Job ID = 6367665 SRX = SRX3733159 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:30:05 prefetch.2.10.7: 1) Downloading 'SRR6760672'... 2020-06-15T23:30:05 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:43:15 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:43:15 prefetch.2.10.7: 1) 'SRR6760672' was downloaded successfully 2020-06-15T23:43:15 prefetch.2.10.7: 'SRR6760672' has 0 unresolved dependencies Read 46942664 spots for SRR6760672/SRR6760672.sra Written 46942664 spots for SRR6760672/SRR6760672.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:47:47 46942664 reads; of these: 46942664 (100.00%) were paired; of these: 3585857 (7.64%) aligned concordantly 0 times 40551742 (86.39%) aligned concordantly exactly 1 time 2805065 (5.98%) aligned concordantly >1 times ---- 3585857 pairs aligned concordantly 0 times; of these: 1103755 (30.78%) aligned discordantly 1 time ---- 2482102 pairs aligned 0 times concordantly or discordantly; of these: 4964204 mates make up the pairs; of these: 3871341 (77.99%) aligned 0 times 785152 (15.82%) aligned exactly 1 time 307711 (6.20%) aligned >1 times 95.88% overall alignment rate Time searching: 00:47:48 Overall time: 00:47:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 11556823 / 44212523 = 0.2614 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:01:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:01:08: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:01:08: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:01:13: 1000000 INFO @ Tue, 16 Jun 2020 10:01:19: 2000000 INFO @ Tue, 16 Jun 2020 10:01:24: 3000000 INFO @ Tue, 16 Jun 2020 10:01:30: 4000000 INFO @ Tue, 16 Jun 2020 10:01:35: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:01:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:01:38: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:01:38: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:01:41: 6000000 INFO @ Tue, 16 Jun 2020 10:01:44: 1000000 INFO @ Tue, 16 Jun 2020 10:01:47: 7000000 INFO @ Tue, 16 Jun 2020 10:01:50: 2000000 INFO @ Tue, 16 Jun 2020 10:01:53: 8000000 INFO @ Tue, 16 Jun 2020 10:01:56: 3000000 INFO @ Tue, 16 Jun 2020 10:01:59: 9000000 INFO @ Tue, 16 Jun 2020 10:02:02: 4000000 INFO @ Tue, 16 Jun 2020 10:02:05: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 10:02:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 10:02:08: #1 read tag files... INFO @ Tue, 16 Jun 2020 10:02:08: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 10:02:08: 5000000 INFO @ Tue, 16 Jun 2020 10:02:11: 11000000 INFO @ Tue, 16 Jun 2020 10:02:14: 1000000 INFO @ Tue, 16 Jun 2020 10:02:14: 6000000 INFO @ Tue, 16 Jun 2020 10:02:17: 12000000 INFO @ Tue, 16 Jun 2020 10:02:21: 7000000 INFO @ Tue, 16 Jun 2020 10:02:21: 2000000 INFO @ Tue, 16 Jun 2020 10:02:23: 13000000 INFO @ Tue, 16 Jun 2020 10:02:27: 8000000 INFO @ Tue, 16 Jun 2020 10:02:28: 3000000 INFO @ Tue, 16 Jun 2020 10:02:29: 14000000 INFO @ Tue, 16 Jun 2020 10:02:33: 9000000 INFO @ Tue, 16 Jun 2020 10:02:35: 4000000 INFO @ Tue, 16 Jun 2020 10:02:35: 15000000 INFO @ Tue, 16 Jun 2020 10:02:39: 10000000 INFO @ Tue, 16 Jun 2020 10:02:41: 16000000 INFO @ Tue, 16 Jun 2020 10:02:41: 5000000 INFO @ Tue, 16 Jun 2020 10:02:45: 11000000 INFO @ Tue, 16 Jun 2020 10:02:47: 17000000 INFO @ Tue, 16 Jun 2020 10:02:48: 6000000 INFO @ Tue, 16 Jun 2020 10:02:52: 12000000 INFO @ Tue, 16 Jun 2020 10:02:53: 18000000 INFO @ Tue, 16 Jun 2020 10:02:55: 7000000 INFO @ Tue, 16 Jun 2020 10:02:58: 13000000 INFO @ Tue, 16 Jun 2020 10:02:59: 19000000 INFO @ Tue, 16 Jun 2020 10:03:03: 8000000 INFO @ Tue, 16 Jun 2020 10:03:04: 14000000 INFO @ Tue, 16 Jun 2020 10:03:06: 20000000 INFO @ Tue, 16 Jun 2020 10:03:10: 9000000 INFO @ Tue, 16 Jun 2020 10:03:10: 15000000 INFO @ Tue, 16 Jun 2020 10:03:12: 21000000 INFO @ Tue, 16 Jun 2020 10:03:16: 16000000 INFO @ Tue, 16 Jun 2020 10:03:17: 10000000 INFO @ Tue, 16 Jun 2020 10:03:18: 22000000 INFO @ Tue, 16 Jun 2020 10:03:23: 17000000 INFO @ Tue, 16 Jun 2020 10:03:24: 11000000 INFO @ Tue, 16 Jun 2020 10:03:24: 23000000 INFO @ Tue, 16 Jun 2020 10:03:29: 18000000 INFO @ Tue, 16 Jun 2020 10:03:30: 24000000 INFO @ Tue, 16 Jun 2020 10:03:31: 12000000 INFO @ Tue, 16 Jun 2020 10:03:35: 19000000 INFO @ Tue, 16 Jun 2020 10:03:36: 25000000 INFO @ Tue, 16 Jun 2020 10:03:37: 13000000 INFO @ Tue, 16 Jun 2020 10:03:41: 20000000 INFO @ Tue, 16 Jun 2020 10:03:43: 26000000 INFO @ Tue, 16 Jun 2020 10:03:44: 14000000 INFO @ Tue, 16 Jun 2020 10:03:47: 21000000 INFO @ Tue, 16 Jun 2020 10:03:49: 27000000 INFO @ Tue, 16 Jun 2020 10:03:51: 15000000 INFO @ Tue, 16 Jun 2020 10:03:53: 22000000 INFO @ Tue, 16 Jun 2020 10:03:55: 28000000 INFO @ Tue, 16 Jun 2020 10:03:58: 16000000 INFO @ Tue, 16 Jun 2020 10:03:59: 23000000 INFO @ Tue, 16 Jun 2020 10:04:01: 29000000 INFO @ Tue, 16 Jun 2020 10:04:05: 17000000 INFO @ Tue, 16 Jun 2020 10:04:06: 24000000 INFO @ Tue, 16 Jun 2020 10:04:07: 30000000 INFO @ Tue, 16 Jun 2020 10:04:12: 25000000 INFO @ Tue, 16 Jun 2020 10:04:12: 18000000 INFO @ Tue, 16 Jun 2020 10:04:13: 31000000 INFO @ Tue, 16 Jun 2020 10:04:18: 26000000 INFO @ Tue, 16 Jun 2020 10:04:19: 19000000 INFO @ Tue, 16 Jun 2020 10:04:20: 32000000 INFO @ Tue, 16 Jun 2020 10:04:24: 27000000 INFO @ Tue, 16 Jun 2020 10:04:25: 20000000 INFO @ Tue, 16 Jun 2020 10:04:26: 33000000 INFO @ Tue, 16 Jun 2020 10:04:30: 28000000 INFO @ Tue, 16 Jun 2020 10:04:32: 34000000 INFO @ Tue, 16 Jun 2020 10:04:32: 21000000 INFO @ Tue, 16 Jun 2020 10:04:36: 29000000 INFO @ Tue, 16 Jun 2020 10:04:38: 35000000 INFO @ Tue, 16 Jun 2020 10:04:39: 22000000 INFO @ Tue, 16 Jun 2020 10:04:42: 30000000 INFO @ Tue, 16 Jun 2020 10:04:44: 36000000 INFO @ Tue, 16 Jun 2020 10:04:46: 23000000 INFO @ Tue, 16 Jun 2020 10:04:48: 31000000 INFO @ Tue, 16 Jun 2020 10:04:50: 37000000 INFO @ Tue, 16 Jun 2020 10:04:53: 24000000 INFO @ Tue, 16 Jun 2020 10:04:55: 32000000 INFO @ Tue, 16 Jun 2020 10:04:56: 38000000 INFO @ Tue, 16 Jun 2020 10:05:00: 25000000 INFO @ Tue, 16 Jun 2020 10:05:01: 33000000 INFO @ Tue, 16 Jun 2020 10:05:02: 39000000 INFO @ Tue, 16 Jun 2020 10:05:06: 26000000 INFO @ Tue, 16 Jun 2020 10:05:07: 34000000 INFO @ Tue, 16 Jun 2020 10:05:09: 40000000 INFO @ Tue, 16 Jun 2020 10:05:13: 35000000 INFO @ Tue, 16 Jun 2020 10:05:13: 27000000 INFO @ Tue, 16 Jun 2020 10:05:15: 41000000 INFO @ Tue, 16 Jun 2020 10:05:19: 36000000 INFO @ Tue, 16 Jun 2020 10:05:20: 28000000 INFO @ Tue, 16 Jun 2020 10:05:22: 42000000 INFO @ Tue, 16 Jun 2020 10:05:25: 37000000 INFO @ Tue, 16 Jun 2020 10:05:27: 29000000 INFO @ Tue, 16 Jun 2020 10:05:29: 43000000 INFO @ Tue, 16 Jun 2020 10:05:31: 38000000 INFO @ Tue, 16 Jun 2020 10:05:33: 30000000 INFO @ Tue, 16 Jun 2020 10:05:36: 44000000 INFO @ Tue, 16 Jun 2020 10:05:38: 39000000 INFO @ Tue, 16 Jun 2020 10:05:40: 31000000 INFO @ Tue, 16 Jun 2020 10:05:43: 45000000 INFO @ Tue, 16 Jun 2020 10:05:44: 40000000 INFO @ Tue, 16 Jun 2020 10:05:47: 32000000 INFO @ Tue, 16 Jun 2020 10:05:49: 46000000 INFO @ Tue, 16 Jun 2020 10:05:50: 41000000 INFO @ Tue, 16 Jun 2020 10:05:54: 33000000 INFO @ Tue, 16 Jun 2020 10:05:55: 47000000 INFO @ Tue, 16 Jun 2020 10:05:57: 42000000 INFO @ Tue, 16 Jun 2020 10:06:01: 34000000 INFO @ Tue, 16 Jun 2020 10:06:01: 48000000 INFO @ Tue, 16 Jun 2020 10:06:04: 43000000 INFO @ Tue, 16 Jun 2020 10:06:07: 35000000 INFO @ Tue, 16 Jun 2020 10:06:08: 49000000 INFO @ Tue, 16 Jun 2020 10:06:11: 44000000 INFO @ Tue, 16 Jun 2020 10:06:14: 50000000 INFO @ Tue, 16 Jun 2020 10:06:14: 36000000 INFO @ Tue, 16 Jun 2020 10:06:18: 45000000 INFO @ Tue, 16 Jun 2020 10:06:20: 51000000 INFO @ Tue, 16 Jun 2020 10:06:21: 37000000 INFO @ Tue, 16 Jun 2020 10:06:24: 46000000 INFO @ Tue, 16 Jun 2020 10:06:26: 52000000 INFO @ Tue, 16 Jun 2020 10:06:28: 38000000 INFO @ Tue, 16 Jun 2020 10:06:30: 47000000 INFO @ Tue, 16 Jun 2020 10:06:32: 53000000 INFO @ Tue, 16 Jun 2020 10:06:35: 39000000 INFO @ Tue, 16 Jun 2020 10:06:36: 48000000 INFO @ Tue, 16 Jun 2020 10:06:38: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 10:06:41: 40000000 INFO @ Tue, 16 Jun 2020 10:06:43: 49000000 INFO @ Tue, 16 Jun 2020 10:06:44: 55000000 INFO @ Tue, 16 Jun 2020 10:06:48: 41000000 INFO @ Tue, 16 Jun 2020 10:06:49: 50000000 INFO @ Tue, 16 Jun 2020 10:06:50: 56000000 INFO @ Tue, 16 Jun 2020 10:06:54: 42000000 INFO @ Tue, 16 Jun 2020 10:06:55: 51000000 INFO @ Tue, 16 Jun 2020 10:06:57: 57000000 INFO @ Tue, 16 Jun 2020 10:07:00: 43000000 INFO @ Tue, 16 Jun 2020 10:07:01: 52000000 INFO @ Tue, 16 Jun 2020 10:07:03: 58000000 INFO @ Tue, 16 Jun 2020 10:07:06: 44000000 INFO @ Tue, 16 Jun 2020 10:07:08: 53000000 INFO @ Tue, 16 Jun 2020 10:07:09: 59000000 INFO @ Tue, 16 Jun 2020 10:07:13: 45000000 INFO @ Tue, 16 Jun 2020 10:07:14: 54000000 INFO @ Tue, 16 Jun 2020 10:07:15: 60000000 INFO @ Tue, 16 Jun 2020 10:07:19: 46000000 INFO @ Tue, 16 Jun 2020 10:07:20: 55000000 INFO @ Tue, 16 Jun 2020 10:07:21: 61000000 INFO @ Tue, 16 Jun 2020 10:07:26: 47000000 INFO @ Tue, 16 Jun 2020 10:07:26: 56000000 INFO @ Tue, 16 Jun 2020 10:07:27: 62000000 INFO @ Tue, 16 Jun 2020 10:07:32: 57000000 INFO @ Tue, 16 Jun 2020 10:07:33: 48000000 INFO @ Tue, 16 Jun 2020 10:07:34: 63000000 INFO @ Tue, 16 Jun 2020 10:07:39: 58000000 INFO @ Tue, 16 Jun 2020 10:07:40: 64000000 INFO @ Tue, 16 Jun 2020 10:07:40: 49000000 INFO @ Tue, 16 Jun 2020 10:07:45: 59000000 INFO @ Tue, 16 Jun 2020 10:07:46: 65000000 INFO @ Tue, 16 Jun 2020 10:07:47: 50000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 10:07:51: 60000000 INFO @ Tue, 16 Jun 2020 10:07:52: 66000000 INFO @ Tue, 16 Jun 2020 10:07:54: 51000000 INFO @ Tue, 16 Jun 2020 10:07:57: 61000000 INFO @ Tue, 16 Jun 2020 10:07:58: #1 tag size is determined as 76 bps INFO @ Tue, 16 Jun 2020 10:07:58: #1 tag size = 76 INFO @ Tue, 16 Jun 2020 10:07:58: #1 total tags in treatment: 31906888 INFO @ Tue, 16 Jun 2020 10:07:58: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:07:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:07:59: #1 tags after filtering in treatment: 25333706 INFO @ Tue, 16 Jun 2020 10:07:59: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 10:07:59: #1 finished! INFO @ Tue, 16 Jun 2020 10:07:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:07:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:08:00: #2 number of paired peaks: 175 WARNING @ Tue, 16 Jun 2020 10:08:00: Fewer paired peaks (175) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 175 pairs to build model! INFO @ Tue, 16 Jun 2020 10:08:00: start model_add_line... INFO @ Tue, 16 Jun 2020 10:08:00: start X-correlation... INFO @ Tue, 16 Jun 2020 10:08:00: end of X-cor INFO @ Tue, 16 Jun 2020 10:08:00: #2 finished! INFO @ Tue, 16 Jun 2020 10:08:00: #2 predicted fragment length is 192 bps INFO @ Tue, 16 Jun 2020 10:08:00: #2 alternative fragment length(s) may be 4,167,186,192 bps INFO @ Tue, 16 Jun 2020 10:08:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.05_model.r INFO @ Tue, 16 Jun 2020 10:08:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:08:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:08:01: 52000000 INFO @ Tue, 16 Jun 2020 10:08:03: 62000000 INFO @ Tue, 16 Jun 2020 10:08:07: 53000000 INFO @ Tue, 16 Jun 2020 10:08:10: 63000000 INFO @ Tue, 16 Jun 2020 10:08:14: 54000000 INFO @ Tue, 16 Jun 2020 10:08:16: 64000000 INFO @ Tue, 16 Jun 2020 10:08:21: 55000000 INFO @ Tue, 16 Jun 2020 10:08:22: 65000000 INFO @ Tue, 16 Jun 2020 10:08:28: 56000000 INFO @ Tue, 16 Jun 2020 10:08:28: 66000000 INFO @ Tue, 16 Jun 2020 10:08:34: #1 tag size is determined as 76 bps INFO @ Tue, 16 Jun 2020 10:08:34: #1 tag size = 76 INFO @ Tue, 16 Jun 2020 10:08:34: #1 total tags in treatment: 31906888 INFO @ Tue, 16 Jun 2020 10:08:34: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:08:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:08:35: 57000000 INFO @ Tue, 16 Jun 2020 10:08:35: #1 tags after filtering in treatment: 25333706 INFO @ Tue, 16 Jun 2020 10:08:35: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 10:08:35: #1 finished! INFO @ Tue, 16 Jun 2020 10:08:35: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:08:35: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:08:36: #2 number of paired peaks: 175 WARNING @ Tue, 16 Jun 2020 10:08:36: Fewer paired peaks (175) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 175 pairs to build model! INFO @ Tue, 16 Jun 2020 10:08:36: start model_add_line... INFO @ Tue, 16 Jun 2020 10:08:37: start X-correlation... INFO @ Tue, 16 Jun 2020 10:08:37: end of X-cor INFO @ Tue, 16 Jun 2020 10:08:37: #2 finished! INFO @ Tue, 16 Jun 2020 10:08:37: #2 predicted fragment length is 192 bps INFO @ Tue, 16 Jun 2020 10:08:37: #2 alternative fragment length(s) may be 4,167,186,192 bps INFO @ Tue, 16 Jun 2020 10:08:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.10_model.r INFO @ Tue, 16 Jun 2020 10:08:37: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:08:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:08:41: 58000000 INFO @ Tue, 16 Jun 2020 10:08:48: 59000000 INFO @ Tue, 16 Jun 2020 10:08:52: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:08:54: 60000000 INFO @ Tue, 16 Jun 2020 10:09:01: 61000000 INFO @ Tue, 16 Jun 2020 10:09:07: 62000000 INFO @ Tue, 16 Jun 2020 10:09:14: 63000000 INFO @ Tue, 16 Jun 2020 10:09:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.05_peaks.xls INFO @ Tue, 16 Jun 2020 10:09:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:09:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.05_summits.bed INFO @ Tue, 16 Jun 2020 10:09:15: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6098 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:09:21: 64000000 INFO @ Tue, 16 Jun 2020 10:09:27: 65000000 INFO @ Tue, 16 Jun 2020 10:09:30: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:09:34: 66000000 INFO @ Tue, 16 Jun 2020 10:09:40: #1 tag size is determined as 76 bps INFO @ Tue, 16 Jun 2020 10:09:40: #1 tag size = 76 INFO @ Tue, 16 Jun 2020 10:09:40: #1 total tags in treatment: 31906888 INFO @ Tue, 16 Jun 2020 10:09:40: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 10:09:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 10:09:40: #1 tags after filtering in treatment: 25333706 INFO @ Tue, 16 Jun 2020 10:09:40: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 10:09:40: #1 finished! INFO @ Tue, 16 Jun 2020 10:09:40: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 10:09:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 10:09:42: #2 number of paired peaks: 175 WARNING @ Tue, 16 Jun 2020 10:09:42: Fewer paired peaks (175) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 175 pairs to build model! INFO @ Tue, 16 Jun 2020 10:09:42: start model_add_line... INFO @ Tue, 16 Jun 2020 10:09:42: start X-correlation... INFO @ Tue, 16 Jun 2020 10:09:42: end of X-cor INFO @ Tue, 16 Jun 2020 10:09:42: #2 finished! INFO @ Tue, 16 Jun 2020 10:09:42: #2 predicted fragment length is 192 bps INFO @ Tue, 16 Jun 2020 10:09:42: #2 alternative fragment length(s) may be 4,167,186,192 bps INFO @ Tue, 16 Jun 2020 10:09:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.20_model.r INFO @ Tue, 16 Jun 2020 10:09:42: #3 Call peaks... INFO @ Tue, 16 Jun 2020 10:09:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 10:09:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.10_peaks.xls INFO @ Tue, 16 Jun 2020 10:09:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:09:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.10_summits.bed INFO @ Tue, 16 Jun 2020 10:09:53: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (3468 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 10:10:34: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 10:10:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.20_peaks.xls INFO @ Tue, 16 Jun 2020 10:10:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 10:10:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3733159/SRX3733159.20_summits.bed INFO @ Tue, 16 Jun 2020 10:10:56: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1511 records, 4 fields): 2 millis CompletedMACS2peakCalling