Job ID = 12265604 SRX = SRX3029134 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:56:51 53096677 reads; of these: 53096677 (100.00%) were paired; of these: 20071764 (37.80%) aligned concordantly 0 times 28710537 (54.07%) aligned concordantly exactly 1 time 4314376 (8.13%) aligned concordantly >1 times ---- 20071764 pairs aligned concordantly 0 times; of these: 6127048 (30.53%) aligned discordantly 1 time ---- 13944716 pairs aligned 0 times concordantly or discordantly; of these: 27889432 mates make up the pairs; of these: 24927209 (89.38%) aligned 0 times 1354368 (4.86%) aligned exactly 1 time 1607855 (5.77%) aligned >1 times 76.53% overall alignment rate Time searching: 00:56:52 Overall time: 00:56:52 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7739970 / 38692788 = 0.2000 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:23:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:23:21: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:23:21: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:23:27: 1000000 INFO @ Sat, 03 Apr 2021 09:23:34: 2000000 INFO @ Sat, 03 Apr 2021 09:23:40: 3000000 INFO @ Sat, 03 Apr 2021 09:23:46: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:23:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:23:50: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:23:50: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:23:52: 5000000 INFO @ Sat, 03 Apr 2021 09:23:57: 1000000 INFO @ Sat, 03 Apr 2021 09:23:58: 6000000 INFO @ Sat, 03 Apr 2021 09:24:03: 2000000 INFO @ Sat, 03 Apr 2021 09:24:04: 7000000 INFO @ Sat, 03 Apr 2021 09:24:09: 3000000 INFO @ Sat, 03 Apr 2021 09:24:10: 8000000 INFO @ Sat, 03 Apr 2021 09:24:15: 4000000 INFO @ Sat, 03 Apr 2021 09:24:16: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:24:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:24:20: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:24:20: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:24:21: 5000000 INFO @ Sat, 03 Apr 2021 09:24:22: 10000000 INFO @ Sat, 03 Apr 2021 09:24:27: 1000000 INFO @ Sat, 03 Apr 2021 09:24:27: 6000000 INFO @ Sat, 03 Apr 2021 09:24:28: 11000000 INFO @ Sat, 03 Apr 2021 09:24:33: 7000000 INFO @ Sat, 03 Apr 2021 09:24:33: 2000000 INFO @ Sat, 03 Apr 2021 09:24:35: 12000000 INFO @ Sat, 03 Apr 2021 09:24:39: 8000000 INFO @ Sat, 03 Apr 2021 09:24:40: 3000000 INFO @ Sat, 03 Apr 2021 09:24:41: 13000000 INFO @ Sat, 03 Apr 2021 09:24:46: 9000000 INFO @ Sat, 03 Apr 2021 09:24:46: 4000000 INFO @ Sat, 03 Apr 2021 09:24:47: 14000000 INFO @ Sat, 03 Apr 2021 09:24:52: 10000000 INFO @ Sat, 03 Apr 2021 09:24:53: 5000000 INFO @ Sat, 03 Apr 2021 09:24:54: 15000000 INFO @ Sat, 03 Apr 2021 09:24:58: 11000000 INFO @ Sat, 03 Apr 2021 09:24:59: 6000000 INFO @ Sat, 03 Apr 2021 09:25:00: 16000000 INFO @ Sat, 03 Apr 2021 09:25:04: 12000000 INFO @ Sat, 03 Apr 2021 09:25:05: 7000000 INFO @ Sat, 03 Apr 2021 09:25:07: 17000000 INFO @ Sat, 03 Apr 2021 09:25:10: 13000000 INFO @ Sat, 03 Apr 2021 09:25:12: 8000000 INFO @ Sat, 03 Apr 2021 09:25:13: 18000000 INFO @ Sat, 03 Apr 2021 09:25:16: 14000000 INFO @ Sat, 03 Apr 2021 09:25:18: 9000000 INFO @ Sat, 03 Apr 2021 09:25:19: 19000000 INFO @ Sat, 03 Apr 2021 09:25:22: 15000000 INFO @ Sat, 03 Apr 2021 09:25:24: 10000000 INFO @ Sat, 03 Apr 2021 09:25:26: 20000000 INFO @ Sat, 03 Apr 2021 09:25:28: 16000000 INFO @ Sat, 03 Apr 2021 09:25:30: 11000000 INFO @ Sat, 03 Apr 2021 09:25:32: 21000000 INFO @ Sat, 03 Apr 2021 09:25:34: 17000000 INFO @ Sat, 03 Apr 2021 09:25:37: 12000000 INFO @ Sat, 03 Apr 2021 09:25:38: 22000000 INFO @ Sat, 03 Apr 2021 09:25:40: 18000000 INFO @ Sat, 03 Apr 2021 09:25:43: 13000000 INFO @ Sat, 03 Apr 2021 09:25:46: 23000000 INFO @ Sat, 03 Apr 2021 09:25:46: 19000000 INFO @ Sat, 03 Apr 2021 09:25:49: 14000000 INFO @ Sat, 03 Apr 2021 09:25:52: 20000000 INFO @ Sat, 03 Apr 2021 09:25:52: 24000000 INFO @ Sat, 03 Apr 2021 09:25:55: 15000000 INFO @ Sat, 03 Apr 2021 09:25:58: 21000000 INFO @ Sat, 03 Apr 2021 09:25:59: 25000000 INFO @ Sat, 03 Apr 2021 09:26:02: 16000000 INFO @ Sat, 03 Apr 2021 09:26:04: 22000000 INFO @ Sat, 03 Apr 2021 09:26:05: 26000000 INFO @ Sat, 03 Apr 2021 09:26:08: 17000000 INFO @ Sat, 03 Apr 2021 09:26:11: 23000000 INFO @ Sat, 03 Apr 2021 09:26:12: 27000000 INFO @ Sat, 03 Apr 2021 09:26:14: 18000000 INFO @ Sat, 03 Apr 2021 09:26:17: 24000000 INFO @ Sat, 03 Apr 2021 09:26:18: 28000000 INFO @ Sat, 03 Apr 2021 09:26:20: 19000000 INFO @ Sat, 03 Apr 2021 09:26:23: 25000000 INFO @ Sat, 03 Apr 2021 09:26:25: 29000000 INFO @ Sat, 03 Apr 2021 09:26:26: 20000000 INFO @ Sat, 03 Apr 2021 09:26:30: 26000000 INFO @ Sat, 03 Apr 2021 09:26:32: 30000000 INFO @ Sat, 03 Apr 2021 09:26:33: 21000000 INFO @ Sat, 03 Apr 2021 09:26:38: 27000000 INFO @ Sat, 03 Apr 2021 09:26:38: 31000000 INFO @ Sat, 03 Apr 2021 09:26:39: 22000000 INFO @ Sat, 03 Apr 2021 09:26:44: 28000000 INFO @ Sat, 03 Apr 2021 09:26:45: 32000000 INFO @ Sat, 03 Apr 2021 09:26:46: 23000000 INFO @ Sat, 03 Apr 2021 09:26:50: 29000000 INFO @ Sat, 03 Apr 2021 09:26:51: 33000000 INFO @ Sat, 03 Apr 2021 09:26:53: 24000000 INFO @ Sat, 03 Apr 2021 09:26:57: 30000000 INFO @ Sat, 03 Apr 2021 09:26:58: 34000000 INFO @ Sat, 03 Apr 2021 09:26:59: 25000000 INFO @ Sat, 03 Apr 2021 09:27:04: 31000000 INFO @ Sat, 03 Apr 2021 09:27:04: 35000000 INFO @ Sat, 03 Apr 2021 09:27:06: 26000000 INFO @ Sat, 03 Apr 2021 09:27:10: 32000000 INFO @ Sat, 03 Apr 2021 09:27:11: 36000000 INFO @ Sat, 03 Apr 2021 09:27:12: 27000000 INFO @ Sat, 03 Apr 2021 09:27:16: 33000000 INFO @ Sat, 03 Apr 2021 09:27:17: 37000000 INFO @ Sat, 03 Apr 2021 09:27:18: 28000000 INFO @ Sat, 03 Apr 2021 09:27:22: 34000000 INFO @ Sat, 03 Apr 2021 09:27:23: 38000000 INFO @ Sat, 03 Apr 2021 09:27:25: 29000000 INFO @ Sat, 03 Apr 2021 09:27:28: 35000000 INFO @ Sat, 03 Apr 2021 09:27:30: 39000000 INFO @ Sat, 03 Apr 2021 09:27:31: 30000000 INFO @ Sat, 03 Apr 2021 09:27:34: 36000000 INFO @ Sat, 03 Apr 2021 09:27:36: 40000000 INFO @ Sat, 03 Apr 2021 09:27:38: 31000000 INFO @ Sat, 03 Apr 2021 09:27:39: 37000000 INFO @ Sat, 03 Apr 2021 09:27:43: 41000000 INFO @ Sat, 03 Apr 2021 09:27:44: 32000000 INFO @ Sat, 03 Apr 2021 09:27:45: 38000000 INFO @ Sat, 03 Apr 2021 09:27:49: 42000000 INFO @ Sat, 03 Apr 2021 09:27:50: 33000000 INFO @ Sat, 03 Apr 2021 09:27:51: 39000000 INFO @ Sat, 03 Apr 2021 09:27:56: 43000000 INFO @ Sat, 03 Apr 2021 09:27:56: 34000000 INFO @ Sat, 03 Apr 2021 09:27:57: 40000000 INFO @ Sat, 03 Apr 2021 09:28:02: 44000000 INFO @ Sat, 03 Apr 2021 09:28:02: 35000000 INFO @ Sat, 03 Apr 2021 09:28:03: 41000000 INFO @ Sat, 03 Apr 2021 09:28:08: 45000000 INFO @ Sat, 03 Apr 2021 09:28:09: 36000000 INFO @ Sat, 03 Apr 2021 09:28:09: 42000000 INFO @ Sat, 03 Apr 2021 09:28:15: 46000000 INFO @ Sat, 03 Apr 2021 09:28:15: 37000000 INFO @ Sat, 03 Apr 2021 09:28:15: 43000000 INFO @ Sat, 03 Apr 2021 09:28:21: 47000000 INFO @ Sat, 03 Apr 2021 09:28:21: 44000000 INFO @ Sat, 03 Apr 2021 09:28:21: 38000000 INFO @ Sat, 03 Apr 2021 09:28:27: 48000000 INFO @ Sat, 03 Apr 2021 09:28:27: 45000000 INFO @ Sat, 03 Apr 2021 09:28:28: 39000000 INFO @ Sat, 03 Apr 2021 09:28:33: 46000000 INFO @ Sat, 03 Apr 2021 09:28:34: 49000000 INFO @ Sat, 03 Apr 2021 09:28:34: 40000000 INFO @ Sat, 03 Apr 2021 09:28:39: 47000000 INFO @ Sat, 03 Apr 2021 09:28:40: 50000000 INFO @ Sat, 03 Apr 2021 09:28:40: 41000000 INFO @ Sat, 03 Apr 2021 09:28:45: 48000000 INFO @ Sat, 03 Apr 2021 09:28:46: 51000000 INFO @ Sat, 03 Apr 2021 09:28:46: 42000000 INFO @ Sat, 03 Apr 2021 09:28:51: 49000000 INFO @ Sat, 03 Apr 2021 09:28:53: 52000000 INFO @ Sat, 03 Apr 2021 09:28:53: 43000000 INFO @ Sat, 03 Apr 2021 09:28:57: 50000000 INFO @ Sat, 03 Apr 2021 09:28:59: 53000000 INFO @ Sat, 03 Apr 2021 09:28:59: 44000000 INFO @ Sat, 03 Apr 2021 09:29:03: 51000000 INFO @ Sat, 03 Apr 2021 09:29:05: 54000000 INFO @ Sat, 03 Apr 2021 09:29:05: 45000000 INFO @ Sat, 03 Apr 2021 09:29:09: 52000000 INFO @ Sat, 03 Apr 2021 09:29:11: 55000000 INFO @ Sat, 03 Apr 2021 09:29:11: 46000000 INFO @ Sat, 03 Apr 2021 09:29:15: 53000000 INFO @ Sat, 03 Apr 2021 09:29:18: 56000000 INFO @ Sat, 03 Apr 2021 09:29:18: 47000000 INFO @ Sat, 03 Apr 2021 09:29:21: 54000000 INFO @ Sat, 03 Apr 2021 09:29:25: 57000000 INFO @ Sat, 03 Apr 2021 09:29:25: 48000000 INFO @ Sat, 03 Apr 2021 09:29:27: 55000000 INFO @ Sat, 03 Apr 2021 09:29:32: 58000000 INFO @ Sat, 03 Apr 2021 09:29:32: 49000000 INFO @ Sat, 03 Apr 2021 09:29:33: 56000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:29:38: 59000000 INFO @ Sat, 03 Apr 2021 09:29:39: 50000000 INFO @ Sat, 03 Apr 2021 09:29:39: 57000000 INFO @ Sat, 03 Apr 2021 09:29:45: 60000000 INFO @ Sat, 03 Apr 2021 09:29:46: 51000000 INFO @ Sat, 03 Apr 2021 09:29:46: 58000000 INFO @ Sat, 03 Apr 2021 09:29:52: 61000000 INFO @ Sat, 03 Apr 2021 09:29:53: 59000000 INFO @ Sat, 03 Apr 2021 09:29:53: 52000000 INFO @ Sat, 03 Apr 2021 09:29:59: 62000000 INFO @ Sat, 03 Apr 2021 09:30:00: 60000000 INFO @ Sat, 03 Apr 2021 09:30:00: 53000000 INFO @ Sat, 03 Apr 2021 09:30:07: 61000000 INFO @ Sat, 03 Apr 2021 09:30:07: 63000000 INFO @ Sat, 03 Apr 2021 09:30:07: 54000000 INFO @ Sat, 03 Apr 2021 09:30:13: 62000000 INFO @ Sat, 03 Apr 2021 09:30:14: 55000000 INFO @ Sat, 03 Apr 2021 09:30:14: 64000000 INFO @ Sat, 03 Apr 2021 09:30:21: 63000000 INFO @ Sat, 03 Apr 2021 09:30:22: 65000000 INFO @ Sat, 03 Apr 2021 09:30:22: 56000000 INFO @ Sat, 03 Apr 2021 09:30:27: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:30:27: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:30:27: #1 total tags in treatment: 26618198 INFO @ Sat, 03 Apr 2021 09:30:27: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:30:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:30:28: #1 tags after filtering in treatment: 18452861 INFO @ Sat, 03 Apr 2021 09:30:28: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 09:30:28: #1 finished! INFO @ Sat, 03 Apr 2021 09:30:28: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:30:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:30:28: 64000000 INFO @ Sat, 03 Apr 2021 09:30:29: #2 number of paired peaks: 131 WARNING @ Sat, 03 Apr 2021 09:30:29: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Sat, 03 Apr 2021 09:30:29: start model_add_line... INFO @ Sat, 03 Apr 2021 09:30:29: 57000000 INFO @ Sat, 03 Apr 2021 09:30:29: start X-correlation... INFO @ Sat, 03 Apr 2021 09:30:29: end of X-cor INFO @ Sat, 03 Apr 2021 09:30:29: #2 finished! INFO @ Sat, 03 Apr 2021 09:30:29: #2 predicted fragment length is 69 bps INFO @ Sat, 03 Apr 2021 09:30:29: #2 alternative fragment length(s) may be 3,69,105 bps INFO @ Sat, 03 Apr 2021 09:30:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.05_model.r WARNING @ Sat, 03 Apr 2021 09:30:29: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:30:29: #2 You may need to consider one of the other alternative d(s): 3,69,105 WARNING @ Sat, 03 Apr 2021 09:30:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:30:29: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:30:29: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:30:34: 65000000 INFO @ Sat, 03 Apr 2021 09:30:36: 58000000 INFO @ Sat, 03 Apr 2021 09:30:40: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:30:40: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:30:40: #1 total tags in treatment: 26618198 INFO @ Sat, 03 Apr 2021 09:30:40: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:30:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:30:40: #1 tags after filtering in treatment: 18452861 INFO @ Sat, 03 Apr 2021 09:30:40: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 09:30:40: #1 finished! INFO @ Sat, 03 Apr 2021 09:30:40: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:30:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:30:42: #2 number of paired peaks: 131 WARNING @ Sat, 03 Apr 2021 09:30:42: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Sat, 03 Apr 2021 09:30:42: start model_add_line... INFO @ Sat, 03 Apr 2021 09:30:42: start X-correlation... INFO @ Sat, 03 Apr 2021 09:30:42: end of X-cor INFO @ Sat, 03 Apr 2021 09:30:42: #2 finished! INFO @ Sat, 03 Apr 2021 09:30:42: #2 predicted fragment length is 69 bps INFO @ Sat, 03 Apr 2021 09:30:42: #2 alternative fragment length(s) may be 3,69,105 bps INFO @ Sat, 03 Apr 2021 09:30:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.10_model.r WARNING @ Sat, 03 Apr 2021 09:30:42: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:30:42: #2 You may need to consider one of the other alternative d(s): 3,69,105 WARNING @ Sat, 03 Apr 2021 09:30:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:30:42: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:30:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:30:43: 59000000 INFO @ Sat, 03 Apr 2021 09:30:50: 60000000 INFO @ Sat, 03 Apr 2021 09:30:58: 61000000 INFO @ Sat, 03 Apr 2021 09:31:01: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:31:05: 62000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:31:12: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:31:13: 63000000 INFO @ Sat, 03 Apr 2021 09:31:18: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:31:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:31:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.05_summits.bed INFO @ Sat, 03 Apr 2021 09:31:19: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (7602 records, 4 fields): 126 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:31:20: 64000000 INFO @ Sat, 03 Apr 2021 09:31:27: 65000000 INFO @ Sat, 03 Apr 2021 09:31:29: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:31:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:31:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.10_summits.bed INFO @ Sat, 03 Apr 2021 09:31:29: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (3541 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:31:33: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 09:31:33: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 09:31:33: #1 total tags in treatment: 26618198 INFO @ Sat, 03 Apr 2021 09:31:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:31:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:31:33: #1 tags after filtering in treatment: 18452861 INFO @ Sat, 03 Apr 2021 09:31:33: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 09:31:33: #1 finished! INFO @ Sat, 03 Apr 2021 09:31:33: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:31:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:31:35: #2 number of paired peaks: 131 WARNING @ Sat, 03 Apr 2021 09:31:35: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Sat, 03 Apr 2021 09:31:35: start model_add_line... INFO @ Sat, 03 Apr 2021 09:31:35: start X-correlation... INFO @ Sat, 03 Apr 2021 09:31:35: end of X-cor INFO @ Sat, 03 Apr 2021 09:31:35: #2 finished! INFO @ Sat, 03 Apr 2021 09:31:35: #2 predicted fragment length is 69 bps INFO @ Sat, 03 Apr 2021 09:31:35: #2 alternative fragment length(s) may be 3,69,105 bps INFO @ Sat, 03 Apr 2021 09:31:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.20_model.r WARNING @ Sat, 03 Apr 2021 09:31:35: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:31:35: #2 You may need to consider one of the other alternative d(s): 3,69,105 WARNING @ Sat, 03 Apr 2021 09:31:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:31:35: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:31:35: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:32:06: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:32:23: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:32:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:32:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029134/SRX3029134.20_summits.bed INFO @ Sat, 03 Apr 2021 09:32:23: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (934 records, 4 fields): 3 millis CompletedMACS2peakCalling