Job ID = 12265595 SRX = SRX3141083 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:49:05 62163267 reads; of these: 62163267 (100.00%) were paired; of these: 32897875 (52.92%) aligned concordantly 0 times 23674248 (38.08%) aligned concordantly exactly 1 time 5591144 (8.99%) aligned concordantly >1 times ---- 32897875 pairs aligned concordantly 0 times; of these: 4117026 (12.51%) aligned discordantly 1 time ---- 28780849 pairs aligned 0 times concordantly or discordantly; of these: 57561698 mates make up the pairs; of these: 54983043 (95.52%) aligned 0 times 819274 (1.42%) aligned exactly 1 time 1759381 (3.06%) aligned >1 times 55.78% overall alignment rate Time searching: 00:49:06 Overall time: 00:49:06 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 12319212 / 33016310 = 0.3731 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:01:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:01:01: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:01:01: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:01:07: 1000000 INFO @ Sat, 03 Apr 2021 09:01:13: 2000000 INFO @ Sat, 03 Apr 2021 09:01:19: 3000000 INFO @ Sat, 03 Apr 2021 09:01:26: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:01:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:01:30: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:01:30: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:01:33: 5000000 INFO @ Sat, 03 Apr 2021 09:01:37: 1000000 INFO @ Sat, 03 Apr 2021 09:01:39: 6000000 INFO @ Sat, 03 Apr 2021 09:01:44: 2000000 INFO @ Sat, 03 Apr 2021 09:01:46: 7000000 INFO @ Sat, 03 Apr 2021 09:01:51: 3000000 INFO @ Sat, 03 Apr 2021 09:01:52: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:01:58: 4000000 INFO @ Sat, 03 Apr 2021 09:01:59: 9000000 INFO @ Sat, 03 Apr 2021 09:02:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:02:00: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:02:00: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:02:05: 5000000 INFO @ Sat, 03 Apr 2021 09:02:06: 10000000 INFO @ Sat, 03 Apr 2021 09:02:08: 1000000 INFO @ Sat, 03 Apr 2021 09:02:12: 6000000 INFO @ Sat, 03 Apr 2021 09:02:13: 11000000 INFO @ Sat, 03 Apr 2021 09:02:15: 2000000 INFO @ Sat, 03 Apr 2021 09:02:19: 7000000 INFO @ Sat, 03 Apr 2021 09:02:21: 12000000 INFO @ Sat, 03 Apr 2021 09:02:23: 3000000 INFO @ Sat, 03 Apr 2021 09:02:27: 8000000 INFO @ Sat, 03 Apr 2021 09:02:28: 13000000 INFO @ Sat, 03 Apr 2021 09:02:31: 4000000 INFO @ Sat, 03 Apr 2021 09:02:34: 9000000 INFO @ Sat, 03 Apr 2021 09:02:36: 14000000 INFO @ Sat, 03 Apr 2021 09:02:38: 5000000 INFO @ Sat, 03 Apr 2021 09:02:41: 10000000 INFO @ Sat, 03 Apr 2021 09:02:43: 15000000 INFO @ Sat, 03 Apr 2021 09:02:45: 6000000 INFO @ Sat, 03 Apr 2021 09:02:48: 11000000 INFO @ Sat, 03 Apr 2021 09:02:52: 16000000 INFO @ Sat, 03 Apr 2021 09:02:53: 7000000 INFO @ Sat, 03 Apr 2021 09:02:56: 12000000 INFO @ Sat, 03 Apr 2021 09:02:59: 17000000 INFO @ Sat, 03 Apr 2021 09:03:00: 8000000 INFO @ Sat, 03 Apr 2021 09:03:03: 13000000 INFO @ Sat, 03 Apr 2021 09:03:07: 9000000 INFO @ Sat, 03 Apr 2021 09:03:07: 18000000 INFO @ Sat, 03 Apr 2021 09:03:11: 14000000 INFO @ Sat, 03 Apr 2021 09:03:14: 10000000 INFO @ Sat, 03 Apr 2021 09:03:15: 19000000 INFO @ Sat, 03 Apr 2021 09:03:18: 15000000 INFO @ Sat, 03 Apr 2021 09:03:22: 11000000 INFO @ Sat, 03 Apr 2021 09:03:22: 20000000 INFO @ Sat, 03 Apr 2021 09:03:25: 16000000 INFO @ Sat, 03 Apr 2021 09:03:29: 12000000 INFO @ Sat, 03 Apr 2021 09:03:30: 21000000 INFO @ Sat, 03 Apr 2021 09:03:33: 17000000 INFO @ Sat, 03 Apr 2021 09:03:36: 13000000 INFO @ Sat, 03 Apr 2021 09:03:37: 22000000 INFO @ Sat, 03 Apr 2021 09:03:40: 18000000 INFO @ Sat, 03 Apr 2021 09:03:43: 14000000 INFO @ Sat, 03 Apr 2021 09:03:45: 23000000 INFO @ Sat, 03 Apr 2021 09:03:48: 19000000 INFO @ Sat, 03 Apr 2021 09:03:51: 15000000 INFO @ Sat, 03 Apr 2021 09:03:52: 24000000 INFO @ Sat, 03 Apr 2021 09:03:55: 20000000 INFO @ Sat, 03 Apr 2021 09:03:58: 16000000 INFO @ Sat, 03 Apr 2021 09:03:59: 25000000 INFO @ Sat, 03 Apr 2021 09:04:03: 21000000 INFO @ Sat, 03 Apr 2021 09:04:06: 17000000 INFO @ Sat, 03 Apr 2021 09:04:07: 26000000 INFO @ Sat, 03 Apr 2021 09:04:11: 22000000 INFO @ Sat, 03 Apr 2021 09:04:14: 18000000 INFO @ Sat, 03 Apr 2021 09:04:15: 27000000 INFO @ Sat, 03 Apr 2021 09:04:18: 23000000 INFO @ Sat, 03 Apr 2021 09:04:22: 19000000 INFO @ Sat, 03 Apr 2021 09:04:23: 28000000 INFO @ Sat, 03 Apr 2021 09:04:26: 24000000 INFO @ Sat, 03 Apr 2021 09:04:29: 20000000 INFO @ Sat, 03 Apr 2021 09:04:30: 29000000 INFO @ Sat, 03 Apr 2021 09:04:33: 25000000 INFO @ Sat, 03 Apr 2021 09:04:37: 21000000 INFO @ Sat, 03 Apr 2021 09:04:37: 30000000 INFO @ Sat, 03 Apr 2021 09:04:41: 26000000 INFO @ Sat, 03 Apr 2021 09:04:44: 22000000 INFO @ Sat, 03 Apr 2021 09:04:45: 31000000 INFO @ Sat, 03 Apr 2021 09:04:48: 27000000 INFO @ Sat, 03 Apr 2021 09:04:52: 23000000 INFO @ Sat, 03 Apr 2021 09:04:52: 32000000 INFO @ Sat, 03 Apr 2021 09:04:55: 28000000 INFO @ Sat, 03 Apr 2021 09:04:59: 24000000 INFO @ Sat, 03 Apr 2021 09:04:59: 33000000 INFO @ Sat, 03 Apr 2021 09:05:03: 29000000 INFO @ Sat, 03 Apr 2021 09:05:06: 25000000 INFO @ Sat, 03 Apr 2021 09:05:07: 34000000 INFO @ Sat, 03 Apr 2021 09:05:10: 30000000 INFO @ Sat, 03 Apr 2021 09:05:14: 26000000 INFO @ Sat, 03 Apr 2021 09:05:14: 35000000 INFO @ Sat, 03 Apr 2021 09:05:18: 31000000 INFO @ Sat, 03 Apr 2021 09:05:21: 27000000 INFO @ Sat, 03 Apr 2021 09:05:22: 36000000 INFO @ Sat, 03 Apr 2021 09:05:25: 32000000 INFO @ Sat, 03 Apr 2021 09:05:29: 28000000 INFO @ Sat, 03 Apr 2021 09:05:29: 37000000 INFO @ Sat, 03 Apr 2021 09:05:33: 33000000 INFO @ Sat, 03 Apr 2021 09:05:36: 29000000 INFO @ Sat, 03 Apr 2021 09:05:37: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:05:41: 34000000 INFO @ Sat, 03 Apr 2021 09:05:44: 30000000 INFO @ Sat, 03 Apr 2021 09:05:44: 39000000 INFO @ Sat, 03 Apr 2021 09:05:49: 35000000 INFO @ Sat, 03 Apr 2021 09:05:51: 31000000 INFO @ Sat, 03 Apr 2021 09:05:52: 40000000 INFO @ Sat, 03 Apr 2021 09:05:56: 36000000 INFO @ Sat, 03 Apr 2021 09:05:59: 32000000 INFO @ Sat, 03 Apr 2021 09:05:59: 41000000 INFO @ Sat, 03 Apr 2021 09:06:04: 37000000 INFO @ Sat, 03 Apr 2021 09:06:06: 42000000 INFO @ Sat, 03 Apr 2021 09:06:07: 33000000 INFO @ Sat, 03 Apr 2021 09:06:11: 38000000 INFO @ Sat, 03 Apr 2021 09:06:14: 43000000 INFO @ Sat, 03 Apr 2021 09:06:14: 34000000 INFO @ Sat, 03 Apr 2021 09:06:18: 39000000 INFO @ Sat, 03 Apr 2021 09:06:21: 44000000 INFO @ Sat, 03 Apr 2021 09:06:22: 35000000 INFO @ Sat, 03 Apr 2021 09:06:26: 40000000 INFO @ Sat, 03 Apr 2021 09:06:26: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:06:26: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:06:26: #1 total tags in treatment: 18467523 INFO @ Sat, 03 Apr 2021 09:06:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:06:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:06:27: #1 tags after filtering in treatment: 12499959 INFO @ Sat, 03 Apr 2021 09:06:27: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 09:06:27: #1 finished! INFO @ Sat, 03 Apr 2021 09:06:27: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:06:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:06:28: #2 number of paired peaks: 417 WARNING @ Sat, 03 Apr 2021 09:06:28: Fewer paired peaks (417) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 417 pairs to build model! INFO @ Sat, 03 Apr 2021 09:06:28: start model_add_line... INFO @ Sat, 03 Apr 2021 09:06:28: start X-correlation... INFO @ Sat, 03 Apr 2021 09:06:28: end of X-cor INFO @ Sat, 03 Apr 2021 09:06:28: #2 finished! INFO @ Sat, 03 Apr 2021 09:06:28: #2 predicted fragment length is 98 bps INFO @ Sat, 03 Apr 2021 09:06:28: #2 alternative fragment length(s) may be 98 bps INFO @ Sat, 03 Apr 2021 09:06:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.05_model.r WARNING @ Sat, 03 Apr 2021 09:06:28: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:06:28: #2 You may need to consider one of the other alternative d(s): 98 WARNING @ Sat, 03 Apr 2021 09:06:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:06:28: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:06:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:06:29: 36000000 INFO @ Sat, 03 Apr 2021 09:06:32: 41000000 INFO @ Sat, 03 Apr 2021 09:06:36: 37000000 INFO @ Sat, 03 Apr 2021 09:06:39: 42000000 INFO @ Sat, 03 Apr 2021 09:06:43: 38000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:06:46: 43000000 INFO @ Sat, 03 Apr 2021 09:06:49: 39000000 INFO @ Sat, 03 Apr 2021 09:06:52: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:06:52: 44000000 INFO @ Sat, 03 Apr 2021 09:06:56: 40000000 INFO @ Sat, 03 Apr 2021 09:06:57: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:06:57: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:06:57: #1 total tags in treatment: 18467523 INFO @ Sat, 03 Apr 2021 09:06:57: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:06:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:06:57: #1 tags after filtering in treatment: 12499959 INFO @ Sat, 03 Apr 2021 09:06:57: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 09:06:57: #1 finished! INFO @ Sat, 03 Apr 2021 09:06:57: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:06:57: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:06:58: #2 number of paired peaks: 417 WARNING @ Sat, 03 Apr 2021 09:06:58: Fewer paired peaks (417) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 417 pairs to build model! INFO @ Sat, 03 Apr 2021 09:06:58: start model_add_line... INFO @ Sat, 03 Apr 2021 09:06:59: start X-correlation... INFO @ Sat, 03 Apr 2021 09:06:59: end of X-cor INFO @ Sat, 03 Apr 2021 09:06:59: #2 finished! INFO @ Sat, 03 Apr 2021 09:06:59: #2 predicted fragment length is 98 bps INFO @ Sat, 03 Apr 2021 09:06:59: #2 alternative fragment length(s) may be 98 bps INFO @ Sat, 03 Apr 2021 09:06:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.10_model.r WARNING @ Sat, 03 Apr 2021 09:06:59: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:06:59: #2 You may need to consider one of the other alternative d(s): 98 WARNING @ Sat, 03 Apr 2021 09:06:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:06:59: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:06:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:07:02: 41000000 INFO @ Sat, 03 Apr 2021 09:07:06: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:07:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:07:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.05_summits.bed INFO @ Sat, 03 Apr 2021 09:07:06: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (9222 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:07:09: 42000000 INFO @ Sat, 03 Apr 2021 09:07:15: 43000000 INFO @ Sat, 03 Apr 2021 09:07:22: 44000000 INFO @ Sat, 03 Apr 2021 09:07:23: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:07:26: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:07:26: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:07:26: #1 total tags in treatment: 18467523 INFO @ Sat, 03 Apr 2021 09:07:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:07:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:07:27: #1 tags after filtering in treatment: 12499959 INFO @ Sat, 03 Apr 2021 09:07:27: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 09:07:27: #1 finished! INFO @ Sat, 03 Apr 2021 09:07:27: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:07:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:07:28: #2 number of paired peaks: 417 WARNING @ Sat, 03 Apr 2021 09:07:28: Fewer paired peaks (417) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 417 pairs to build model! INFO @ Sat, 03 Apr 2021 09:07:28: start model_add_line... INFO @ Sat, 03 Apr 2021 09:07:28: start X-correlation... INFO @ Sat, 03 Apr 2021 09:07:28: end of X-cor INFO @ Sat, 03 Apr 2021 09:07:28: #2 finished! INFO @ Sat, 03 Apr 2021 09:07:28: #2 predicted fragment length is 98 bps INFO @ Sat, 03 Apr 2021 09:07:28: #2 alternative fragment length(s) may be 98 bps INFO @ Sat, 03 Apr 2021 09:07:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.20_model.r WARNING @ Sat, 03 Apr 2021 09:07:28: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:07:28: #2 You may need to consider one of the other alternative d(s): 98 WARNING @ Sat, 03 Apr 2021 09:07:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:07:28: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:07:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:07:36: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:07:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:07:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.10_summits.bed INFO @ Sat, 03 Apr 2021 09:07:36: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (5316 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:07:51: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:08:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:08:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:08:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3141083/SRX3141083.20_summits.bed INFO @ Sat, 03 Apr 2021 09:08:04: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2410 records, 4 fields): 5 millis CompletedMACS2peakCalling