Job ID = 6507790 SRX = SRX4085367 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-26T13:56:12 prefetch.2.10.7: 1) Downloading 'SRR7167396'... 2020-06-26T13:56:12 prefetch.2.10.7: Downloading via HTTPS... 2020-06-26T14:03:06 prefetch.2.10.7: HTTPS download succeed 2020-06-26T14:03:06 prefetch.2.10.7: 1) 'SRR7167396' was downloaded successfully Read 30806701 spots for SRR7167396/SRR7167396.sra Written 30806701 spots for SRR7167396/SRR7167396.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:23:23 30806701 reads; of these: 30806701 (100.00%) were paired; of these: 7116170 (23.10%) aligned concordantly 0 times 20364928 (66.11%) aligned concordantly exactly 1 time 3325603 (10.80%) aligned concordantly >1 times ---- 7116170 pairs aligned concordantly 0 times; of these: 283026 (3.98%) aligned discordantly 1 time ---- 6833144 pairs aligned 0 times concordantly or discordantly; of these: 13666288 mates make up the pairs; of these: 11292216 (82.63%) aligned 0 times 2034871 (14.89%) aligned exactly 1 time 339201 (2.48%) aligned >1 times 81.67% overall alignment rate Time searching: 00:23:23 Overall time: 00:23:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 1613151 / 23868802 = 0.0676 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:44:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:44:43: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:44:43: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:44:50: 1000000 INFO @ Fri, 26 Jun 2020 23:44:56: 2000000 INFO @ Fri, 26 Jun 2020 23:45:03: 3000000 INFO @ Fri, 26 Jun 2020 23:45:10: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:45:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:45:13: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:45:13: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:45:17: 5000000 INFO @ Fri, 26 Jun 2020 23:45:20: 1000000 INFO @ Fri, 26 Jun 2020 23:45:24: 6000000 INFO @ Fri, 26 Jun 2020 23:45:28: 2000000 INFO @ Fri, 26 Jun 2020 23:45:31: 7000000 INFO @ Fri, 26 Jun 2020 23:45:36: 3000000 INFO @ Fri, 26 Jun 2020 23:45:39: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:45:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:45:43: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:45:43: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:45:43: 4000000 INFO @ Fri, 26 Jun 2020 23:45:46: 9000000 INFO @ Fri, 26 Jun 2020 23:45:51: 5000000 INFO @ Fri, 26 Jun 2020 23:45:51: 1000000 INFO @ Fri, 26 Jun 2020 23:45:53: 10000000 INFO @ Fri, 26 Jun 2020 23:45:58: 2000000 INFO @ Fri, 26 Jun 2020 23:45:58: 6000000 INFO @ Fri, 26 Jun 2020 23:46:01: 11000000 INFO @ Fri, 26 Jun 2020 23:46:05: 3000000 INFO @ Fri, 26 Jun 2020 23:46:06: 7000000 INFO @ Fri, 26 Jun 2020 23:46:08: 12000000 INFO @ Fri, 26 Jun 2020 23:46:12: 4000000 INFO @ Fri, 26 Jun 2020 23:46:13: 8000000 INFO @ Fri, 26 Jun 2020 23:46:16: 13000000 INFO @ Fri, 26 Jun 2020 23:46:19: 5000000 INFO @ Fri, 26 Jun 2020 23:46:21: 9000000 INFO @ Fri, 26 Jun 2020 23:46:23: 14000000 INFO @ Fri, 26 Jun 2020 23:46:26: 6000000 INFO @ Fri, 26 Jun 2020 23:46:29: 10000000 INFO @ Fri, 26 Jun 2020 23:46:31: 15000000 INFO @ Fri, 26 Jun 2020 23:46:33: 7000000 INFO @ Fri, 26 Jun 2020 23:46:36: 11000000 INFO @ Fri, 26 Jun 2020 23:46:38: 16000000 INFO @ Fri, 26 Jun 2020 23:46:40: 8000000 INFO @ Fri, 26 Jun 2020 23:46:44: 12000000 INFO @ Fri, 26 Jun 2020 23:46:46: 17000000 INFO @ Fri, 26 Jun 2020 23:46:47: 9000000 INFO @ Fri, 26 Jun 2020 23:46:51: 13000000 INFO @ Fri, 26 Jun 2020 23:46:53: 18000000 INFO @ Fri, 26 Jun 2020 23:46:54: 10000000 INFO @ Fri, 26 Jun 2020 23:46:59: 14000000 INFO @ Fri, 26 Jun 2020 23:47:01: 19000000 INFO @ Fri, 26 Jun 2020 23:47:01: 11000000 INFO @ Fri, 26 Jun 2020 23:47:06: 15000000 INFO @ Fri, 26 Jun 2020 23:47:08: 12000000 INFO @ Fri, 26 Jun 2020 23:47:08: 20000000 INFO @ Fri, 26 Jun 2020 23:47:14: 16000000 INFO @ Fri, 26 Jun 2020 23:47:14: 13000000 INFO @ Fri, 26 Jun 2020 23:47:15: 21000000 INFO @ Fri, 26 Jun 2020 23:47:21: 14000000 INFO @ Fri, 26 Jun 2020 23:47:21: 17000000 INFO @ Fri, 26 Jun 2020 23:47:23: 22000000 INFO @ Fri, 26 Jun 2020 23:47:28: 15000000 INFO @ Fri, 26 Jun 2020 23:47:29: 18000000 INFO @ Fri, 26 Jun 2020 23:47:30: 23000000 INFO @ Fri, 26 Jun 2020 23:47:35: 16000000 INFO @ Fri, 26 Jun 2020 23:47:36: 19000000 INFO @ Fri, 26 Jun 2020 23:47:38: 24000000 INFO @ Fri, 26 Jun 2020 23:47:41: 17000000 INFO @ Fri, 26 Jun 2020 23:47:44: 20000000 INFO @ Fri, 26 Jun 2020 23:47:45: 25000000 INFO @ Fri, 26 Jun 2020 23:47:48: 18000000 INFO @ Fri, 26 Jun 2020 23:47:51: 21000000 INFO @ Fri, 26 Jun 2020 23:47:53: 26000000 INFO @ Fri, 26 Jun 2020 23:47:55: 19000000 INFO @ Fri, 26 Jun 2020 23:47:59: 22000000 INFO @ Fri, 26 Jun 2020 23:48:00: 27000000 INFO @ Fri, 26 Jun 2020 23:48:01: 20000000 INFO @ Fri, 26 Jun 2020 23:48:06: 23000000 INFO @ Fri, 26 Jun 2020 23:48:07: 28000000 INFO @ Fri, 26 Jun 2020 23:48:08: 21000000 INFO @ Fri, 26 Jun 2020 23:48:13: 24000000 INFO @ Fri, 26 Jun 2020 23:48:14: 29000000 INFO @ Fri, 26 Jun 2020 23:48:15: 22000000 INFO @ Fri, 26 Jun 2020 23:48:20: 25000000 INFO @ Fri, 26 Jun 2020 23:48:21: 30000000 INFO @ Fri, 26 Jun 2020 23:48:22: 23000000 INFO @ Fri, 26 Jun 2020 23:48:27: 26000000 INFO @ Fri, 26 Jun 2020 23:48:28: 24000000 INFO @ Fri, 26 Jun 2020 23:48:28: 31000000 INFO @ Fri, 26 Jun 2020 23:48:34: 27000000 INFO @ Fri, 26 Jun 2020 23:48:35: 25000000 INFO @ Fri, 26 Jun 2020 23:48:36: 32000000 INFO @ Fri, 26 Jun 2020 23:48:41: 28000000 INFO @ Fri, 26 Jun 2020 23:48:42: 26000000 INFO @ Fri, 26 Jun 2020 23:48:43: 33000000 INFO @ Fri, 26 Jun 2020 23:48:49: 29000000 INFO @ Fri, 26 Jun 2020 23:48:49: 27000000 INFO @ Fri, 26 Jun 2020 23:48:50: 34000000 INFO @ Fri, 26 Jun 2020 23:48:55: 28000000 INFO @ Fri, 26 Jun 2020 23:48:56: 30000000 INFO @ Fri, 26 Jun 2020 23:48:57: 35000000 INFO @ Fri, 26 Jun 2020 23:49:02: 29000000 INFO @ Fri, 26 Jun 2020 23:49:03: 31000000 INFO @ Fri, 26 Jun 2020 23:49:04: 36000000 INFO @ Fri, 26 Jun 2020 23:49:09: 30000000 INFO @ Fri, 26 Jun 2020 23:49:10: 32000000 INFO @ Fri, 26 Jun 2020 23:49:11: 37000000 INFO @ Fri, 26 Jun 2020 23:49:16: 31000000 INFO @ Fri, 26 Jun 2020 23:49:17: 33000000 INFO @ Fri, 26 Jun 2020 23:49:18: 38000000 INFO @ Fri, 26 Jun 2020 23:49:22: 32000000 INFO @ Fri, 26 Jun 2020 23:49:24: 34000000 INFO @ Fri, 26 Jun 2020 23:49:25: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 26 Jun 2020 23:49:29: 33000000 INFO @ Fri, 26 Jun 2020 23:49:31: 35000000 INFO @ Fri, 26 Jun 2020 23:49:32: 40000000 INFO @ Fri, 26 Jun 2020 23:49:36: 34000000 INFO @ Fri, 26 Jun 2020 23:49:38: 36000000 INFO @ Fri, 26 Jun 2020 23:49:39: 41000000 INFO @ Fri, 26 Jun 2020 23:49:42: 35000000 INFO @ Fri, 26 Jun 2020 23:49:45: 37000000 INFO @ Fri, 26 Jun 2020 23:49:46: 42000000 INFO @ Fri, 26 Jun 2020 23:49:49: 36000000 INFO @ Fri, 26 Jun 2020 23:49:52: 38000000 INFO @ Fri, 26 Jun 2020 23:49:53: 43000000 INFO @ Fri, 26 Jun 2020 23:49:56: 37000000 INFO @ Fri, 26 Jun 2020 23:49:59: 39000000 INFO @ Fri, 26 Jun 2020 23:50:01: 44000000 INFO @ Fri, 26 Jun 2020 23:50:02: 38000000 INFO @ Fri, 26 Jun 2020 23:50:07: 40000000 INFO @ Fri, 26 Jun 2020 23:50:08: 45000000 INFO @ Fri, 26 Jun 2020 23:50:09: 39000000 INFO @ Fri, 26 Jun 2020 23:50:14: 41000000 INFO @ Fri, 26 Jun 2020 23:50:15: 46000000 INFO @ Fri, 26 Jun 2020 23:50:16: 40000000 INFO @ Fri, 26 Jun 2020 23:50:21: 42000000 INFO @ Fri, 26 Jun 2020 23:50:22: 47000000 INFO @ Fri, 26 Jun 2020 23:50:23: #1 tag size is determined as 51 bps INFO @ Fri, 26 Jun 2020 23:50:23: #1 tag size = 51 INFO @ Fri, 26 Jun 2020 23:50:23: #1 total tags in treatment: 22087449 INFO @ Fri, 26 Jun 2020 23:50:23: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 23:50:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 23:50:23: #1 tags after filtering in treatment: 19308133 INFO @ Fri, 26 Jun 2020 23:50:23: #1 Redundant rate of treatment: 0.13 INFO @ Fri, 26 Jun 2020 23:50:23: #1 finished! INFO @ Fri, 26 Jun 2020 23:50:23: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 23:50:23: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 23:50:23: 41000000 INFO @ Fri, 26 Jun 2020 23:50:24: #2 number of paired peaks: 192 WARNING @ Fri, 26 Jun 2020 23:50:24: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Fri, 26 Jun 2020 23:50:24: start model_add_line... INFO @ Fri, 26 Jun 2020 23:50:24: start X-correlation... INFO @ Fri, 26 Jun 2020 23:50:24: end of X-cor INFO @ Fri, 26 Jun 2020 23:50:24: #2 finished! INFO @ Fri, 26 Jun 2020 23:50:24: #2 predicted fragment length is 65 bps INFO @ Fri, 26 Jun 2020 23:50:24: #2 alternative fragment length(s) may be 2,65,92,109 bps INFO @ Fri, 26 Jun 2020 23:50:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.05_model.r WARNING @ Fri, 26 Jun 2020 23:50:24: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 26 Jun 2020 23:50:24: #2 You may need to consider one of the other alternative d(s): 2,65,92,109 WARNING @ Fri, 26 Jun 2020 23:50:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 26 Jun 2020 23:50:24: #3 Call peaks... INFO @ Fri, 26 Jun 2020 23:50:24: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 23:50:28: 43000000 INFO @ Fri, 26 Jun 2020 23:50:30: 42000000 INFO @ Fri, 26 Jun 2020 23:50:36: 44000000 INFO @ Fri, 26 Jun 2020 23:50:37: 43000000 BigWig に変換しました。 INFO @ Fri, 26 Jun 2020 23:50:43: 45000000 INFO @ Fri, 26 Jun 2020 23:50:43: 44000000 INFO @ Fri, 26 Jun 2020 23:50:50: 45000000 INFO @ Fri, 26 Jun 2020 23:50:50: 46000000 INFO @ Fri, 26 Jun 2020 23:50:57: 46000000 INFO @ Fri, 26 Jun 2020 23:50:58: 47000000 INFO @ Fri, 26 Jun 2020 23:50:58: #1 tag size is determined as 51 bps INFO @ Fri, 26 Jun 2020 23:50:58: #1 tag size = 51 INFO @ Fri, 26 Jun 2020 23:50:58: #1 total tags in treatment: 22087449 INFO @ Fri, 26 Jun 2020 23:50:58: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 23:50:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 23:50:59: #1 tags after filtering in treatment: 19308133 INFO @ Fri, 26 Jun 2020 23:50:59: #1 Redundant rate of treatment: 0.13 INFO @ Fri, 26 Jun 2020 23:50:59: #1 finished! INFO @ Fri, 26 Jun 2020 23:50:59: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 23:50:59: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 23:51:00: #2 number of paired peaks: 192 WARNING @ Fri, 26 Jun 2020 23:51:00: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Fri, 26 Jun 2020 23:51:00: start model_add_line... INFO @ Fri, 26 Jun 2020 23:51:00: start X-correlation... INFO @ Fri, 26 Jun 2020 23:51:00: end of X-cor INFO @ Fri, 26 Jun 2020 23:51:00: #2 finished! INFO @ Fri, 26 Jun 2020 23:51:00: #2 predicted fragment length is 65 bps INFO @ Fri, 26 Jun 2020 23:51:00: #2 alternative fragment length(s) may be 2,65,92,109 bps INFO @ Fri, 26 Jun 2020 23:51:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.10_model.r WARNING @ Fri, 26 Jun 2020 23:51:00: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 26 Jun 2020 23:51:00: #2 You may need to consider one of the other alternative d(s): 2,65,92,109 WARNING @ Fri, 26 Jun 2020 23:51:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 26 Jun 2020 23:51:00: #3 Call peaks... INFO @ Fri, 26 Jun 2020 23:51:00: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 23:51:00: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 23:51:03: 47000000 INFO @ Fri, 26 Jun 2020 23:51:04: #1 tag size is determined as 51 bps INFO @ Fri, 26 Jun 2020 23:51:04: #1 tag size = 51 INFO @ Fri, 26 Jun 2020 23:51:04: #1 total tags in treatment: 22087449 INFO @ Fri, 26 Jun 2020 23:51:04: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 23:51:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 23:51:04: #1 tags after filtering in treatment: 19308133 INFO @ Fri, 26 Jun 2020 23:51:04: #1 Redundant rate of treatment: 0.13 INFO @ Fri, 26 Jun 2020 23:51:04: #1 finished! INFO @ Fri, 26 Jun 2020 23:51:04: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 23:51:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 23:51:06: #2 number of paired peaks: 192 WARNING @ Fri, 26 Jun 2020 23:51:06: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Fri, 26 Jun 2020 23:51:06: start model_add_line... INFO @ Fri, 26 Jun 2020 23:51:06: start X-correlation... INFO @ Fri, 26 Jun 2020 23:51:06: end of X-cor INFO @ Fri, 26 Jun 2020 23:51:06: #2 finished! INFO @ Fri, 26 Jun 2020 23:51:06: #2 predicted fragment length is 65 bps INFO @ Fri, 26 Jun 2020 23:51:06: #2 alternative fragment length(s) may be 2,65,92,109 bps INFO @ Fri, 26 Jun 2020 23:51:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.20_model.r WARNING @ Fri, 26 Jun 2020 23:51:06: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 26 Jun 2020 23:51:06: #2 You may need to consider one of the other alternative d(s): 2,65,92,109 WARNING @ Fri, 26 Jun 2020 23:51:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 26 Jun 2020 23:51:06: #3 Call peaks... INFO @ Fri, 26 Jun 2020 23:51:06: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 23:51:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.05_peaks.xls INFO @ Fri, 26 Jun 2020 23:51:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.05_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 23:51:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.05_summits.bed INFO @ Fri, 26 Jun 2020 23:51:17: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (2101 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 23:51:37: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 23:51:43: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 23:51:54: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.10_peaks.xls INFO @ Fri, 26 Jun 2020 23:51:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.10_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 23:51:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.10_summits.bed INFO @ Fri, 26 Jun 2020 23:51:54: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1085 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 23:52:00: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.20_peaks.xls INFO @ Fri, 26 Jun 2020 23:52:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.20_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 23:52:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4085367/SRX4085367.20_summits.bed INFO @ Fri, 26 Jun 2020 23:52:00: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (404 records, 4 fields): 1 millis CompletedMACS2peakCalling