @ Tue, 16 Jun 2020 09:29:54: Fewer paired peaks (164) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 164 pairs to build model! INFO @ Tue, 16 Jun 2020 09:29:54: start model_add_line... INFO @ Tue, 16 Jun 2020 09:29:54: start X-correlation... INFO @ Tue, 16 Jun 2020 09:29:54: end of X-cor INFO @ Tue, 16 Jun 2020 09:29:54: #2 finished! INFO @ Tue, 16 Jun 2020 09:29:54: #2 predicted fragment length is 70 bps INFO @ Tue, 16 Jun 2020 09:29:54: #2 alternative fragment length(s) may be 3,55,70,104,126,149,201 bps INFO @ Tue, 16 Jun 2020 09:29:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.20_model.r WARNING @ Tue, 16 Jun 2020 09:29:54: #2 Since the d (70) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:29:54: #2 You may need to consider one of the other alternative d(s): 3,55,70,104,126,149,201 WARNING @ Tue, 16 Jun 2020 09:29:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:29:54: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:29:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:29:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:30:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.10_peaks.xls INFO @ Tue, 16 Jun 2020 09:30:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:30:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.10_summits.bed INFO @ Tue, 16 Jun 2020 09:30:11: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (244 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:30:24: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:30:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.20_peaks.xls INFO @ Tue, 16 Jun 2020 09:30:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:30:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4419820/SRX4419820.20_summits.bed INFO @ Tue, 16 Jun 2020 09:30:40: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (110 records, 4 fields): 1 millis CompletedMACS2peakCalling