Job ID = 12265522 SRX = SRX4082391 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:50:57 82365686 reads; of these: 82365686 (100.00%) were paired; of these: 11342006 (13.77%) aligned concordantly 0 times 64414760 (78.21%) aligned concordantly exactly 1 time 6608920 (8.02%) aligned concordantly >1 times ---- 11342006 pairs aligned concordantly 0 times; of these: 1783984 (15.73%) aligned discordantly 1 time ---- 9558022 pairs aligned 0 times concordantly or discordantly; of these: 19116044 mates make up the pairs; of these: 11271951 (58.97%) aligned 0 times 6563106 (34.33%) aligned exactly 1 time 1280987 (6.70%) aligned >1 times 93.16% overall alignment rate Time searching: 00:50:57 Overall time: 00:50:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 38873061 / 72742549 = 0.5344 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:48:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:48:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:48:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:48:59: 1000000 INFO @ Sat, 03 Apr 2021 08:49:05: 2000000 INFO @ Sat, 03 Apr 2021 08:49:11: 3000000 INFO @ Sat, 03 Apr 2021 08:49:17: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:49:22: 5000000 INFO @ Sat, 03 Apr 2021 08:49:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:49:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:49:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:49:28: 6000000 INFO @ Sat, 03 Apr 2021 08:49:29: 1000000 INFO @ Sat, 03 Apr 2021 08:49:34: 7000000 INFO @ Sat, 03 Apr 2021 08:49:34: 2000000 INFO @ Sat, 03 Apr 2021 08:49:40: 3000000 INFO @ Sat, 03 Apr 2021 08:49:40: 8000000 INFO @ Sat, 03 Apr 2021 08:49:45: 4000000 INFO @ Sat, 03 Apr 2021 08:49:46: 9000000 INFO @ Sat, 03 Apr 2021 08:49:51: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:49:52: 10000000 INFO @ Sat, 03 Apr 2021 08:49:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:49:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:49:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:49:56: 6000000 INFO @ Sat, 03 Apr 2021 08:49:58: 11000000 INFO @ Sat, 03 Apr 2021 08:50:00: 1000000 INFO @ Sat, 03 Apr 2021 08:50:02: 7000000 INFO @ Sat, 03 Apr 2021 08:50:04: 12000000 INFO @ Sat, 03 Apr 2021 08:50:06: 2000000 INFO @ Sat, 03 Apr 2021 08:50:08: 8000000 INFO @ Sat, 03 Apr 2021 08:50:10: 13000000 INFO @ Sat, 03 Apr 2021 08:50:12: 3000000 INFO @ Sat, 03 Apr 2021 08:50:13: 9000000 INFO @ Sat, 03 Apr 2021 08:50:16: 14000000 INFO @ Sat, 03 Apr 2021 08:50:18: 4000000 INFO @ Sat, 03 Apr 2021 08:50:19: 10000000 INFO @ Sat, 03 Apr 2021 08:50:22: 15000000 INFO @ Sat, 03 Apr 2021 08:50:24: 11000000 INFO @ Sat, 03 Apr 2021 08:50:24: 5000000 INFO @ Sat, 03 Apr 2021 08:50:28: 16000000 INFO @ Sat, 03 Apr 2021 08:50:29: 12000000 INFO @ Sat, 03 Apr 2021 08:50:30: 6000000 INFO @ Sat, 03 Apr 2021 08:50:34: 17000000 INFO @ Sat, 03 Apr 2021 08:50:35: 13000000 INFO @ Sat, 03 Apr 2021 08:50:36: 7000000 INFO @ Sat, 03 Apr 2021 08:50:40: 18000000 INFO @ Sat, 03 Apr 2021 08:50:40: 14000000 INFO @ Sat, 03 Apr 2021 08:50:42: 8000000 INFO @ Sat, 03 Apr 2021 08:50:45: 19000000 INFO @ Sat, 03 Apr 2021 08:50:46: 15000000 INFO @ Sat, 03 Apr 2021 08:50:48: 9000000 INFO @ Sat, 03 Apr 2021 08:50:51: 20000000 INFO @ Sat, 03 Apr 2021 08:50:51: 16000000 INFO @ Sat, 03 Apr 2021 08:50:53: 10000000 INFO @ Sat, 03 Apr 2021 08:50:56: 21000000 INFO @ Sat, 03 Apr 2021 08:50:56: 17000000 INFO @ Sat, 03 Apr 2021 08:50:59: 11000000 INFO @ Sat, 03 Apr 2021 08:51:02: 18000000 INFO @ Sat, 03 Apr 2021 08:51:02: 22000000 INFO @ Sat, 03 Apr 2021 08:51:05: 12000000 INFO @ Sat, 03 Apr 2021 08:51:06: 19000000 INFO @ Sat, 03 Apr 2021 08:51:07: 23000000 INFO @ Sat, 03 Apr 2021 08:51:10: 13000000 INFO @ Sat, 03 Apr 2021 08:51:11: 20000000 INFO @ Sat, 03 Apr 2021 08:51:13: 24000000 INFO @ Sat, 03 Apr 2021 08:51:16: 14000000 INFO @ Sat, 03 Apr 2021 08:51:16: 21000000 INFO @ Sat, 03 Apr 2021 08:51:19: 25000000 INFO @ Sat, 03 Apr 2021 08:51:21: 22000000 INFO @ Sat, 03 Apr 2021 08:51:22: 15000000 INFO @ Sat, 03 Apr 2021 08:51:25: 26000000 INFO @ Sat, 03 Apr 2021 08:51:25: 23000000 INFO @ Sat, 03 Apr 2021 08:51:28: 16000000 INFO @ Sat, 03 Apr 2021 08:51:30: 24000000 INFO @ Sat, 03 Apr 2021 08:51:30: 27000000 INFO @ Sat, 03 Apr 2021 08:51:33: 17000000 INFO @ Sat, 03 Apr 2021 08:51:34: 25000000 INFO @ Sat, 03 Apr 2021 08:51:36: 28000000 INFO @ Sat, 03 Apr 2021 08:51:39: 26000000 INFO @ Sat, 03 Apr 2021 08:51:39: 18000000 INFO @ Sat, 03 Apr 2021 08:51:42: 29000000 INFO @ Sat, 03 Apr 2021 08:51:43: 27000000 INFO @ Sat, 03 Apr 2021 08:51:45: 19000000 INFO @ Sat, 03 Apr 2021 08:51:47: 30000000 INFO @ Sat, 03 Apr 2021 08:51:48: 28000000 INFO @ Sat, 03 Apr 2021 08:51:50: 20000000 INFO @ Sat, 03 Apr 2021 08:51:53: 29000000 INFO @ Sat, 03 Apr 2021 08:51:53: 31000000 INFO @ Sat, 03 Apr 2021 08:51:56: 21000000 INFO @ Sat, 03 Apr 2021 08:51:57: 30000000 INFO @ Sat, 03 Apr 2021 08:51:59: 32000000 INFO @ Sat, 03 Apr 2021 08:52:02: 31000000 INFO @ Sat, 03 Apr 2021 08:52:02: 22000000 INFO @ Sat, 03 Apr 2021 08:52:05: 33000000 INFO @ Sat, 03 Apr 2021 08:52:07: 32000000 INFO @ Sat, 03 Apr 2021 08:52:08: 23000000 INFO @ Sat, 03 Apr 2021 08:52:11: 34000000 INFO @ Sat, 03 Apr 2021 08:52:11: 33000000 INFO @ Sat, 03 Apr 2021 08:52:14: 24000000 INFO @ Sat, 03 Apr 2021 08:52:16: 34000000 INFO @ Sat, 03 Apr 2021 08:52:17: 35000000 INFO @ Sat, 03 Apr 2021 08:52:20: 25000000 INFO @ Sat, 03 Apr 2021 08:52:21: 35000000 INFO @ Sat, 03 Apr 2021 08:52:23: 36000000 INFO @ Sat, 03 Apr 2021 08:52:25: 36000000 INFO @ Sat, 03 Apr 2021 08:52:26: 26000000 INFO @ Sat, 03 Apr 2021 08:52:29: 37000000 INFO @ Sat, 03 Apr 2021 08:52:30: 37000000 INFO @ Sat, 03 Apr 2021 08:52:32: 27000000 INFO @ Sat, 03 Apr 2021 08:52:35: 38000000 INFO @ Sat, 03 Apr 2021 08:52:35: 38000000 INFO @ Sat, 03 Apr 2021 08:52:38: 28000000 INFO @ Sat, 03 Apr 2021 08:52:40: 39000000 INFO @ Sat, 03 Apr 2021 08:52:41: 39000000 INFO @ Sat, 03 Apr 2021 08:52:44: 29000000 INFO @ Sat, 03 Apr 2021 08:52:44: 40000000 INFO @ Sat, 03 Apr 2021 08:52:47: 40000000 INFO @ Sat, 03 Apr 2021 08:52:49: 41000000 INFO @ Sat, 03 Apr 2021 08:52:50: 30000000 INFO @ Sat, 03 Apr 2021 08:52:53: 41000000 INFO @ Sat, 03 Apr 2021 08:52:54: 42000000 INFO @ Sat, 03 Apr 2021 08:52:56: 31000000 INFO @ Sat, 03 Apr 2021 08:52:58: 43000000 INFO @ Sat, 03 Apr 2021 08:52:59: 42000000 INFO @ Sat, 03 Apr 2021 08:53:02: 32000000 INFO @ Sat, 03 Apr 2021 08:53:03: 44000000 INFO @ Sat, 03 Apr 2021 08:53:04: 43000000 INFO @ Sat, 03 Apr 2021 08:53:07: 45000000 INFO @ Sat, 03 Apr 2021 08:53:08: 33000000 INFO @ Sat, 03 Apr 2021 08:53:10: 44000000 INFO @ Sat, 03 Apr 2021 08:53:12: 46000000 INFO @ Sat, 03 Apr 2021 08:53:14: 34000000 INFO @ Sat, 03 Apr 2021 08:53:16: 47000000 INFO @ Sat, 03 Apr 2021 08:53:16: 45000000 INFO @ Sat, 03 Apr 2021 08:53:20: 35000000 INFO @ Sat, 03 Apr 2021 08:53:21: 48000000 INFO @ Sat, 03 Apr 2021 08:53:22: 46000000 INFO @ Sat, 03 Apr 2021 08:53:25: 49000000 INFO @ Sat, 03 Apr 2021 08:53:26: 36000000 INFO @ Sat, 03 Apr 2021 08:53:28: 47000000 INFO @ Sat, 03 Apr 2021 08:53:30: 50000000 INFO @ Sat, 03 Apr 2021 08:53:32: 37000000 INFO @ Sat, 03 Apr 2021 08:53:34: 48000000 INFO @ Sat, 03 Apr 2021 08:53:35: 51000000 INFO @ Sat, 03 Apr 2021 08:53:38: 38000000 INFO @ Sat, 03 Apr 2021 08:53:39: 52000000 INFO @ Sat, 03 Apr 2021 08:53:40: 49000000 INFO @ Sat, 03 Apr 2021 08:53:44: 39000000 INFO @ Sat, 03 Apr 2021 08:53:44: 53000000 INFO @ Sat, 03 Apr 2021 08:53:46: 50000000 INFO @ Sat, 03 Apr 2021 08:53:49: 54000000 INFO @ Sat, 03 Apr 2021 08:53:50: 40000000 INFO @ Sat, 03 Apr 2021 08:53:52: 51000000 INFO @ Sat, 03 Apr 2021 08:53:53: 55000000 INFO @ Sat, 03 Apr 2021 08:53:56: 41000000 INFO @ Sat, 03 Apr 2021 08:53:58: 56000000 INFO @ Sat, 03 Apr 2021 08:53:59: 52000000 INFO @ Sat, 03 Apr 2021 08:54:02: 42000000 INFO @ Sat, 03 Apr 2021 08:54:03: 57000000 INFO @ Sat, 03 Apr 2021 08:54:05: 53000000 INFO @ Sat, 03 Apr 2021 08:54:07: 58000000 INFO @ Sat, 03 Apr 2021 08:54:08: 43000000 INFO @ Sat, 03 Apr 2021 08:54:11: 54000000 INFO @ Sat, 03 Apr 2021 08:54:12: 59000000 INFO @ Sat, 03 Apr 2021 08:54:14: 44000000 INFO @ Sat, 03 Apr 2021 08:54:17: 60000000 INFO @ Sat, 03 Apr 2021 08:54:17: 55000000 INFO @ Sat, 03 Apr 2021 08:54:20: 45000000 INFO @ Sat, 03 Apr 2021 08:54:21: 61000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:54:23: 56000000 INFO @ Sat, 03 Apr 2021 08:54:26: 46000000 INFO @ Sat, 03 Apr 2021 08:54:26: 62000000 INFO @ Sat, 03 Apr 2021 08:54:29: 57000000 INFO @ Sat, 03 Apr 2021 08:54:30: 63000000 INFO @ Sat, 03 Apr 2021 08:54:31: 47000000 INFO @ Sat, 03 Apr 2021 08:54:35: 64000000 INFO @ Sat, 03 Apr 2021 08:54:35: 58000000 INFO @ Sat, 03 Apr 2021 08:54:38: 48000000 INFO @ Sat, 03 Apr 2021 08:54:40: 65000000 INFO @ Sat, 03 Apr 2021 08:54:41: 59000000 INFO @ Sat, 03 Apr 2021 08:54:44: 49000000 INFO @ Sat, 03 Apr 2021 08:54:44: 66000000 INFO @ Sat, 03 Apr 2021 08:54:47: 60000000 INFO @ Sat, 03 Apr 2021 08:54:49: 67000000 INFO @ Sat, 03 Apr 2021 08:54:50: 50000000 INFO @ Sat, 03 Apr 2021 08:54:53: 61000000 INFO @ Sat, 03 Apr 2021 08:54:54: 68000000 INFO @ Sat, 03 Apr 2021 08:54:56: 51000000 INFO @ Sat, 03 Apr 2021 08:54:58: 69000000 INFO @ Sat, 03 Apr 2021 08:54:59: 62000000 INFO @ Sat, 03 Apr 2021 08:55:02: 52000000 INFO @ Sat, 03 Apr 2021 08:55:03: 70000000 INFO @ Sat, 03 Apr 2021 08:55:05: 63000000 INFO @ Sat, 03 Apr 2021 08:55:07: 71000000 INFO @ Sat, 03 Apr 2021 08:55:08: 53000000 INFO @ Sat, 03 Apr 2021 08:55:11: 72000000 INFO @ Sat, 03 Apr 2021 08:55:11: 64000000 INFO @ Sat, 03 Apr 2021 08:55:14: 54000000 INFO @ Sat, 03 Apr 2021 08:55:15: 73000000 INFO @ Sat, 03 Apr 2021 08:55:17: 65000000 INFO @ Sat, 03 Apr 2021 08:55:19: 74000000 INFO @ Sat, 03 Apr 2021 08:55:20: 55000000 INFO @ Sat, 03 Apr 2021 08:55:23: 66000000 INFO @ Sat, 03 Apr 2021 08:55:23: 75000000 INFO @ Sat, 03 Apr 2021 08:55:26: 56000000 INFO @ Sat, 03 Apr 2021 08:55:27: #1 tag size is determined as 33 bps INFO @ Sat, 03 Apr 2021 08:55:27: #1 tag size = 33 INFO @ Sat, 03 Apr 2021 08:55:27: #1 total tags in treatment: 32345406 INFO @ Sat, 03 Apr 2021 08:55:27: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:55:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:55:28: #1 tags after filtering in treatment: 18023533 INFO @ Sat, 03 Apr 2021 08:55:28: #1 Redundant rate of treatment: 0.44 INFO @ Sat, 03 Apr 2021 08:55:28: #1 finished! INFO @ Sat, 03 Apr 2021 08:55:28: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:55:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:55:29: 67000000 INFO @ Sat, 03 Apr 2021 08:55:29: #2 number of paired peaks: 252 WARNING @ Sat, 03 Apr 2021 08:55:29: Fewer paired peaks (252) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 252 pairs to build model! INFO @ Sat, 03 Apr 2021 08:55:29: start model_add_line... INFO @ Sat, 03 Apr 2021 08:55:29: start X-correlation... INFO @ Sat, 03 Apr 2021 08:55:29: end of X-cor INFO @ Sat, 03 Apr 2021 08:55:29: #2 finished! INFO @ Sat, 03 Apr 2021 08:55:29: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 08:55:29: #2 alternative fragment length(s) may be 102 bps INFO @ Sat, 03 Apr 2021 08:55:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.10_model.r INFO @ Sat, 03 Apr 2021 08:55:29: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:55:29: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:55:32: 57000000 INFO @ Sat, 03 Apr 2021 08:55:35: 68000000 INFO @ Sat, 03 Apr 2021 08:55:38: 58000000 INFO @ Sat, 03 Apr 2021 08:55:40: 69000000 INFO @ Sat, 03 Apr 2021 08:55:44: 59000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:55:46: 70000000 INFO @ Sat, 03 Apr 2021 08:55:50: 60000000 INFO @ Sat, 03 Apr 2021 08:55:51: 71000000 INFO @ Sat, 03 Apr 2021 08:55:56: 61000000 INFO @ Sat, 03 Apr 2021 08:55:57: 72000000 INFO @ Sat, 03 Apr 2021 08:56:02: 62000000 INFO @ Sat, 03 Apr 2021 08:56:02: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:56:02: 73000000 INFO @ Sat, 03 Apr 2021 08:56:08: 74000000 INFO @ Sat, 03 Apr 2021 08:56:08: 63000000 INFO @ Sat, 03 Apr 2021 08:56:13: 75000000 INFO @ Sat, 03 Apr 2021 08:56:14: 64000000 INFO @ Sat, 03 Apr 2021 08:56:17: #1 tag size is determined as 33 bps INFO @ Sat, 03 Apr 2021 08:56:17: #1 tag size = 33 INFO @ Sat, 03 Apr 2021 08:56:17: #1 total tags in treatment: 32345406 INFO @ Sat, 03 Apr 2021 08:56:17: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:56:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:56:18: #1 tags after filtering in treatment: 18023533 INFO @ Sat, 03 Apr 2021 08:56:18: #1 Redundant rate of treatment: 0.44 INFO @ Sat, 03 Apr 2021 08:56:18: #1 finished! INFO @ Sat, 03 Apr 2021 08:56:18: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:56:18: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:56:19: #2 number of paired peaks: 252 WARNING @ Sat, 03 Apr 2021 08:56:19: Fewer paired peaks (252) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 252 pairs to build model! INFO @ Sat, 03 Apr 2021 08:56:19: start model_add_line... INFO @ Sat, 03 Apr 2021 08:56:19: start X-correlation... INFO @ Sat, 03 Apr 2021 08:56:19: end of X-cor INFO @ Sat, 03 Apr 2021 08:56:19: #2 finished! INFO @ Sat, 03 Apr 2021 08:56:19: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 08:56:19: #2 alternative fragment length(s) may be 102 bps INFO @ Sat, 03 Apr 2021 08:56:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.05_model.r INFO @ Sat, 03 Apr 2021 08:56:19: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:56:19: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:56:19: 65000000 INFO @ Sat, 03 Apr 2021 08:56:19: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:56:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:56:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.10_summits.bed INFO @ Sat, 03 Apr 2021 08:56:20: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (7334 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:56:24: 66000000 INFO @ Sat, 03 Apr 2021 08:56:29: 67000000 INFO @ Sat, 03 Apr 2021 08:56:34: 68000000 INFO @ Sat, 03 Apr 2021 08:56:40: 69000000 INFO @ Sat, 03 Apr 2021 08:56:44: 70000000 INFO @ Sat, 03 Apr 2021 08:56:49: 71000000 INFO @ Sat, 03 Apr 2021 08:56:53: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:56:54: 72000000 INFO @ Sat, 03 Apr 2021 08:56:58: 73000000 INFO @ Sat, 03 Apr 2021 08:57:03: 74000000 INFO @ Sat, 03 Apr 2021 08:57:08: 75000000 INFO @ Sat, 03 Apr 2021 08:57:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:57:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:57:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.05_summits.bed INFO @ Sat, 03 Apr 2021 08:57:11: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (12077 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:57:12: #1 tag size is determined as 33 bps INFO @ Sat, 03 Apr 2021 08:57:12: #1 tag size = 33 INFO @ Sat, 03 Apr 2021 08:57:12: #1 total tags in treatment: 32345406 INFO @ Sat, 03 Apr 2021 08:57:12: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:57:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:57:12: #1 tags after filtering in treatment: 18023533 INFO @ Sat, 03 Apr 2021 08:57:12: #1 Redundant rate of treatment: 0.44 INFO @ Sat, 03 Apr 2021 08:57:12: #1 finished! INFO @ Sat, 03 Apr 2021 08:57:12: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:57:12: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:57:14: #2 number of paired peaks: 252 WARNING @ Sat, 03 Apr 2021 08:57:14: Fewer paired peaks (252) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 252 pairs to build model! INFO @ Sat, 03 Apr 2021 08:57:14: start model_add_line... INFO @ Sat, 03 Apr 2021 08:57:14: start X-correlation... INFO @ Sat, 03 Apr 2021 08:57:14: end of X-cor INFO @ Sat, 03 Apr 2021 08:57:14: #2 finished! INFO @ Sat, 03 Apr 2021 08:57:14: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 08:57:14: #2 alternative fragment length(s) may be 102 bps INFO @ Sat, 03 Apr 2021 08:57:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.20_model.r INFO @ Sat, 03 Apr 2021 08:57:14: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:57:14: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:57:47: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:58:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:58:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:58:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082391/SRX4082391.20_summits.bed INFO @ Sat, 03 Apr 2021 08:58:04: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (3342 records, 4 fields): 5 millis CompletedMACS2peakCalling