Job ID = 6367715 SRX = SRX4012479 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:35:50 prefetch.2.10.7: 1) Downloading 'SRR7082720'... 2020-06-15T23:35:50 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:52:02 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:52:02 prefetch.2.10.7: 1) 'SRR7082720' was downloaded successfully Read 40493711 spots for SRR7082720/SRR7082720.sra Written 40493711 spots for SRR7082720/SRR7082720.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:50:09 40493711 reads; of these: 40493711 (100.00%) were paired; of these: 1524079 (3.76%) aligned concordantly 0 times 33596042 (82.97%) aligned concordantly exactly 1 time 5373590 (13.27%) aligned concordantly >1 times ---- 1524079 pairs aligned concordantly 0 times; of these: 599060 (39.31%) aligned discordantly 1 time ---- 925019 pairs aligned 0 times concordantly or discordantly; of these: 1850038 mates make up the pairs; of these: 780750 (42.20%) aligned 0 times 617205 (33.36%) aligned exactly 1 time 452083 (24.44%) aligned >1 times 99.04% overall alignment rate Time searching: 00:50:10 Overall time: 00:50:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 1599231 / 39091100 = 0.0409 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:17:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:17:51: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:17:51: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:17:59: 1000000 INFO @ Tue, 16 Jun 2020 10:18:07: 2000000 INFO @ Tue, 16 Jun 2020 10:18:14: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:18:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:18:21: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:18:21: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:18:22: 4000000 INFO @ Tue, 16 Jun 2020 10:18:28: 1000000 INFO @ Tue, 16 Jun 2020 10:18:30: 5000000 INFO @ Tue, 16 Jun 2020 10:18:36: 2000000 INFO @ Tue, 16 Jun 2020 10:18:38: 6000000 INFO @ Tue, 16 Jun 2020 10:18:44: 3000000 INFO @ Tue, 16 Jun 2020 10:18:47: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:18:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:18:51: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:18:51: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:18:51: 4000000 INFO @ Tue, 16 Jun 2020 10:18:55: 8000000 INFO @ Tue, 16 Jun 2020 10:18:58: 1000000 INFO @ Tue, 16 Jun 2020 10:18:59: 5000000 INFO @ Tue, 16 Jun 2020 10:19:03: 9000000 INFO @ Tue, 16 Jun 2020 10:19:06: 2000000 INFO @ Tue, 16 Jun 2020 10:19:06: 6000000 INFO @ Tue, 16 Jun 2020 10:19:11: 10000000 INFO @ Tue, 16 Jun 2020 10:19:14: 3000000 INFO @ Tue, 16 Jun 2020 10:19:14: 7000000 INFO @ Tue, 16 Jun 2020 10:19:19: 11000000 INFO @ Tue, 16 Jun 2020 10:19:21: 4000000 INFO @ Tue, 16 Jun 2020 10:19:22: 8000000 INFO @ Tue, 16 Jun 2020 10:19:27: 12000000 INFO @ Tue, 16 Jun 2020 10:19:29: 5000000 INFO @ Tue, 16 Jun 2020 10:19:29: 9000000 INFO @ Tue, 16 Jun 2020 10:19:35: 13000000 INFO @ Tue, 16 Jun 2020 10:19:37: 6000000 INFO @ Tue, 16 Jun 2020 10:19:37: 10000000 INFO @ Tue, 16 Jun 2020 10:19:43: 14000000 INFO @ Tue, 16 Jun 2020 10:19:44: 7000000 INFO @ Tue, 16 Jun 2020 10:19:45: 11000000 INFO @ Tue, 16 Jun 2020 10:19:51: 15000000 INFO @ Tue, 16 Jun 2020 10:19:52: 8000000 INFO @ Tue, 16 Jun 2020 10:19:52: 12000000 INFO @ Tue, 16 Jun 2020 10:19:58: 16000000 INFO @ Tue, 16 Jun 2020 10:20:00: 9000000 INFO @ Tue, 16 Jun 2020 10:20:00: 13000000 INFO @ Tue, 16 Jun 2020 10:20:06: 17000000 INFO @ Tue, 16 Jun 2020 10:20:07: 10000000 INFO @ Tue, 16 Jun 2020 10:20:08: 14000000 INFO @ Tue, 16 Jun 2020 10:20:14: 18000000 INFO @ Tue, 16 Jun 2020 10:20:15: 11000000 INFO @ Tue, 16 Jun 2020 10:20:15: 15000000 INFO @ Tue, 16 Jun 2020 10:20:21: 19000000 INFO @ Tue, 16 Jun 2020 10:20:22: 12000000 INFO @ Tue, 16 Jun 2020 10:20:22: 16000000 INFO @ Tue, 16 Jun 2020 10:20:29: 20000000 INFO @ Tue, 16 Jun 2020 10:20:30: 13000000 INFO @ Tue, 16 Jun 2020 10:20:30: 17000000 INFO @ Tue, 16 Jun 2020 10:20:37: 21000000 INFO @ Tue, 16 Jun 2020 10:20:37: 14000000 INFO @ Tue, 16 Jun 2020 10:20:37: 18000000 INFO @ Tue, 16 Jun 2020 10:20:44: 22000000 INFO @ Tue, 16 Jun 2020 10:20:45: 19000000 INFO @ Tue, 16 Jun 2020 10:20:45: 15000000 INFO @ Tue, 16 Jun 2020 10:20:52: 20000000 INFO @ Tue, 16 Jun 2020 10:20:52: 23000000 INFO @ Tue, 16 Jun 2020 10:20:52: 16000000 INFO @ Tue, 16 Jun 2020 10:21:00: 21000000 INFO @ Tue, 16 Jun 2020 10:21:00: 17000000 INFO @ Tue, 16 Jun 2020 10:21:00: 24000000 INFO @ Tue, 16 Jun 2020 10:21:07: 22000000 INFO @ Tue, 16 Jun 2020 10:21:07: 18000000 INFO @ Tue, 16 Jun 2020 10:21:08: 25000000 INFO @ Tue, 16 Jun 2020 10:21:15: 23000000 INFO @ Tue, 16 Jun 2020 10:21:15: 19000000 INFO @ Tue, 16 Jun 2020 10:21:15: 26000000 INFO @ Tue, 16 Jun 2020 10:21:22: 24000000 INFO @ Tue, 16 Jun 2020 10:21:22: 20000000 INFO @ Tue, 16 Jun 2020 10:21:23: 27000000 INFO @ Tue, 16 Jun 2020 10:21:29: 25000000 INFO @ Tue, 16 Jun 2020 10:21:29: 21000000 INFO @ Tue, 16 Jun 2020 10:21:30: 28000000 INFO @ Tue, 16 Jun 2020 10:21:37: 26000000 INFO @ Tue, 16 Jun 2020 10:21:37: 22000000 INFO @ Tue, 16 Jun 2020 10:21:38: 29000000 INFO @ Tue, 16 Jun 2020 10:21:44: 27000000 INFO @ Tue, 16 Jun 2020 10:21:44: 23000000 INFO @ Tue, 16 Jun 2020 10:21:46: 30000000 INFO @ Tue, 16 Jun 2020 10:21:51: 28000000 INFO @ Tue, 16 Jun 2020 10:21:52: 24000000 INFO @ Tue, 16 Jun 2020 10:21:54: 31000000 INFO @ Tue, 16 Jun 2020 10:21:59: 29000000 INFO @ Tue, 16 Jun 2020 10:21:59: 25000000 INFO @ Tue, 16 Jun 2020 10:22:02: 32000000 INFO @ Tue, 16 Jun 2020 10:22:06: 30000000 INFO @ Tue, 16 Jun 2020 10:22:06: 26000000 INFO @ Tue, 16 Jun 2020 10:22:10: 33000000 INFO @ Tue, 16 Jun 2020 10:22:14: 31000000 INFO @ Tue, 16 Jun 2020 10:22:14: 27000000 INFO @ Tue, 16 Jun 2020 10:22:18: 34000000 INFO @ Tue, 16 Jun 2020 10:22:21: 32000000 INFO @ Tue, 16 Jun 2020 10:22:21: 28000000 INFO @ Tue, 16 Jun 2020 10:22:27: 35000000 INFO @ Tue, 16 Jun 2020 10:22:29: 33000000 INFO @ Tue, 16 Jun 2020 10:22:29: 29000000 INFO @ Tue, 16 Jun 2020 10:22:35: 36000000 INFO @ Tue, 16 Jun 2020 10:22:36: 34000000 INFO @ Tue, 16 Jun 2020 10:22:36: 30000000 INFO @ Tue, 16 Jun 2020 10:22:43: 37000000 INFO @ Tue, 16 Jun 2020 10:22:44: 35000000 INFO @ Tue, 16 Jun 2020 10:22:44: 31000000 INFO @ Tue, 16 Jun 2020 10:22:52: 36000000 INFO @ Tue, 16 Jun 2020 10:22:52: 32000000 INFO @ Tue, 16 Jun 2020 10:22:52: 38000000 INFO @ Tue, 16 Jun 2020 10:23:00: 37000000 INFO @ Tue, 16 Jun 2020 10:23:00: 33000000 INFO @ Tue, 16 Jun 2020 10:23:00: 39000000 INFO @ Tue, 16 Jun 2020 10:23:08: 38000000 INFO @ Tue, 16 Jun 2020 10:23:08: 34000000 INFO @ Tue, 16 Jun 2020 10:23:09: 40000000 INFO @ Tue, 16 Jun 2020 10:23:16: 39000000 INFO @ Tue, 16 Jun 2020 10:23:16: 35000000 INFO @ Tue, 16 Jun 2020 10:23:17: 41000000 INFO @ Tue, 16 Jun 2020 10:23:24: 40000000 INFO @ Tue, 16 Jun 2020 10:23:24: 36000000 INFO @ Tue, 16 Jun 2020 10:23:26: 42000000 INFO @ Tue, 16 Jun 2020 10:23:32: 41000000 INFO @ Tue, 16 Jun 2020 10:23:32: 37000000 INFO @ Tue, 16 Jun 2020 10:23:34: 43000000 INFO @ Tue, 16 Jun 2020 10:23:40: 42000000 INFO @ Tue, 16 Jun 2020 10:23:40: 38000000 INFO @ Tue, 16 Jun 2020 10:23:43: 44000000 INFO @ Tue, 16 Jun 2020 10:23:48: 43000000 INFO @ Tue, 16 Jun 2020 10:23:48: 39000000 INFO @ Tue, 16 Jun 2020 10:23:51: 45000000 INFO @ Tue, 16 Jun 2020 10:23:56: 44000000 INFO @ Tue, 16 Jun 2020 10:23:56: 40000000 INFO @ Tue, 16 Jun 2020 10:24:00: 46000000 INFO @ Tue, 16 Jun 2020 10:24:04: 45000000 INFO @ Tue, 16 Jun 2020 10:24:04: 41000000 INFO @ Tue, 16 Jun 2020 10:24:08: 47000000 INFO @ Tue, 16 Jun 2020 10:24:12: 46000000 INFO @ Tue, 16 Jun 2020 10:24:12: 42000000 INFO @ Tue, 16 Jun 2020 10:24:17: 48000000 INFO @ Tue, 16 Jun 2020 10:24:20: 47000000 INFO @ Tue, 16 Jun 2020 10:24:20: 43000000 INFO @ Tue, 16 Jun 2020 10:24:26: 49000000 INFO @ Tue, 16 Jun 2020 10:24:28: 48000000 INFO @ Tue, 16 Jun 2020 10:24:28: 44000000 INFO @ Tue, 16 Jun 2020 10:24:34: 50000000 INFO @ Tue, 16 Jun 2020 10:24:36: 49000000 INFO @ Tue, 16 Jun 2020 10:24:36: 45000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 10:24:43: 51000000 INFO @ Tue, 16 Jun 2020 10:24:43: 50000000 INFO @ Tue, 16 Jun 2020 10:24:43: 46000000 INFO @ Tue, 16 Jun 2020 10:24:51: 51000000 INFO @ Tue, 16 Jun 2020 10:24:51: 47000000 INFO @ Tue, 16 Jun 2020 10:24:52: 52000000 INFO @ Tue, 16 Jun 2020 10:24:59: 52000000 INFO @ Tue, 16 Jun 2020 10:24:59: 48000000 INFO @ Tue, 16 Jun 2020 10:25:00: 53000000 INFO @ Tue, 16 Jun 2020 10:25:07: 53000000 INFO @ Tue, 16 Jun 2020 10:25:07: 49000000 INFO @ Tue, 16 Jun 2020 10:25:09: 54000000 INFO @ Tue, 16 Jun 2020 10:25:14: 54000000 INFO @ Tue, 16 Jun 2020 10:25:15: 50000000 INFO @ Tue, 16 Jun 2020 10:25:17: 55000000 INFO @ Tue, 16 Jun 2020 10:25:22: 55000000 INFO @ Tue, 16 Jun 2020 10:25:22: 51000000 INFO @ Tue, 16 Jun 2020 10:25:26: 56000000 INFO @ Tue, 16 Jun 2020 10:25:30: 56000000 INFO @ Tue, 16 Jun 2020 10:25:30: 52000000 INFO @ Tue, 16 Jun 2020 10:25:34: 57000000 INFO @ Tue, 16 Jun 2020 10:25:38: 53000000 INFO @ Tue, 16 Jun 2020 10:25:39: 57000000 INFO @ Tue, 16 Jun 2020 10:25:43: 58000000 INFO @ Tue, 16 Jun 2020 10:25:46: 54000000 INFO @ Tue, 16 Jun 2020 10:25:47: 58000000 INFO @ Tue, 16 Jun 2020 10:25:51: 59000000 INFO @ Tue, 16 Jun 2020 10:25:53: 55000000 INFO @ Tue, 16 Jun 2020 10:25:55: 59000000 INFO @ Tue, 16 Jun 2020 10:26:00: 60000000 INFO @ Tue, 16 Jun 2020 10:26:01: 56000000 INFO @ Tue, 16 Jun 2020 10:26:02: 60000000 INFO @ Tue, 16 Jun 2020 10:26:08: 57000000 INFO @ Tue, 16 Jun 2020 10:26:09: 61000000 INFO @ Tue, 16 Jun 2020 10:26:10: 61000000 INFO @ Tue, 16 Jun 2020 10:26:16: 58000000 INFO @ Tue, 16 Jun 2020 10:26:17: 62000000 INFO @ Tue, 16 Jun 2020 10:26:18: 62000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 10:26:24: 59000000 INFO @ Tue, 16 Jun 2020 10:26:27: 63000000 INFO @ Tue, 16 Jun 2020 10:26:27: 63000000 INFO @ Tue, 16 Jun 2020 10:26:31: 60000000 INFO @ Tue, 16 Jun 2020 10:26:36: 64000000 INFO @ Tue, 16 Jun 2020 10:26:36: 64000000 INFO @ Tue, 16 Jun 2020 10:26:39: 61000000 INFO @ Tue, 16 Jun 2020 10:26:45: 65000000 INFO @ Tue, 16 Jun 2020 10:26:46: 65000000 INFO @ Tue, 16 Jun 2020 10:26:47: 62000000 INFO @ Tue, 16 Jun 2020 10:26:52: 66000000 INFO @ Tue, 16 Jun 2020 10:26:54: 66000000 INFO @ Tue, 16 Jun 2020 10:26:54: 63000000 INFO @ Tue, 16 Jun 2020 10:27:00: 67000000 INFO @ Tue, 16 Jun 2020 10:27:02: 64000000 INFO @ Tue, 16 Jun 2020 10:27:03: 67000000 INFO @ Tue, 16 Jun 2020 10:27:07: 68000000 INFO @ Tue, 16 Jun 2020 10:27:09: 65000000 INFO @ Tue, 16 Jun 2020 10:27:11: 68000000 INFO @ Tue, 16 Jun 2020 10:27:15: 69000000 INFO @ Tue, 16 Jun 2020 10:27:17: 66000000 INFO @ Tue, 16 Jun 2020 10:27:19: 69000000 INFO @ Tue, 16 Jun 2020 10:27:22: 70000000 INFO @ Tue, 16 Jun 2020 10:27:24: 67000000 INFO @ Tue, 16 Jun 2020 10:27:27: 70000000 INFO @ Tue, 16 Jun 2020 10:27:29: 71000000 INFO @ Tue, 16 Jun 2020 10:27:32: 68000000 INFO @ Tue, 16 Jun 2020 10:27:35: 71000000 INFO @ Tue, 16 Jun 2020 10:27:36: 72000000 INFO @ Tue, 16 Jun 2020 10:27:39: 69000000 INFO @ Tue, 16 Jun 2020 10:27:43: 72000000 INFO @ Tue, 16 Jun 2020 10:27:44: 73000000 INFO @ Tue, 16 Jun 2020 10:27:47: 70000000 INFO @ Tue, 16 Jun 2020 10:27:51: 74000000 INFO @ Tue, 16 Jun 2020 10:27:52: 73000000 INFO @ Tue, 16 Jun 2020 10:27:54: 71000000 INFO @ Tue, 16 Jun 2020 10:27:59: 75000000 INFO @ Tue, 16 Jun 2020 10:28:00: 74000000 INFO @ Tue, 16 Jun 2020 10:28:01: 72000000 INFO @ Tue, 16 Jun 2020 10:28:08: 76000000 INFO @ Tue, 16 Jun 2020 10:28:08: 75000000 INFO @ Tue, 16 Jun 2020 10:28:09: 73000000 INFO @ Tue, 16 Jun 2020 10:28:15: 76000000 INFO @ Tue, 16 Jun 2020 10:28:16: 77000000 INFO @ Tue, 16 Jun 2020 10:28:16: 74000000 INFO @ Tue, 16 Jun 2020 10:28:16: #1 tag size is determined as 75 bps INFO @ Tue, 16 Jun 2020 10:28:16: #1 tag size = 75 INFO @ Tue, 16 Jun 2020 10:28:16: #1 total tags in treatment: 37374603 INFO @ Tue, 16 Jun 2020 10:28:16: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:28:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:28:17: #1 tags after filtering in treatment: 32294222 INFO @ Tue, 16 Jun 2020 10:28:17: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 10:28:17: #1 finished! INFO @ Tue, 16 Jun 2020 10:28:17: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:28:17: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:28:19: #2 number of paired peaks: 67 WARNING @ Tue, 16 Jun 2020 10:28:19: Too few paired peaks (67) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 16 Jun 2020 10:28:19: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:28:22: 77000000 INFO @ Tue, 16 Jun 2020 10:28:23: #1 tag size is determined as 75 bps INFO @ Tue, 16 Jun 2020 10:28:23: #1 tag size = 75 INFO @ Tue, 16 Jun 2020 10:28:23: #1 total tags in treatment: 37374603 INFO @ Tue, 16 Jun 2020 10:28:23: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:28:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:28:23: #1 tags after filtering in treatment: 32294222 INFO @ Tue, 16 Jun 2020 10:28:23: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 10:28:23: #1 finished! INFO @ Tue, 16 Jun 2020 10:28:23: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:28:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:28:24: 75000000 INFO @ Tue, 16 Jun 2020 10:28:26: #2 number of paired peaks: 67 WARNING @ Tue, 16 Jun 2020 10:28:26: Too few paired peaks (67) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 16 Jun 2020 10:28:26: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:28:32: 76000000 INFO @ Tue, 16 Jun 2020 10:28:39: 77000000 INFO @ Tue, 16 Jun 2020 10:28:39: #1 tag size is determined as 75 bps INFO @ Tue, 16 Jun 2020 10:28:39: #1 tag size = 75 INFO @ Tue, 16 Jun 2020 10:28:39: #1 total tags in treatment: 37374603 INFO @ Tue, 16 Jun 2020 10:28:39: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:28:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:28:40: #1 tags after filtering in treatment: 32294222 INFO @ Tue, 16 Jun 2020 10:28:40: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 10:28:40: #1 finished! INFO @ Tue, 16 Jun 2020 10:28:40: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:28:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:28:42: #2 number of paired peaks: 67 WARNING @ Tue, 16 Jun 2020 10:28:42: Too few paired peaks (67) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 16 Jun 2020 10:28:42: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce11/SRX4012479/SRX4012479.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling