Job ID = 12265479 SRX = SRX4082382 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:39:13 58415047 reads; of these: 58415047 (100.00%) were paired; of these: 2306381 (3.95%) aligned concordantly 0 times 50586410 (86.60%) aligned concordantly exactly 1 time 5522256 (9.45%) aligned concordantly >1 times ---- 2306381 pairs aligned concordantly 0 times; of these: 802620 (34.80%) aligned discordantly 1 time ---- 1503761 pairs aligned 0 times concordantly or discordantly; of these: 3007522 mates make up the pairs; of these: 1896529 (63.06%) aligned 0 times 738228 (24.55%) aligned exactly 1 time 372765 (12.39%) aligned >1 times 98.38% overall alignment rate Time searching: 00:39:14 Overall time: 00:39:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 27811109 / 56891632 = 0.4888 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:16:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:16:27: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:16:27: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:16:33: 1000000 INFO @ Sat, 03 Apr 2021 08:16:38: 2000000 INFO @ Sat, 03 Apr 2021 08:16:44: 3000000 INFO @ Sat, 03 Apr 2021 08:16:49: 4000000 INFO @ Sat, 03 Apr 2021 08:16:54: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:16:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:16:57: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:16:57: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:17:00: 6000000 INFO @ Sat, 03 Apr 2021 08:17:03: 1000000 INFO @ Sat, 03 Apr 2021 08:17:05: 7000000 INFO @ Sat, 03 Apr 2021 08:17:08: 2000000 INFO @ Sat, 03 Apr 2021 08:17:11: 8000000 INFO @ Sat, 03 Apr 2021 08:17:14: 3000000 INFO @ Sat, 03 Apr 2021 08:17:16: 9000000 INFO @ Sat, 03 Apr 2021 08:17:19: 4000000 INFO @ Sat, 03 Apr 2021 08:17:22: 10000000 INFO @ Sat, 03 Apr 2021 08:17:25: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:17:27: 11000000 INFO @ Sat, 03 Apr 2021 08:17:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:17:27: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:17:27: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:17:30: 6000000 INFO @ Sat, 03 Apr 2021 08:17:33: 12000000 INFO @ Sat, 03 Apr 2021 08:17:33: 1000000 INFO @ Sat, 03 Apr 2021 08:17:36: 7000000 INFO @ Sat, 03 Apr 2021 08:17:38: 13000000 INFO @ Sat, 03 Apr 2021 08:17:38: 2000000 INFO @ Sat, 03 Apr 2021 08:17:41: 8000000 INFO @ Sat, 03 Apr 2021 08:17:43: 14000000 INFO @ Sat, 03 Apr 2021 08:17:44: 3000000 INFO @ Sat, 03 Apr 2021 08:17:47: 9000000 INFO @ Sat, 03 Apr 2021 08:17:49: 15000000 INFO @ Sat, 03 Apr 2021 08:17:50: 4000000 INFO @ Sat, 03 Apr 2021 08:17:52: 10000000 INFO @ Sat, 03 Apr 2021 08:17:54: 16000000 INFO @ Sat, 03 Apr 2021 08:17:55: 5000000 INFO @ Sat, 03 Apr 2021 08:17:58: 11000000 INFO @ Sat, 03 Apr 2021 08:18:00: 17000000 INFO @ Sat, 03 Apr 2021 08:18:01: 6000000 INFO @ Sat, 03 Apr 2021 08:18:03: 12000000 INFO @ Sat, 03 Apr 2021 08:18:05: 18000000 INFO @ Sat, 03 Apr 2021 08:18:06: 7000000 INFO @ Sat, 03 Apr 2021 08:18:09: 13000000 INFO @ Sat, 03 Apr 2021 08:18:11: 19000000 INFO @ Sat, 03 Apr 2021 08:18:12: 8000000 INFO @ Sat, 03 Apr 2021 08:18:14: 14000000 INFO @ Sat, 03 Apr 2021 08:18:17: 20000000 INFO @ Sat, 03 Apr 2021 08:18:18: 9000000 INFO @ Sat, 03 Apr 2021 08:18:20: 15000000 INFO @ Sat, 03 Apr 2021 08:18:22: 21000000 INFO @ Sat, 03 Apr 2021 08:18:23: 10000000 INFO @ Sat, 03 Apr 2021 08:18:25: 16000000 INFO @ Sat, 03 Apr 2021 08:18:28: 22000000 INFO @ Sat, 03 Apr 2021 08:18:29: 11000000 INFO @ Sat, 03 Apr 2021 08:18:30: 17000000 INFO @ Sat, 03 Apr 2021 08:18:33: 23000000 INFO @ Sat, 03 Apr 2021 08:18:34: 12000000 INFO @ Sat, 03 Apr 2021 08:18:36: 18000000 INFO @ Sat, 03 Apr 2021 08:18:39: 24000000 INFO @ Sat, 03 Apr 2021 08:18:40: 13000000 INFO @ Sat, 03 Apr 2021 08:18:42: 19000000 INFO @ Sat, 03 Apr 2021 08:18:44: 25000000 INFO @ Sat, 03 Apr 2021 08:18:45: 14000000 INFO @ Sat, 03 Apr 2021 08:18:47: 20000000 INFO @ Sat, 03 Apr 2021 08:18:49: 26000000 INFO @ Sat, 03 Apr 2021 08:18:51: 15000000 INFO @ Sat, 03 Apr 2021 08:18:53: 21000000 INFO @ Sat, 03 Apr 2021 08:18:55: 27000000 INFO @ Sat, 03 Apr 2021 08:18:56: 16000000 INFO @ Sat, 03 Apr 2021 08:18:58: 22000000 INFO @ Sat, 03 Apr 2021 08:19:00: 28000000 INFO @ Sat, 03 Apr 2021 08:19:02: 17000000 INFO @ Sat, 03 Apr 2021 08:19:04: 23000000 INFO @ Sat, 03 Apr 2021 08:19:06: 29000000 INFO @ Sat, 03 Apr 2021 08:19:07: 18000000 INFO @ Sat, 03 Apr 2021 08:19:09: 24000000 INFO @ Sat, 03 Apr 2021 08:19:11: 30000000 INFO @ Sat, 03 Apr 2021 08:19:13: 19000000 INFO @ Sat, 03 Apr 2021 08:19:15: 25000000 INFO @ Sat, 03 Apr 2021 08:19:17: 31000000 INFO @ Sat, 03 Apr 2021 08:19:18: 20000000 INFO @ Sat, 03 Apr 2021 08:19:21: 26000000 INFO @ Sat, 03 Apr 2021 08:19:22: 32000000 INFO @ Sat, 03 Apr 2021 08:19:24: 21000000 INFO @ Sat, 03 Apr 2021 08:19:27: 27000000 INFO @ Sat, 03 Apr 2021 08:19:28: 33000000 INFO @ Sat, 03 Apr 2021 08:19:30: 22000000 INFO @ Sat, 03 Apr 2021 08:19:32: 28000000 INFO @ Sat, 03 Apr 2021 08:19:34: 34000000 INFO @ Sat, 03 Apr 2021 08:19:35: 23000000 INFO @ Sat, 03 Apr 2021 08:19:38: 29000000 INFO @ Sat, 03 Apr 2021 08:19:39: 35000000 INFO @ Sat, 03 Apr 2021 08:19:41: 24000000 INFO @ Sat, 03 Apr 2021 08:19:44: 30000000 INFO @ Sat, 03 Apr 2021 08:19:45: 36000000 INFO @ Sat, 03 Apr 2021 08:19:46: 25000000 INFO @ Sat, 03 Apr 2021 08:19:50: 31000000 INFO @ Sat, 03 Apr 2021 08:19:51: 37000000 INFO @ Sat, 03 Apr 2021 08:19:52: 26000000 INFO @ Sat, 03 Apr 2021 08:19:56: 32000000 INFO @ Sat, 03 Apr 2021 08:19:57: 38000000 INFO @ Sat, 03 Apr 2021 08:19:58: 27000000 INFO @ Sat, 03 Apr 2021 08:20:02: 33000000 INFO @ Sat, 03 Apr 2021 08:20:03: 39000000 INFO @ Sat, 03 Apr 2021 08:20:03: 28000000 INFO @ Sat, 03 Apr 2021 08:20:08: 34000000 INFO @ Sat, 03 Apr 2021 08:20:08: 40000000 INFO @ Sat, 03 Apr 2021 08:20:09: 29000000 INFO @ Sat, 03 Apr 2021 08:20:14: 35000000 INFO @ Sat, 03 Apr 2021 08:20:14: 41000000 INFO @ Sat, 03 Apr 2021 08:20:15: 30000000 INFO @ Sat, 03 Apr 2021 08:20:20: 36000000 INFO @ Sat, 03 Apr 2021 08:20:20: 42000000 INFO @ Sat, 03 Apr 2021 08:20:21: 31000000 INFO @ Sat, 03 Apr 2021 08:20:26: 43000000 INFO @ Sat, 03 Apr 2021 08:20:26: 37000000 INFO @ Sat, 03 Apr 2021 08:20:26: 32000000 INFO @ Sat, 03 Apr 2021 08:20:31: 44000000 INFO @ Sat, 03 Apr 2021 08:20:31: 38000000 INFO @ Sat, 03 Apr 2021 08:20:32: 33000000 INFO @ Sat, 03 Apr 2021 08:20:37: 45000000 INFO @ Sat, 03 Apr 2021 08:20:37: 39000000 INFO @ Sat, 03 Apr 2021 08:20:38: 34000000 INFO @ Sat, 03 Apr 2021 08:20:43: 40000000 INFO @ Sat, 03 Apr 2021 08:20:43: 46000000 INFO @ Sat, 03 Apr 2021 08:20:44: 35000000 INFO @ Sat, 03 Apr 2021 08:20:48: 41000000 INFO @ Sat, 03 Apr 2021 08:20:49: 47000000 INFO @ Sat, 03 Apr 2021 08:20:50: 36000000 INFO @ Sat, 03 Apr 2021 08:20:54: 42000000 INFO @ Sat, 03 Apr 2021 08:20:55: 48000000 INFO @ Sat, 03 Apr 2021 08:20:56: 37000000 INFO @ Sat, 03 Apr 2021 08:20:59: 43000000 INFO @ Sat, 03 Apr 2021 08:21:01: 49000000 INFO @ Sat, 03 Apr 2021 08:21:02: 38000000 INFO @ Sat, 03 Apr 2021 08:21:05: 44000000 INFO @ Sat, 03 Apr 2021 08:21:06: 50000000 INFO @ Sat, 03 Apr 2021 08:21:07: 39000000 INFO @ Sat, 03 Apr 2021 08:21:11: 45000000 INFO @ Sat, 03 Apr 2021 08:21:12: 51000000 INFO @ Sat, 03 Apr 2021 08:21:13: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:21:16: 46000000 INFO @ Sat, 03 Apr 2021 08:21:18: 52000000 INFO @ Sat, 03 Apr 2021 08:21:19: 41000000 INFO @ Sat, 03 Apr 2021 08:21:22: 47000000 INFO @ Sat, 03 Apr 2021 08:21:24: 53000000 INFO @ Sat, 03 Apr 2021 08:21:25: 42000000 INFO @ Sat, 03 Apr 2021 08:21:28: 48000000 INFO @ Sat, 03 Apr 2021 08:21:29: 54000000 INFO @ Sat, 03 Apr 2021 08:21:30: 43000000 INFO @ Sat, 03 Apr 2021 08:21:34: 49000000 INFO @ Sat, 03 Apr 2021 08:21:35: 55000000 INFO @ Sat, 03 Apr 2021 08:21:36: 44000000 INFO @ Sat, 03 Apr 2021 08:21:39: 50000000 INFO @ Sat, 03 Apr 2021 08:21:40: 56000000 INFO @ Sat, 03 Apr 2021 08:21:42: 45000000 INFO @ Sat, 03 Apr 2021 08:21:45: 51000000 INFO @ Sat, 03 Apr 2021 08:21:46: 57000000 INFO @ Sat, 03 Apr 2021 08:21:47: 46000000 INFO @ Sat, 03 Apr 2021 08:21:51: 52000000 INFO @ Sat, 03 Apr 2021 08:21:51: 58000000 INFO @ Sat, 03 Apr 2021 08:21:53: 47000000 INFO @ Sat, 03 Apr 2021 08:21:56: 53000000 INFO @ Sat, 03 Apr 2021 08:21:57: 59000000 INFO @ Sat, 03 Apr 2021 08:21:59: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 08:21:59: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 08:21:59: #1 total tags in treatment: 28375416 INFO @ Sat, 03 Apr 2021 08:21:59: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:21:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:21:59: 48000000 INFO @ Sat, 03 Apr 2021 08:22:00: #1 tags after filtering in treatment: 16780835 INFO @ Sat, 03 Apr 2021 08:22:00: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 08:22:00: #1 finished! INFO @ Sat, 03 Apr 2021 08:22:00: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:22:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:22:01: #2 number of paired peaks: 297 WARNING @ Sat, 03 Apr 2021 08:22:01: Fewer paired peaks (297) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 297 pairs to build model! INFO @ Sat, 03 Apr 2021 08:22:01: start model_add_line... INFO @ Sat, 03 Apr 2021 08:22:01: start X-correlation... INFO @ Sat, 03 Apr 2021 08:22:01: end of X-cor INFO @ Sat, 03 Apr 2021 08:22:01: #2 finished! INFO @ Sat, 03 Apr 2021 08:22:01: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:22:01: #2 alternative fragment length(s) may be 86,595 bps INFO @ Sat, 03 Apr 2021 08:22:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.05_model.r INFO @ Sat, 03 Apr 2021 08:22:01: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:22:01: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:22:02: 54000000 INFO @ Sat, 03 Apr 2021 08:22:05: 49000000 INFO @ Sat, 03 Apr 2021 08:22:07: 55000000 INFO @ Sat, 03 Apr 2021 08:22:10: 50000000 INFO @ Sat, 03 Apr 2021 08:22:13: 56000000 INFO @ Sat, 03 Apr 2021 08:22:16: 51000000 INFO @ Sat, 03 Apr 2021 08:22:18: 57000000 INFO @ Sat, 03 Apr 2021 08:22:21: 52000000 INFO @ Sat, 03 Apr 2021 08:22:23: 58000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:22:26: 53000000 INFO @ Sat, 03 Apr 2021 08:22:29: 59000000 INFO @ Sat, 03 Apr 2021 08:22:31: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 08:22:31: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 08:22:31: #1 total tags in treatment: 28375416 INFO @ Sat, 03 Apr 2021 08:22:31: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:22:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:22:31: #1 tags after filtering in treatment: 16780835 INFO @ Sat, 03 Apr 2021 08:22:31: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 08:22:31: #1 finished! INFO @ Sat, 03 Apr 2021 08:22:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:22:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:22:31: 54000000 INFO @ Sat, 03 Apr 2021 08:22:33: #2 number of paired peaks: 297 WARNING @ Sat, 03 Apr 2021 08:22:33: Fewer paired peaks (297) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 297 pairs to build model! INFO @ Sat, 03 Apr 2021 08:22:33: start model_add_line... INFO @ Sat, 03 Apr 2021 08:22:33: start X-correlation... INFO @ Sat, 03 Apr 2021 08:22:33: end of X-cor INFO @ Sat, 03 Apr 2021 08:22:33: #2 finished! INFO @ Sat, 03 Apr 2021 08:22:33: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:22:33: #2 alternative fragment length(s) may be 86,595 bps INFO @ Sat, 03 Apr 2021 08:22:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.10_model.r INFO @ Sat, 03 Apr 2021 08:22:33: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:22:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:22:37: 55000000 INFO @ Sat, 03 Apr 2021 08:22:41: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:22:42: 56000000 INFO @ Sat, 03 Apr 2021 08:22:47: 57000000 INFO @ Sat, 03 Apr 2021 08:22:52: 58000000 INFO @ Sat, 03 Apr 2021 08:22:57: 59000000 INFO @ Sat, 03 Apr 2021 08:22:58: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 08:22:58: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 08:22:58: #1 total tags in treatment: 28375416 INFO @ Sat, 03 Apr 2021 08:22:58: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:22:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:22:59: #1 tags after filtering in treatment: 16780835 INFO @ Sat, 03 Apr 2021 08:22:59: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 08:22:59: #1 finished! INFO @ Sat, 03 Apr 2021 08:22:59: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:22:59: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:23:00: #2 number of paired peaks: 297 WARNING @ Sat, 03 Apr 2021 08:23:00: Fewer paired peaks (297) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 297 pairs to build model! INFO @ Sat, 03 Apr 2021 08:23:00: start model_add_line... INFO @ Sat, 03 Apr 2021 08:23:00: start X-correlation... INFO @ Sat, 03 Apr 2021 08:23:00: end of X-cor INFO @ Sat, 03 Apr 2021 08:23:00: #2 finished! INFO @ Sat, 03 Apr 2021 08:23:00: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:23:00: #2 alternative fragment length(s) may be 86,595 bps INFO @ Sat, 03 Apr 2021 08:23:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.20_model.r INFO @ Sat, 03 Apr 2021 08:23:00: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:23:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:23:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:23:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:23:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.05_summits.bed INFO @ Sat, 03 Apr 2021 08:23:02: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (11562 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:23:12: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:23:34: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:23:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:23:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.10_summits.bed INFO @ Sat, 03 Apr 2021 08:23:34: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (7132 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:23:38: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:24:00: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:24:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:24:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX4082382/SRX4082382.20_summits.bed INFO @ Sat, 03 Apr 2021 08:24:00: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3476 records, 4 fields): 6 millis CompletedMACS2peakCalling