Job ID = 12265468 SRX = SRX3029135 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:25 41375988 reads; of these: 41375988 (100.00%) were paired; of these: 14944602 (36.12%) aligned concordantly 0 times 23017309 (55.63%) aligned concordantly exactly 1 time 3414077 (8.25%) aligned concordantly >1 times ---- 14944602 pairs aligned concordantly 0 times; of these: 4516508 (30.22%) aligned discordantly 1 time ---- 10428094 pairs aligned 0 times concordantly or discordantly; of these: 20856188 mates make up the pairs; of these: 18671628 (89.53%) aligned 0 times 987911 (4.74%) aligned exactly 1 time 1196649 (5.74%) aligned >1 times 77.44% overall alignment rate Time searching: 00:48:25 Overall time: 00:48:25 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 5771138 / 30605213 = 0.1886 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:33:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:33:35: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:33:35: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:33:46: 1000000 INFO @ Sat, 03 Apr 2021 08:33:55: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:34:04: 3000000 INFO @ Sat, 03 Apr 2021 08:34:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:34:05: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:34:05: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:34:14: 4000000 INFO @ Sat, 03 Apr 2021 08:34:16: 1000000 INFO @ Sat, 03 Apr 2021 08:34:24: 5000000 INFO @ Sat, 03 Apr 2021 08:34:28: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:34:33: 6000000 INFO @ Sat, 03 Apr 2021 08:34:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:34:35: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:34:35: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:34:40: 3000000 INFO @ Sat, 03 Apr 2021 08:34:44: 7000000 INFO @ Sat, 03 Apr 2021 08:34:46: 1000000 INFO @ Sat, 03 Apr 2021 08:34:52: 4000000 INFO @ Sat, 03 Apr 2021 08:34:54: 8000000 INFO @ Sat, 03 Apr 2021 08:34:56: 2000000 INFO @ Sat, 03 Apr 2021 08:35:03: 5000000 INFO @ Sat, 03 Apr 2021 08:35:05: 9000000 INFO @ Sat, 03 Apr 2021 08:35:07: 3000000 INFO @ Sat, 03 Apr 2021 08:35:15: 6000000 INFO @ Sat, 03 Apr 2021 08:35:16: 10000000 INFO @ Sat, 03 Apr 2021 08:35:18: 4000000 INFO @ Sat, 03 Apr 2021 08:35:26: 7000000 INFO @ Sat, 03 Apr 2021 08:35:27: 11000000 INFO @ Sat, 03 Apr 2021 08:35:28: 5000000 INFO @ Sat, 03 Apr 2021 08:35:37: 12000000 INFO @ Sat, 03 Apr 2021 08:35:38: 8000000 INFO @ Sat, 03 Apr 2021 08:35:39: 6000000 INFO @ Sat, 03 Apr 2021 08:35:48: 13000000 INFO @ Sat, 03 Apr 2021 08:35:50: 7000000 INFO @ Sat, 03 Apr 2021 08:35:50: 9000000 INFO @ Sat, 03 Apr 2021 08:35:58: 14000000 INFO @ Sat, 03 Apr 2021 08:36:00: 8000000 INFO @ Sat, 03 Apr 2021 08:36:02: 10000000 INFO @ Sat, 03 Apr 2021 08:36:09: 15000000 INFO @ Sat, 03 Apr 2021 08:36:11: 9000000 INFO @ Sat, 03 Apr 2021 08:36:15: 11000000 INFO @ Sat, 03 Apr 2021 08:36:20: 16000000 INFO @ Sat, 03 Apr 2021 08:36:21: 10000000 INFO @ Sat, 03 Apr 2021 08:36:27: 12000000 INFO @ Sat, 03 Apr 2021 08:36:30: 17000000 INFO @ Sat, 03 Apr 2021 08:36:32: 11000000 INFO @ Sat, 03 Apr 2021 08:36:40: 13000000 INFO @ Sat, 03 Apr 2021 08:36:41: 18000000 INFO @ Sat, 03 Apr 2021 08:36:42: 12000000 INFO @ Sat, 03 Apr 2021 08:36:52: 19000000 INFO @ Sat, 03 Apr 2021 08:36:52: 14000000 INFO @ Sat, 03 Apr 2021 08:36:53: 13000000 INFO @ Sat, 03 Apr 2021 08:37:02: 20000000 INFO @ Sat, 03 Apr 2021 08:37:03: 14000000 INFO @ Sat, 03 Apr 2021 08:37:04: 15000000 INFO @ Sat, 03 Apr 2021 08:37:13: 21000000 INFO @ Sat, 03 Apr 2021 08:37:14: 15000000 INFO @ Sat, 03 Apr 2021 08:37:16: 16000000 INFO @ Sat, 03 Apr 2021 08:37:24: 22000000 INFO @ Sat, 03 Apr 2021 08:37:25: 16000000 INFO @ Sat, 03 Apr 2021 08:37:27: 17000000 INFO @ Sat, 03 Apr 2021 08:37:34: 23000000 INFO @ Sat, 03 Apr 2021 08:37:35: 17000000 INFO @ Sat, 03 Apr 2021 08:37:39: 18000000 INFO @ Sat, 03 Apr 2021 08:37:45: 24000000 INFO @ Sat, 03 Apr 2021 08:37:46: 18000000 INFO @ Sat, 03 Apr 2021 08:37:53: 19000000 INFO @ Sat, 03 Apr 2021 08:37:55: 25000000 INFO @ Sat, 03 Apr 2021 08:37:56: 19000000 INFO @ Sat, 03 Apr 2021 08:38:06: 20000000 INFO @ Sat, 03 Apr 2021 08:38:06: 26000000 INFO @ Sat, 03 Apr 2021 08:38:07: 20000000 INFO @ Sat, 03 Apr 2021 08:38:17: 27000000 INFO @ Sat, 03 Apr 2021 08:38:18: 21000000 INFO @ Sat, 03 Apr 2021 08:38:19: 21000000 INFO @ Sat, 03 Apr 2021 08:38:28: 28000000 INFO @ Sat, 03 Apr 2021 08:38:28: 22000000 INFO @ Sat, 03 Apr 2021 08:38:31: 22000000 INFO @ Sat, 03 Apr 2021 08:38:38: 29000000 INFO @ Sat, 03 Apr 2021 08:38:39: 23000000 INFO @ Sat, 03 Apr 2021 08:38:44: 23000000 INFO @ Sat, 03 Apr 2021 08:38:49: 30000000 INFO @ Sat, 03 Apr 2021 08:38:49: 24000000 INFO @ Sat, 03 Apr 2021 08:38:55: 24000000 INFO @ Sat, 03 Apr 2021 08:38:59: 31000000 INFO @ Sat, 03 Apr 2021 08:39:00: 25000000 INFO @ Sat, 03 Apr 2021 08:39:06: 25000000 INFO @ Sat, 03 Apr 2021 08:39:10: 32000000 INFO @ Sat, 03 Apr 2021 08:39:10: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:39:16: 26000000 INFO @ Sat, 03 Apr 2021 08:39:19: 33000000 INFO @ Sat, 03 Apr 2021 08:39:22: 27000000 INFO @ Sat, 03 Apr 2021 08:39:26: 27000000 INFO @ Sat, 03 Apr 2021 08:39:29: 34000000 INFO @ Sat, 03 Apr 2021 08:39:32: 28000000 INFO @ Sat, 03 Apr 2021 08:39:36: 28000000 INFO @ Sat, 03 Apr 2021 08:39:39: 35000000 INFO @ Sat, 03 Apr 2021 08:39:42: 29000000 INFO @ Sat, 03 Apr 2021 08:39:45: 29000000 INFO @ Sat, 03 Apr 2021 08:39:50: 36000000 INFO @ Sat, 03 Apr 2021 08:39:53: 30000000 INFO @ Sat, 03 Apr 2021 08:39:55: 30000000 INFO @ Sat, 03 Apr 2021 08:40:00: 37000000 INFO @ Sat, 03 Apr 2021 08:40:03: 31000000 INFO @ Sat, 03 Apr 2021 08:40:05: 31000000 INFO @ Sat, 03 Apr 2021 08:40:11: 38000000 INFO @ Sat, 03 Apr 2021 08:40:14: 32000000 INFO @ Sat, 03 Apr 2021 08:40:14: 32000000 INFO @ Sat, 03 Apr 2021 08:40:20: 39000000 INFO @ Sat, 03 Apr 2021 08:40:24: 33000000 INFO @ Sat, 03 Apr 2021 08:40:25: 33000000 INFO @ Sat, 03 Apr 2021 08:40:31: 40000000 INFO @ Sat, 03 Apr 2021 08:40:34: 34000000 INFO @ Sat, 03 Apr 2021 08:40:34: 34000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:40:41: 41000000 INFO @ Sat, 03 Apr 2021 08:40:44: 35000000 INFO @ Sat, 03 Apr 2021 08:40:44: 35000000 INFO @ Sat, 03 Apr 2021 08:40:51: 42000000 INFO @ Sat, 03 Apr 2021 08:40:54: 36000000 INFO @ Sat, 03 Apr 2021 08:40:54: 36000000 INFO @ Sat, 03 Apr 2021 08:41:02: 43000000 INFO @ Sat, 03 Apr 2021 08:41:04: 37000000 INFO @ Sat, 03 Apr 2021 08:41:05: 37000000 INFO @ Sat, 03 Apr 2021 08:41:12: 44000000 INFO @ Sat, 03 Apr 2021 08:41:14: 38000000 INFO @ Sat, 03 Apr 2021 08:41:15: 38000000 INFO @ Sat, 03 Apr 2021 08:41:22: 45000000 INFO @ Sat, 03 Apr 2021 08:41:24: 39000000 INFO @ Sat, 03 Apr 2021 08:41:25: 39000000 INFO @ Sat, 03 Apr 2021 08:41:34: 40000000 INFO @ Sat, 03 Apr 2021 08:41:34: 46000000 INFO @ Sat, 03 Apr 2021 08:41:35: 40000000 INFO @ Sat, 03 Apr 2021 08:41:44: 41000000 INFO @ Sat, 03 Apr 2021 08:41:45: 47000000 INFO @ Sat, 03 Apr 2021 08:41:45: 41000000 INFO @ Sat, 03 Apr 2021 08:41:54: 42000000 INFO @ Sat, 03 Apr 2021 08:41:55: 48000000 INFO @ Sat, 03 Apr 2021 08:41:55: 42000000 INFO @ Sat, 03 Apr 2021 08:42:04: 43000000 INFO @ Sat, 03 Apr 2021 08:42:05: 49000000 INFO @ Sat, 03 Apr 2021 08:42:05: 43000000 INFO @ Sat, 03 Apr 2021 08:42:13: 44000000 INFO @ Sat, 03 Apr 2021 08:42:15: 50000000 INFO @ Sat, 03 Apr 2021 08:42:15: 44000000 INFO @ Sat, 03 Apr 2021 08:42:23: 45000000 INFO @ Sat, 03 Apr 2021 08:42:25: 51000000 INFO @ Sat, 03 Apr 2021 08:42:25: 45000000 INFO @ Sat, 03 Apr 2021 08:42:33: 46000000 INFO @ Sat, 03 Apr 2021 08:42:35: 52000000 INFO @ Sat, 03 Apr 2021 08:42:35: 46000000 INFO @ Sat, 03 Apr 2021 08:42:40: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:42:40: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:42:40: #1 total tags in treatment: 21551714 INFO @ Sat, 03 Apr 2021 08:42:40: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:42:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:42:40: #1 tags after filtering in treatment: 15581199 INFO @ Sat, 03 Apr 2021 08:42:40: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 03 Apr 2021 08:42:40: #1 finished! INFO @ Sat, 03 Apr 2021 08:42:40: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:42:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:42:41: #2 number of paired peaks: 188 WARNING @ Sat, 03 Apr 2021 08:42:41: Fewer paired peaks (188) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 188 pairs to build model! INFO @ Sat, 03 Apr 2021 08:42:41: start model_add_line... INFO @ Sat, 03 Apr 2021 08:42:41: start X-correlation... INFO @ Sat, 03 Apr 2021 08:42:41: end of X-cor INFO @ Sat, 03 Apr 2021 08:42:41: #2 finished! INFO @ Sat, 03 Apr 2021 08:42:41: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 08:42:41: #2 alternative fragment length(s) may be 4,102 bps INFO @ Sat, 03 Apr 2021 08:42:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.05_model.r WARNING @ Sat, 03 Apr 2021 08:42:42: #2 Since the d (102) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:42:42: #2 You may need to consider one of the other alternative d(s): 4,102 WARNING @ Sat, 03 Apr 2021 08:42:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:42:42: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:42:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:42:44: 47000000 INFO @ Sat, 03 Apr 2021 08:42:45: 47000000 INFO @ Sat, 03 Apr 2021 08:42:53: 48000000 INFO @ Sat, 03 Apr 2021 08:42:54: 48000000 INFO @ Sat, 03 Apr 2021 08:43:03: 49000000 INFO @ Sat, 03 Apr 2021 08:43:04: 49000000 INFO @ Sat, 03 Apr 2021 08:43:11: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:43:13: 50000000 INFO @ Sat, 03 Apr 2021 08:43:13: 50000000 INFO @ Sat, 03 Apr 2021 08:43:23: 51000000 INFO @ Sat, 03 Apr 2021 08:43:24: 51000000 INFO @ Sat, 03 Apr 2021 08:43:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:43:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:43:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.05_summits.bed INFO @ Sat, 03 Apr 2021 08:43:28: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (7074 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:43:32: 52000000 INFO @ Sat, 03 Apr 2021 08:43:33: 52000000 INFO @ Sat, 03 Apr 2021 08:43:37: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:43:37: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:43:37: #1 total tags in treatment: 21551714 INFO @ Sat, 03 Apr 2021 08:43:37: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:43:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:43:38: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:43:38: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:43:38: #1 total tags in treatment: 21551714 INFO @ Sat, 03 Apr 2021 08:43:38: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:43:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:43:38: #1 tags after filtering in treatment: 15581199 INFO @ Sat, 03 Apr 2021 08:43:38: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 03 Apr 2021 08:43:38: #1 finished! INFO @ Sat, 03 Apr 2021 08:43:38: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:43:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:43:38: #1 tags after filtering in treatment: 15581199 INFO @ Sat, 03 Apr 2021 08:43:38: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 03 Apr 2021 08:43:38: #1 finished! INFO @ Sat, 03 Apr 2021 08:43:38: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:43:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:43:39: #2 number of paired peaks: 188 WARNING @ Sat, 03 Apr 2021 08:43:39: Fewer paired peaks (188) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 188 pairs to build model! INFO @ Sat, 03 Apr 2021 08:43:39: start model_add_line... INFO @ Sat, 03 Apr 2021 08:43:39: start X-correlation... INFO @ Sat, 03 Apr 2021 08:43:39: #2 number of paired peaks: 188 WARNING @ Sat, 03 Apr 2021 08:43:39: Fewer paired peaks (188) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 188 pairs to build model! INFO @ Sat, 03 Apr 2021 08:43:39: start model_add_line... INFO @ Sat, 03 Apr 2021 08:43:39: end of X-cor INFO @ Sat, 03 Apr 2021 08:43:39: #2 finished! INFO @ Sat, 03 Apr 2021 08:43:39: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 08:43:39: #2 alternative fragment length(s) may be 4,102 bps INFO @ Sat, 03 Apr 2021 08:43:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.20_model.r WARNING @ Sat, 03 Apr 2021 08:43:39: #2 Since the d (102) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:43:39: #2 You may need to consider one of the other alternative d(s): 4,102 WARNING @ Sat, 03 Apr 2021 08:43:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:43:39: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:43:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:43:39: start X-correlation... INFO @ Sat, 03 Apr 2021 08:43:39: end of X-cor INFO @ Sat, 03 Apr 2021 08:43:39: #2 finished! INFO @ Sat, 03 Apr 2021 08:43:39: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 08:43:39: #2 alternative fragment length(s) may be 4,102 bps INFO @ Sat, 03 Apr 2021 08:43:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.10_model.r WARNING @ Sat, 03 Apr 2021 08:43:39: #2 Since the d (102) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:43:39: #2 You may need to consider one of the other alternative d(s): 4,102 WARNING @ Sat, 03 Apr 2021 08:43:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:43:39: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:43:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:44:08: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:44:08: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:44:23: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:44:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:44:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.10_summits.bed INFO @ Sat, 03 Apr 2021 08:44:24: Done! pass1 - making usageList (7 chroms): 20 millis pass2 - checking and writing primary data (3688 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:44:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:44:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:44:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029135/SRX3029135.20_summits.bed INFO @ Sat, 03 Apr 2021 08:44:24: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (1400 records, 4 fields): 5 millis CompletedMACS2peakCalling