Job ID = 12265695 SRX = SRX4082393 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:12:58 79358678 reads; of these: 79358678 (100.00%) were paired; of these: 5720243 (7.21%) aligned concordantly 0 times 64444794 (81.21%) aligned concordantly exactly 1 time 9193641 (11.58%) aligned concordantly >1 times ---- 5720243 pairs aligned concordantly 0 times; of these: 3156887 (55.19%) aligned discordantly 1 time ---- 2563356 pairs aligned 0 times concordantly or discordantly; of these: 5126712 mates make up the pairs; of these: 3166629 (61.77%) aligned 0 times 968111 (18.88%) aligned exactly 1 time 991972 (19.35%) aligned >1 times 98.00% overall alignment rate Time searching: 01:12:59 Overall time: 01:12:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 33593706 / 72757458 = 0.4617 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:01:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:01:20: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:01:20: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:01:28: 1000000 INFO @ Sat, 03 Apr 2021 10:01:36: 2000000 INFO @ Sat, 03 Apr 2021 10:01:42: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:01:49: 4000000 INFO @ Sat, 03 Apr 2021 10:01:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:01:50: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:01:50: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:01:56: 5000000 INFO @ Sat, 03 Apr 2021 10:01:57: 1000000 INFO @ Sat, 03 Apr 2021 10:02:03: 6000000 INFO @ Sat, 03 Apr 2021 10:02:04: 2000000 INFO @ Sat, 03 Apr 2021 10:02:10: 7000000 INFO @ Sat, 03 Apr 2021 10:02:10: 3000000 INFO @ Sat, 03 Apr 2021 10:02:16: 4000000 INFO @ Sat, 03 Apr 2021 10:02:17: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:02:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:02:20: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:02:20: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:02:23: 5000000 INFO @ Sat, 03 Apr 2021 10:02:24: 9000000 INFO @ Sat, 03 Apr 2021 10:02:28: 1000000 INFO @ Sat, 03 Apr 2021 10:02:29: 6000000 INFO @ Sat, 03 Apr 2021 10:02:32: 10000000 INFO @ Sat, 03 Apr 2021 10:02:36: 2000000 INFO @ Sat, 03 Apr 2021 10:02:36: 7000000 INFO @ Sat, 03 Apr 2021 10:02:40: 11000000 INFO @ Sat, 03 Apr 2021 10:02:43: 3000000 INFO @ Sat, 03 Apr 2021 10:02:43: 8000000 INFO @ Sat, 03 Apr 2021 10:02:47: 12000000 INFO @ Sat, 03 Apr 2021 10:02:50: 9000000 INFO @ Sat, 03 Apr 2021 10:02:50: 4000000 INFO @ Sat, 03 Apr 2021 10:02:54: 13000000 INFO @ Sat, 03 Apr 2021 10:02:56: 10000000 INFO @ Sat, 03 Apr 2021 10:02:58: 5000000 INFO @ Sat, 03 Apr 2021 10:03:01: 14000000 INFO @ Sat, 03 Apr 2021 10:03:03: 11000000 INFO @ Sat, 03 Apr 2021 10:03:06: 6000000 INFO @ Sat, 03 Apr 2021 10:03:07: 15000000 INFO @ Sat, 03 Apr 2021 10:03:10: 12000000 INFO @ Sat, 03 Apr 2021 10:03:13: 7000000 INFO @ Sat, 03 Apr 2021 10:03:15: 16000000 INFO @ Sat, 03 Apr 2021 10:03:17: 13000000 INFO @ Sat, 03 Apr 2021 10:03:21: 8000000 INFO @ Sat, 03 Apr 2021 10:03:22: 17000000 INFO @ Sat, 03 Apr 2021 10:03:24: 14000000 INFO @ Sat, 03 Apr 2021 10:03:28: 9000000 INFO @ Sat, 03 Apr 2021 10:03:28: 18000000 INFO @ Sat, 03 Apr 2021 10:03:31: 15000000 INFO @ Sat, 03 Apr 2021 10:03:35: 10000000 INFO @ Sat, 03 Apr 2021 10:03:36: 19000000 INFO @ Sat, 03 Apr 2021 10:03:38: 16000000 INFO @ Sat, 03 Apr 2021 10:03:42: 11000000 INFO @ Sat, 03 Apr 2021 10:03:43: 20000000 INFO @ Sat, 03 Apr 2021 10:03:45: 17000000 INFO @ Sat, 03 Apr 2021 10:03:49: 12000000 INFO @ Sat, 03 Apr 2021 10:03:50: 21000000 INFO @ Sat, 03 Apr 2021 10:03:52: 18000000 INFO @ Sat, 03 Apr 2021 10:03:57: 13000000 INFO @ Sat, 03 Apr 2021 10:03:57: 22000000 INFO @ Sat, 03 Apr 2021 10:04:00: 19000000 INFO @ Sat, 03 Apr 2021 10:04:04: 14000000 INFO @ Sat, 03 Apr 2021 10:04:05: 23000000 INFO @ Sat, 03 Apr 2021 10:04:08: 20000000 INFO @ Sat, 03 Apr 2021 10:04:12: 15000000 INFO @ Sat, 03 Apr 2021 10:04:12: 24000000 INFO @ Sat, 03 Apr 2021 10:04:15: 21000000 INFO @ Sat, 03 Apr 2021 10:04:19: 25000000 INFO @ Sat, 03 Apr 2021 10:04:20: 16000000 INFO @ Sat, 03 Apr 2021 10:04:23: 22000000 INFO @ Sat, 03 Apr 2021 10:04:27: 26000000 INFO @ Sat, 03 Apr 2021 10:04:27: 17000000 INFO @ Sat, 03 Apr 2021 10:04:29: 23000000 INFO @ Sat, 03 Apr 2021 10:04:34: 27000000 INFO @ Sat, 03 Apr 2021 10:04:35: 18000000 INFO @ Sat, 03 Apr 2021 10:04:37: 24000000 INFO @ Sat, 03 Apr 2021 10:04:41: 28000000 INFO @ Sat, 03 Apr 2021 10:04:43: 19000000 INFO @ Sat, 03 Apr 2021 10:04:44: 25000000 INFO @ Sat, 03 Apr 2021 10:04:48: 29000000 INFO @ Sat, 03 Apr 2021 10:04:50: 20000000 INFO @ Sat, 03 Apr 2021 10:04:51: 26000000 INFO @ Sat, 03 Apr 2021 10:04:56: 30000000 INFO @ Sat, 03 Apr 2021 10:04:57: 21000000 INFO @ Sat, 03 Apr 2021 10:04:58: 27000000 INFO @ Sat, 03 Apr 2021 10:05:04: 28000000 INFO @ Sat, 03 Apr 2021 10:05:04: 31000000 INFO @ Sat, 03 Apr 2021 10:05:04: 22000000 INFO @ Sat, 03 Apr 2021 10:05:11: 29000000 INFO @ Sat, 03 Apr 2021 10:05:12: 23000000 INFO @ Sat, 03 Apr 2021 10:05:13: 32000000 INFO @ Sat, 03 Apr 2021 10:05:17: 30000000 INFO @ Sat, 03 Apr 2021 10:05:20: 24000000 INFO @ Sat, 03 Apr 2021 10:05:21: 33000000 INFO @ Sat, 03 Apr 2021 10:05:24: 31000000 INFO @ Sat, 03 Apr 2021 10:05:27: 25000000 INFO @ Sat, 03 Apr 2021 10:05:28: 34000000 INFO @ Sat, 03 Apr 2021 10:05:30: 32000000 INFO @ Sat, 03 Apr 2021 10:05:34: 26000000 INFO @ Sat, 03 Apr 2021 10:05:37: 35000000 INFO @ Sat, 03 Apr 2021 10:05:37: 33000000 INFO @ Sat, 03 Apr 2021 10:05:42: 27000000 INFO @ Sat, 03 Apr 2021 10:05:44: 34000000 INFO @ Sat, 03 Apr 2021 10:05:44: 36000000 INFO @ Sat, 03 Apr 2021 10:05:49: 35000000 INFO @ Sat, 03 Apr 2021 10:05:50: 28000000 INFO @ Sat, 03 Apr 2021 10:05:52: 37000000 INFO @ Sat, 03 Apr 2021 10:05:56: 36000000 INFO @ Sat, 03 Apr 2021 10:05:57: 29000000 INFO @ Sat, 03 Apr 2021 10:06:00: 38000000 INFO @ Sat, 03 Apr 2021 10:06:03: 37000000 INFO @ Sat, 03 Apr 2021 10:06:05: 30000000 INFO @ Sat, 03 Apr 2021 10:06:08: 39000000 INFO @ Sat, 03 Apr 2021 10:06:09: 38000000 INFO @ Sat, 03 Apr 2021 10:06:13: 31000000 INFO @ Sat, 03 Apr 2021 10:06:15: 39000000 INFO @ Sat, 03 Apr 2021 10:06:17: 40000000 INFO @ Sat, 03 Apr 2021 10:06:21: 40000000 INFO @ Sat, 03 Apr 2021 10:06:21: 32000000 INFO @ Sat, 03 Apr 2021 10:06:25: 41000000 INFO @ Sat, 03 Apr 2021 10:06:27: 41000000 INFO @ Sat, 03 Apr 2021 10:06:28: 33000000 INFO @ Sat, 03 Apr 2021 10:06:34: 42000000 INFO @ Sat, 03 Apr 2021 10:06:34: 42000000 INFO @ Sat, 03 Apr 2021 10:06:35: 34000000 INFO @ Sat, 03 Apr 2021 10:06:40: 43000000 INFO @ Sat, 03 Apr 2021 10:06:42: 43000000 INFO @ Sat, 03 Apr 2021 10:06:43: 35000000 INFO @ Sat, 03 Apr 2021 10:06:46: 44000000 INFO @ Sat, 03 Apr 2021 10:06:49: 44000000 INFO @ Sat, 03 Apr 2021 10:06:51: 36000000 INFO @ Sat, 03 Apr 2021 10:06:53: 45000000 INFO @ Sat, 03 Apr 2021 10:06:58: 45000000 INFO @ Sat, 03 Apr 2021 10:06:58: 37000000 INFO @ Sat, 03 Apr 2021 10:06:59: 46000000 INFO @ Sat, 03 Apr 2021 10:07:05: 46000000 INFO @ Sat, 03 Apr 2021 10:07:05: 38000000 INFO @ Sat, 03 Apr 2021 10:07:06: 47000000 INFO @ Sat, 03 Apr 2021 10:07:11: 47000000 INFO @ Sat, 03 Apr 2021 10:07:13: 39000000 INFO @ Sat, 03 Apr 2021 10:07:13: 48000000 INFO @ Sat, 03 Apr 2021 10:07:19: 48000000 INFO @ Sat, 03 Apr 2021 10:07:21: 49000000 INFO @ Sat, 03 Apr 2021 10:07:21: 40000000 INFO @ Sat, 03 Apr 2021 10:07:26: 49000000 INFO @ Sat, 03 Apr 2021 10:07:28: 50000000 INFO @ Sat, 03 Apr 2021 10:07:28: 41000000 INFO @ Sat, 03 Apr 2021 10:07:34: 50000000 INFO @ Sat, 03 Apr 2021 10:07:35: 42000000 INFO @ Sat, 03 Apr 2021 10:07:35: 51000000 INFO @ Sat, 03 Apr 2021 10:07:40: 51000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 10:07:42: 52000000 INFO @ Sat, 03 Apr 2021 10:07:42: 43000000 INFO @ Sat, 03 Apr 2021 10:07:48: 52000000 INFO @ Sat, 03 Apr 2021 10:07:49: 53000000 INFO @ Sat, 03 Apr 2021 10:07:50: 44000000 INFO @ Sat, 03 Apr 2021 10:07:55: 53000000 INFO @ Sat, 03 Apr 2021 10:07:56: 54000000 INFO @ Sat, 03 Apr 2021 10:07:59: 45000000 INFO @ Sat, 03 Apr 2021 10:08:02: 54000000 INFO @ Sat, 03 Apr 2021 10:08:03: 55000000 INFO @ Sat, 03 Apr 2021 10:08:06: 46000000 INFO @ Sat, 03 Apr 2021 10:08:09: 55000000 INFO @ Sat, 03 Apr 2021 10:08:11: 56000000 INFO @ Sat, 03 Apr 2021 10:08:14: 47000000 INFO @ Sat, 03 Apr 2021 10:08:16: 56000000 INFO @ Sat, 03 Apr 2021 10:08:18: 57000000 INFO @ Sat, 03 Apr 2021 10:08:21: 48000000 INFO @ Sat, 03 Apr 2021 10:08:22: 57000000 INFO @ Sat, 03 Apr 2021 10:08:24: 58000000 INFO @ Sat, 03 Apr 2021 10:08:28: 49000000 INFO @ Sat, 03 Apr 2021 10:08:29: 58000000 INFO @ Sat, 03 Apr 2021 10:08:31: 59000000 INFO @ Sat, 03 Apr 2021 10:08:36: 59000000 INFO @ Sat, 03 Apr 2021 10:08:36: 50000000 INFO @ Sat, 03 Apr 2021 10:08:38: 60000000 INFO @ Sat, 03 Apr 2021 10:08:42: 60000000 INFO @ Sat, 03 Apr 2021 10:08:43: 51000000 INFO @ Sat, 03 Apr 2021 10:08:44: 61000000 INFO @ Sat, 03 Apr 2021 10:08:48: 61000000 INFO @ Sat, 03 Apr 2021 10:08:50: 52000000 INFO @ Sat, 03 Apr 2021 10:08:51: 62000000 INFO @ Sat, 03 Apr 2021 10:08:56: 62000000 INFO @ Sat, 03 Apr 2021 10:08:58: 53000000 INFO @ Sat, 03 Apr 2021 10:08:58: 63000000 INFO @ Sat, 03 Apr 2021 10:09:03: 63000000 INFO @ Sat, 03 Apr 2021 10:09:05: 64000000 INFO @ Sat, 03 Apr 2021 10:09:06: 54000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 10:09:09: 64000000 INFO @ Sat, 03 Apr 2021 10:09:12: 65000000 INFO @ Sat, 03 Apr 2021 10:09:14: 55000000 INFO @ Sat, 03 Apr 2021 10:09:17: 65000000 INFO @ Sat, 03 Apr 2021 10:09:19: 66000000 INFO @ Sat, 03 Apr 2021 10:09:21: 56000000 INFO @ Sat, 03 Apr 2021 10:09:23: 66000000 INFO @ Sat, 03 Apr 2021 10:09:26: 67000000 INFO @ Sat, 03 Apr 2021 10:09:29: 57000000 INFO @ Sat, 03 Apr 2021 10:09:30: 67000000 INFO @ Sat, 03 Apr 2021 10:09:33: 68000000 INFO @ Sat, 03 Apr 2021 10:09:36: 58000000 INFO @ Sat, 03 Apr 2021 10:09:38: 68000000 INFO @ Sat, 03 Apr 2021 10:09:40: 69000000 INFO @ Sat, 03 Apr 2021 10:09:44: 59000000 INFO @ Sat, 03 Apr 2021 10:09:45: 69000000 INFO @ Sat, 03 Apr 2021 10:09:47: 70000000 INFO @ Sat, 03 Apr 2021 10:09:51: 60000000 INFO @ Sat, 03 Apr 2021 10:09:53: 70000000 INFO @ Sat, 03 Apr 2021 10:09:54: 71000000 INFO @ Sat, 03 Apr 2021 10:09:58: 61000000 INFO @ Sat, 03 Apr 2021 10:09:59: 71000000 INFO @ Sat, 03 Apr 2021 10:10:01: 72000000 INFO @ Sat, 03 Apr 2021 10:10:05: 62000000 INFO @ Sat, 03 Apr 2021 10:10:06: 72000000 INFO @ Sat, 03 Apr 2021 10:10:08: 73000000 INFO @ Sat, 03 Apr 2021 10:10:12: 63000000 INFO @ Sat, 03 Apr 2021 10:10:14: 73000000 INFO @ Sat, 03 Apr 2021 10:10:15: 74000000 INFO @ Sat, 03 Apr 2021 10:10:19: 64000000 INFO @ Sat, 03 Apr 2021 10:10:20: 74000000 INFO @ Sat, 03 Apr 2021 10:10:22: 75000000 INFO @ Sat, 03 Apr 2021 10:10:26: 65000000 INFO @ Sat, 03 Apr 2021 10:10:28: 75000000 INFO @ Sat, 03 Apr 2021 10:10:29: 76000000 INFO @ Sat, 03 Apr 2021 10:10:33: 66000000 INFO @ Sat, 03 Apr 2021 10:10:35: 76000000 INFO @ Sat, 03 Apr 2021 10:10:37: 77000000 INFO @ Sat, 03 Apr 2021 10:10:40: 67000000 INFO @ Sat, 03 Apr 2021 10:10:42: 77000000 INFO @ Sat, 03 Apr 2021 10:10:44: 78000000 INFO @ Sat, 03 Apr 2021 10:10:48: 68000000 INFO @ Sat, 03 Apr 2021 10:10:50: 78000000 INFO @ Sat, 03 Apr 2021 10:10:52: 79000000 INFO @ Sat, 03 Apr 2021 10:10:55: 69000000 INFO @ Sat, 03 Apr 2021 10:10:58: 79000000 INFO @ Sat, 03 Apr 2021 10:10:59: 80000000 INFO @ Sat, 03 Apr 2021 10:11:03: 70000000 INFO @ Sat, 03 Apr 2021 10:11:05: 80000000 INFO @ Sat, 03 Apr 2021 10:11:06: 81000000 INFO @ Sat, 03 Apr 2021 10:11:10: 71000000 INFO @ Sat, 03 Apr 2021 10:11:12: 81000000 INFO @ Sat, 03 Apr 2021 10:11:13: 82000000 INFO @ Sat, 03 Apr 2021 10:11:18: 72000000 INFO @ Sat, 03 Apr 2021 10:11:19: 82000000 INFO @ Sat, 03 Apr 2021 10:11:20: 83000000 INFO @ Sat, 03 Apr 2021 10:11:25: 73000000 INFO @ Sat, 03 Apr 2021 10:11:26: 83000000 INFO @ Sat, 03 Apr 2021 10:11:27: 84000000 INFO @ Sat, 03 Apr 2021 10:11:32: 74000000 INFO @ Sat, 03 Apr 2021 10:11:33: 84000000 INFO @ Sat, 03 Apr 2021 10:11:34: 85000000 INFO @ Sat, 03 Apr 2021 10:11:39: 85000000 INFO @ Sat, 03 Apr 2021 10:11:40: 75000000 INFO @ Sat, 03 Apr 2021 10:11:41: 86000000 INFO @ Sat, 03 Apr 2021 10:11:46: 86000000 INFO @ Sat, 03 Apr 2021 10:11:47: 76000000 INFO @ Sat, 03 Apr 2021 10:11:47: 87000000 INFO @ Sat, 03 Apr 2021 10:11:53: 87000000 INFO @ Sat, 03 Apr 2021 10:11:54: 88000000 INFO @ Sat, 03 Apr 2021 10:11:55: 77000000 INFO @ Sat, 03 Apr 2021 10:11:57: #1 tag size is determined as 48 bps INFO @ Sat, 03 Apr 2021 10:11:57: #1 tag size = 48 INFO @ Sat, 03 Apr 2021 10:11:57: #1 total tags in treatment: 40500514 INFO @ Sat, 03 Apr 2021 10:11:57: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:11:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:11:58: #1 tags after filtering in treatment: 20558761 INFO @ Sat, 03 Apr 2021 10:11:58: #1 Redundant rate of treatment: 0.49 INFO @ Sat, 03 Apr 2021 10:11:58: #1 finished! INFO @ Sat, 03 Apr 2021 10:11:58: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:11:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:11:59: 88000000 INFO @ Sat, 03 Apr 2021 10:11:59: #2 number of paired peaks: 139 WARNING @ Sat, 03 Apr 2021 10:11:59: Fewer paired peaks (139) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 139 pairs to build model! INFO @ Sat, 03 Apr 2021 10:11:59: start model_add_line... INFO @ Sat, 03 Apr 2021 10:11:59: start X-correlation... INFO @ Sat, 03 Apr 2021 10:11:59: end of X-cor INFO @ Sat, 03 Apr 2021 10:11:59: #2 finished! INFO @ Sat, 03 Apr 2021 10:11:59: #2 predicted fragment length is 63 bps INFO @ Sat, 03 Apr 2021 10:11:59: #2 alternative fragment length(s) may be 4,63 bps INFO @ Sat, 03 Apr 2021 10:11:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.10_model.r WARNING @ Sat, 03 Apr 2021 10:11:59: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:11:59: #2 You may need to consider one of the other alternative d(s): 4,63 WARNING @ Sat, 03 Apr 2021 10:11:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:11:59: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:11:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:12:02: #1 tag size is determined as 48 bps INFO @ Sat, 03 Apr 2021 10:12:02: #1 tag size = 48 INFO @ Sat, 03 Apr 2021 10:12:02: #1 total tags in treatment: 40500514 INFO @ Sat, 03 Apr 2021 10:12:02: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:12:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:12:03: 78000000 INFO @ Sat, 03 Apr 2021 10:12:03: #1 tags after filtering in treatment: 20558761 INFO @ Sat, 03 Apr 2021 10:12:03: #1 Redundant rate of treatment: 0.49 INFO @ Sat, 03 Apr 2021 10:12:03: #1 finished! INFO @ Sat, 03 Apr 2021 10:12:03: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:12:03: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:12:04: #2 number of paired peaks: 139 WARNING @ Sat, 03 Apr 2021 10:12:04: Fewer paired peaks (139) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 139 pairs to build model! INFO @ Sat, 03 Apr 2021 10:12:04: start model_add_line... INFO @ Sat, 03 Apr 2021 10:12:04: start X-correlation... INFO @ Sat, 03 Apr 2021 10:12:04: end of X-cor INFO @ Sat, 03 Apr 2021 10:12:04: #2 finished! INFO @ Sat, 03 Apr 2021 10:12:04: #2 predicted fragment length is 63 bps INFO @ Sat, 03 Apr 2021 10:12:04: #2 alternative fragment length(s) may be 4,63 bps INFO @ Sat, 03 Apr 2021 10:12:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.05_model.r WARNING @ Sat, 03 Apr 2021 10:12:04: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:12:04: #2 You may need to consider one of the other alternative d(s): 4,63 WARNING @ Sat, 03 Apr 2021 10:12:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:12:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:12:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:12:10: 79000000 INFO @ Sat, 03 Apr 2021 10:12:18: 80000000 INFO @ Sat, 03 Apr 2021 10:12:25: 81000000 INFO @ Sat, 03 Apr 2021 10:12:32: 82000000 INFO @ Sat, 03 Apr 2021 10:12:35: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:12:38: 83000000 INFO @ Sat, 03 Apr 2021 10:12:40: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:12:46: 84000000 INFO @ Sat, 03 Apr 2021 10:12:53: 85000000 INFO @ Sat, 03 Apr 2021 10:12:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.10_peaks.xls INFO @ Sat, 03 Apr 2021 10:12:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:12:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.10_summits.bed INFO @ Sat, 03 Apr 2021 10:12:56: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (7021 records, 4 fields): 59 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:12:59: 86000000 INFO @ Sat, 03 Apr 2021 10:13:01: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.05_peaks.xls INFO @ Sat, 03 Apr 2021 10:13:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:13:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.05_summits.bed INFO @ Sat, 03 Apr 2021 10:13:01: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (13300 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:13:06: 87000000 INFO @ Sat, 03 Apr 2021 10:13:12: 88000000 INFO @ Sat, 03 Apr 2021 10:13:15: #1 tag size is determined as 48 bps INFO @ Sat, 03 Apr 2021 10:13:15: #1 tag size = 48 INFO @ Sat, 03 Apr 2021 10:13:15: #1 total tags in treatment: 40500514 INFO @ Sat, 03 Apr 2021 10:13:15: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:13:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:13:16: #1 tags after filtering in treatment: 20558761 INFO @ Sat, 03 Apr 2021 10:13:16: #1 Redundant rate of treatment: 0.49 INFO @ Sat, 03 Apr 2021 10:13:16: #1 finished! INFO @ Sat, 03 Apr 2021 10:13:16: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:13:16: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:13:17: #2 number of paired peaks: 139 WARNING @ Sat, 03 Apr 2021 10:13:17: Fewer paired peaks (139) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 139 pairs to build model! INFO @ Sat, 03 Apr 2021 10:13:17: start model_add_line... INFO @ Sat, 03 Apr 2021 10:13:17: start X-correlation... INFO @ Sat, 03 Apr 2021 10:13:17: end of X-cor INFO @ Sat, 03 Apr 2021 10:13:17: #2 finished! INFO @ Sat, 03 Apr 2021 10:13:17: #2 predicted fragment length is 63 bps INFO @ Sat, 03 Apr 2021 10:13:17: #2 alternative fragment length(s) may be 4,63 bps INFO @ Sat, 03 Apr 2021 10:13:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.20_model.r WARNING @ Sat, 03 Apr 2021 10:13:17: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:13:17: #2 You may need to consider one of the other alternative d(s): 4,63 WARNING @ Sat, 03 Apr 2021 10:13:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:13:17: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:13:17: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:13:52: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:14:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.20_peaks.xls INFO @ Sat, 03 Apr 2021 10:14:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:14:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082393/SRX4082393.20_summits.bed INFO @ Sat, 03 Apr 2021 10:14:12: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (2308 records, 4 fields): 4 millis CompletedMACS2peakCalling