Job ID = 12265430 SRX = SRX4082385 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:27:31 37414145 reads; of these: 37414145 (100.00%) were paired; of these: 3979032 (10.64%) aligned concordantly 0 times 30131986 (80.54%) aligned concordantly exactly 1 time 3303127 (8.83%) aligned concordantly >1 times ---- 3979032 pairs aligned concordantly 0 times; of these: 2487805 (62.52%) aligned discordantly 1 time ---- 1491227 pairs aligned 0 times concordantly or discordantly; of these: 2982454 mates make up the pairs; of these: 1733837 (58.13%) aligned 0 times 687801 (23.06%) aligned exactly 1 time 560816 (18.80%) aligned >1 times 97.68% overall alignment rate Time searching: 00:27:31 Overall time: 00:27:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 9741819 / 32046857 = 0.3040 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:44:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:44:41: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:44:41: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:44:46: 1000000 INFO @ Sat, 03 Apr 2021 07:44:51: 2000000 INFO @ Sat, 03 Apr 2021 07:44:56: 3000000 INFO @ Sat, 03 Apr 2021 07:45:01: 4000000 INFO @ Sat, 03 Apr 2021 07:45:06: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:45:10: 6000000 INFO @ Sat, 03 Apr 2021 07:45:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:45:11: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:45:11: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:45:16: 7000000 INFO @ Sat, 03 Apr 2021 07:45:17: 1000000 INFO @ Sat, 03 Apr 2021 07:45:21: 8000000 INFO @ Sat, 03 Apr 2021 07:45:23: 2000000 INFO @ Sat, 03 Apr 2021 07:45:27: 9000000 INFO @ Sat, 03 Apr 2021 07:45:30: 3000000 INFO @ Sat, 03 Apr 2021 07:45:32: 10000000 INFO @ Sat, 03 Apr 2021 07:45:36: 4000000 INFO @ Sat, 03 Apr 2021 07:45:38: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:45:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:45:41: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:45:41: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:45:42: 5000000 INFO @ Sat, 03 Apr 2021 07:45:43: 12000000 INFO @ Sat, 03 Apr 2021 07:45:47: 1000000 INFO @ Sat, 03 Apr 2021 07:45:48: 6000000 INFO @ Sat, 03 Apr 2021 07:45:49: 13000000 INFO @ Sat, 03 Apr 2021 07:45:52: 2000000 INFO @ Sat, 03 Apr 2021 07:45:54: 7000000 INFO @ Sat, 03 Apr 2021 07:45:55: 14000000 INFO @ Sat, 03 Apr 2021 07:45:58: 3000000 INFO @ Sat, 03 Apr 2021 07:46:00: 8000000 INFO @ Sat, 03 Apr 2021 07:46:00: 15000000 INFO @ Sat, 03 Apr 2021 07:46:04: 4000000 INFO @ Sat, 03 Apr 2021 07:46:06: 16000000 INFO @ Sat, 03 Apr 2021 07:46:06: 9000000 INFO @ Sat, 03 Apr 2021 07:46:09: 5000000 INFO @ Sat, 03 Apr 2021 07:46:11: 17000000 INFO @ Sat, 03 Apr 2021 07:46:12: 10000000 INFO @ Sat, 03 Apr 2021 07:46:15: 6000000 INFO @ Sat, 03 Apr 2021 07:46:17: 18000000 INFO @ Sat, 03 Apr 2021 07:46:19: 11000000 INFO @ Sat, 03 Apr 2021 07:46:20: 7000000 INFO @ Sat, 03 Apr 2021 07:46:23: 19000000 INFO @ Sat, 03 Apr 2021 07:46:25: 12000000 INFO @ Sat, 03 Apr 2021 07:46:26: 8000000 INFO @ Sat, 03 Apr 2021 07:46:28: 20000000 INFO @ Sat, 03 Apr 2021 07:46:31: 13000000 INFO @ Sat, 03 Apr 2021 07:46:32: 9000000 INFO @ Sat, 03 Apr 2021 07:46:34: 21000000 INFO @ Sat, 03 Apr 2021 07:46:37: 14000000 INFO @ Sat, 03 Apr 2021 07:46:37: 10000000 INFO @ Sat, 03 Apr 2021 07:46:40: 22000000 INFO @ Sat, 03 Apr 2021 07:46:43: 15000000 INFO @ Sat, 03 Apr 2021 07:46:43: 11000000 INFO @ Sat, 03 Apr 2021 07:46:45: 23000000 INFO @ Sat, 03 Apr 2021 07:46:49: 12000000 INFO @ Sat, 03 Apr 2021 07:46:49: 16000000 INFO @ Sat, 03 Apr 2021 07:46:51: 24000000 INFO @ Sat, 03 Apr 2021 07:46:54: 13000000 INFO @ Sat, 03 Apr 2021 07:46:55: 17000000 INFO @ Sat, 03 Apr 2021 07:46:56: 25000000 INFO @ Sat, 03 Apr 2021 07:47:00: 14000000 INFO @ Sat, 03 Apr 2021 07:47:01: 18000000 INFO @ Sat, 03 Apr 2021 07:47:02: 26000000 INFO @ Sat, 03 Apr 2021 07:47:05: 15000000 INFO @ Sat, 03 Apr 2021 07:47:07: 19000000 INFO @ Sat, 03 Apr 2021 07:47:08: 27000000 INFO @ Sat, 03 Apr 2021 07:47:11: 16000000 INFO @ Sat, 03 Apr 2021 07:47:13: 20000000 INFO @ Sat, 03 Apr 2021 07:47:13: 28000000 INFO @ Sat, 03 Apr 2021 07:47:17: 17000000 INFO @ Sat, 03 Apr 2021 07:47:19: 29000000 INFO @ Sat, 03 Apr 2021 07:47:19: 21000000 INFO @ Sat, 03 Apr 2021 07:47:22: 18000000 INFO @ Sat, 03 Apr 2021 07:47:25: 30000000 INFO @ Sat, 03 Apr 2021 07:47:25: 22000000 INFO @ Sat, 03 Apr 2021 07:47:28: 19000000 INFO @ Sat, 03 Apr 2021 07:47:30: 31000000 INFO @ Sat, 03 Apr 2021 07:47:31: 23000000 INFO @ Sat, 03 Apr 2021 07:47:33: 20000000 INFO @ Sat, 03 Apr 2021 07:47:36: 32000000 INFO @ Sat, 03 Apr 2021 07:47:37: 24000000 INFO @ Sat, 03 Apr 2021 07:47:39: 21000000 INFO @ Sat, 03 Apr 2021 07:47:41: 33000000 INFO @ Sat, 03 Apr 2021 07:47:44: 25000000 INFO @ Sat, 03 Apr 2021 07:47:45: 22000000 INFO @ Sat, 03 Apr 2021 07:47:47: 34000000 INFO @ Sat, 03 Apr 2021 07:47:50: 26000000 INFO @ Sat, 03 Apr 2021 07:47:50: 23000000 INFO @ Sat, 03 Apr 2021 07:47:53: 35000000 INFO @ Sat, 03 Apr 2021 07:47:56: 27000000 INFO @ Sat, 03 Apr 2021 07:47:56: 24000000 INFO @ Sat, 03 Apr 2021 07:47:58: 36000000 INFO @ Sat, 03 Apr 2021 07:48:01: 25000000 INFO @ Sat, 03 Apr 2021 07:48:02: 28000000 INFO @ Sat, 03 Apr 2021 07:48:04: 37000000 INFO @ Sat, 03 Apr 2021 07:48:07: 26000000 INFO @ Sat, 03 Apr 2021 07:48:08: 29000000 INFO @ Sat, 03 Apr 2021 07:48:10: 38000000 INFO @ Sat, 03 Apr 2021 07:48:13: 27000000 INFO @ Sat, 03 Apr 2021 07:48:14: 30000000 INFO @ Sat, 03 Apr 2021 07:48:15: 39000000 INFO @ Sat, 03 Apr 2021 07:48:18: 28000000 INFO @ Sat, 03 Apr 2021 07:48:20: 31000000 INFO @ Sat, 03 Apr 2021 07:48:21: 40000000 INFO @ Sat, 03 Apr 2021 07:48:24: 29000000 INFO @ Sat, 03 Apr 2021 07:48:26: 32000000 INFO @ Sat, 03 Apr 2021 07:48:27: 41000000 INFO @ Sat, 03 Apr 2021 07:48:29: 30000000 INFO @ Sat, 03 Apr 2021 07:48:32: 33000000 INFO @ Sat, 03 Apr 2021 07:48:32: 42000000 INFO @ Sat, 03 Apr 2021 07:48:35: 31000000 INFO @ Sat, 03 Apr 2021 07:48:38: 43000000 INFO @ Sat, 03 Apr 2021 07:48:38: 34000000 INFO @ Sat, 03 Apr 2021 07:48:41: 32000000 INFO @ Sat, 03 Apr 2021 07:48:43: 44000000 INFO @ Sat, 03 Apr 2021 07:48:44: 35000000 INFO @ Sat, 03 Apr 2021 07:48:46: 33000000 INFO @ Sat, 03 Apr 2021 07:48:49: 45000000 INFO @ Sat, 03 Apr 2021 07:48:50: 36000000 INFO @ Sat, 03 Apr 2021 07:48:52: 34000000 INFO @ Sat, 03 Apr 2021 07:48:54: 46000000 INFO @ Sat, 03 Apr 2021 07:48:56: 37000000 INFO @ Sat, 03 Apr 2021 07:48:58: 35000000 INFO @ Sat, 03 Apr 2021 07:49:00: 47000000 INFO @ Sat, 03 Apr 2021 07:49:02: 38000000 INFO @ Sat, 03 Apr 2021 07:49:03: 36000000 INFO @ Sat, 03 Apr 2021 07:49:05: 48000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:49:08: 39000000 INFO @ Sat, 03 Apr 2021 07:49:09: 37000000 INFO @ Sat, 03 Apr 2021 07:49:11: 49000000 INFO @ Sat, 03 Apr 2021 07:49:14: 38000000 INFO @ Sat, 03 Apr 2021 07:49:14: 40000000 INFO @ Sat, 03 Apr 2021 07:49:16: 50000000 INFO @ Sat, 03 Apr 2021 07:49:20: 39000000 INFO @ Sat, 03 Apr 2021 07:49:20: 41000000 INFO @ Sat, 03 Apr 2021 07:49:22: 51000000 INFO @ Sat, 03 Apr 2021 07:49:25: 40000000 INFO @ Sat, 03 Apr 2021 07:49:26: 42000000 INFO @ Sat, 03 Apr 2021 07:49:27: 52000000 INFO @ Sat, 03 Apr 2021 07:49:31: 41000000 INFO @ Sat, 03 Apr 2021 07:49:32: 53000000 INFO @ Sat, 03 Apr 2021 07:49:33: 43000000 INFO @ Sat, 03 Apr 2021 07:49:36: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:49:36: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:49:36: #1 total tags in treatment: 23853355 INFO @ Sat, 03 Apr 2021 07:49:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:49:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:49:36: #1 tags after filtering in treatment: 14171227 INFO @ Sat, 03 Apr 2021 07:49:36: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:49:36: #1 finished! INFO @ Sat, 03 Apr 2021 07:49:36: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:49:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:49:36: 42000000 INFO @ Sat, 03 Apr 2021 07:49:37: #2 number of paired peaks: 418 WARNING @ Sat, 03 Apr 2021 07:49:37: Fewer paired peaks (418) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 418 pairs to build model! INFO @ Sat, 03 Apr 2021 07:49:37: start model_add_line... INFO @ Sat, 03 Apr 2021 07:49:37: start X-correlation... INFO @ Sat, 03 Apr 2021 07:49:37: end of X-cor INFO @ Sat, 03 Apr 2021 07:49:37: #2 finished! INFO @ Sat, 03 Apr 2021 07:49:37: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 07:49:37: #2 alternative fragment length(s) may be 79 bps INFO @ Sat, 03 Apr 2021 07:49:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.05_model.r WARNING @ Sat, 03 Apr 2021 07:49:37: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:49:37: #2 You may need to consider one of the other alternative d(s): 79 WARNING @ Sat, 03 Apr 2021 07:49:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:49:37: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:49:37: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:49:39: 44000000 INFO @ Sat, 03 Apr 2021 07:49:42: 43000000 INFO @ Sat, 03 Apr 2021 07:49:45: 45000000 INFO @ Sat, 03 Apr 2021 07:49:47: 44000000 INFO @ Sat, 03 Apr 2021 07:49:51: 46000000 INFO @ Sat, 03 Apr 2021 07:49:53: 45000000 INFO @ Sat, 03 Apr 2021 07:49:57: 47000000 INFO @ Sat, 03 Apr 2021 07:49:58: 46000000 INFO @ Sat, 03 Apr 2021 07:50:03: 48000000 INFO @ Sat, 03 Apr 2021 07:50:04: 47000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:50:09: 49000000 INFO @ Sat, 03 Apr 2021 07:50:09: 48000000 INFO @ Sat, 03 Apr 2021 07:50:09: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:50:15: 49000000 INFO @ Sat, 03 Apr 2021 07:50:15: 50000000 INFO @ Sat, 03 Apr 2021 07:50:20: 50000000 INFO @ Sat, 03 Apr 2021 07:50:20: 51000000 INFO @ Sat, 03 Apr 2021 07:50:25: 51000000 INFO @ Sat, 03 Apr 2021 07:50:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:50:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:50:26: 52000000 INFO @ Sat, 03 Apr 2021 07:50:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.05_summits.bed INFO @ Sat, 03 Apr 2021 07:50:26: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (9761 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:50:30: 52000000 INFO @ Sat, 03 Apr 2021 07:50:32: 53000000 INFO @ Sat, 03 Apr 2021 07:50:36: 53000000 INFO @ Sat, 03 Apr 2021 07:50:36: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:50:36: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:50:36: #1 total tags in treatment: 23853355 INFO @ Sat, 03 Apr 2021 07:50:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:50:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:50:36: #1 tags after filtering in treatment: 14171227 INFO @ Sat, 03 Apr 2021 07:50:36: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:50:36: #1 finished! INFO @ Sat, 03 Apr 2021 07:50:36: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:50:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:50:37: #2 number of paired peaks: 418 WARNING @ Sat, 03 Apr 2021 07:50:37: Fewer paired peaks (418) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 418 pairs to build model! INFO @ Sat, 03 Apr 2021 07:50:37: start model_add_line... INFO @ Sat, 03 Apr 2021 07:50:37: start X-correlation... INFO @ Sat, 03 Apr 2021 07:50:37: end of X-cor INFO @ Sat, 03 Apr 2021 07:50:37: #2 finished! INFO @ Sat, 03 Apr 2021 07:50:37: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 07:50:37: #2 alternative fragment length(s) may be 79 bps INFO @ Sat, 03 Apr 2021 07:50:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.10_model.r WARNING @ Sat, 03 Apr 2021 07:50:37: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:50:37: #2 You may need to consider one of the other alternative d(s): 79 WARNING @ Sat, 03 Apr 2021 07:50:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:50:37: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:50:37: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:50:39: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 07:50:39: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 07:50:39: #1 total tags in treatment: 23853355 INFO @ Sat, 03 Apr 2021 07:50:39: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:50:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:50:39: #1 tags after filtering in treatment: 14171227 INFO @ Sat, 03 Apr 2021 07:50:39: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:50:39: #1 finished! INFO @ Sat, 03 Apr 2021 07:50:39: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:50:39: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:50:40: #2 number of paired peaks: 418 WARNING @ Sat, 03 Apr 2021 07:50:40: Fewer paired peaks (418) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 418 pairs to build model! INFO @ Sat, 03 Apr 2021 07:50:40: start model_add_line... INFO @ Sat, 03 Apr 2021 07:50:40: start X-correlation... INFO @ Sat, 03 Apr 2021 07:50:40: end of X-cor INFO @ Sat, 03 Apr 2021 07:50:40: #2 finished! INFO @ Sat, 03 Apr 2021 07:50:40: #2 predicted fragment length is 79 bps INFO @ Sat, 03 Apr 2021 07:50:40: #2 alternative fragment length(s) may be 79 bps INFO @ Sat, 03 Apr 2021 07:50:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.20_model.r WARNING @ Sat, 03 Apr 2021 07:50:40: #2 Since the d (79) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:50:40: #2 You may need to consider one of the other alternative d(s): 79 WARNING @ Sat, 03 Apr 2021 07:50:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:50:40: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:50:40: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:51:09: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:51:11: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:51:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:51:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:51:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.10_summits.bed INFO @ Sat, 03 Apr 2021 07:51:26: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (5966 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:51:27: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:51:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:51:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082385/SRX4082385.20_summits.bed INFO @ Sat, 03 Apr 2021 07:51:27: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2754 records, 4 fields): 4 millis CompletedMACS2peakCalling