Job ID = 12265471 SRX = SRX3029126 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:45:33 43459436 reads; of these: 43459436 (100.00%) were paired; of these: 18784471 (43.22%) aligned concordantly 0 times 21535404 (49.55%) aligned concordantly exactly 1 time 3139561 (7.22%) aligned concordantly >1 times ---- 18784471 pairs aligned concordantly 0 times; of these: 4922399 (26.20%) aligned discordantly 1 time ---- 13862072 pairs aligned 0 times concordantly or discordantly; of these: 27724144 mates make up the pairs; of these: 25381286 (91.55%) aligned 0 times 1116491 (4.03%) aligned exactly 1 time 1226367 (4.42%) aligned >1 times 70.80% overall alignment rate Time searching: 00:45:33 Overall time: 00:45:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7048778 / 29249382 = 0.2410 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:28:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:28:28: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:28:28: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:28:36: 1000000 INFO @ Sat, 03 Apr 2021 08:28:44: 2000000 INFO @ Sat, 03 Apr 2021 08:28:52: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:28:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:28:58: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:28:58: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:29:00: 4000000 INFO @ Sat, 03 Apr 2021 08:29:05: 1000000 INFO @ Sat, 03 Apr 2021 08:29:08: 5000000 INFO @ Sat, 03 Apr 2021 08:29:12: 2000000 INFO @ Sat, 03 Apr 2021 08:29:15: 6000000 INFO @ Sat, 03 Apr 2021 08:29:19: 3000000 INFO @ Sat, 03 Apr 2021 08:29:23: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:29:26: 4000000 INFO @ Sat, 03 Apr 2021 08:29:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:29:28: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:29:28: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:29:30: 8000000 INFO @ Sat, 03 Apr 2021 08:29:34: 5000000 INFO @ Sat, 03 Apr 2021 08:29:35: 1000000 INFO @ Sat, 03 Apr 2021 08:29:38: 9000000 INFO @ Sat, 03 Apr 2021 08:29:42: 6000000 INFO @ Sat, 03 Apr 2021 08:29:43: 2000000 INFO @ Sat, 03 Apr 2021 08:29:46: 10000000 INFO @ Sat, 03 Apr 2021 08:29:49: 7000000 INFO @ Sat, 03 Apr 2021 08:29:50: 3000000 INFO @ Sat, 03 Apr 2021 08:29:54: 11000000 INFO @ Sat, 03 Apr 2021 08:29:56: 8000000 INFO @ Sat, 03 Apr 2021 08:29:57: 4000000 INFO @ Sat, 03 Apr 2021 08:30:02: 12000000 INFO @ Sat, 03 Apr 2021 08:30:04: 9000000 INFO @ Sat, 03 Apr 2021 08:30:05: 5000000 INFO @ Sat, 03 Apr 2021 08:30:09: 13000000 INFO @ Sat, 03 Apr 2021 08:30:11: 10000000 INFO @ Sat, 03 Apr 2021 08:30:12: 6000000 INFO @ Sat, 03 Apr 2021 08:30:17: 14000000 INFO @ Sat, 03 Apr 2021 08:30:18: 11000000 INFO @ Sat, 03 Apr 2021 08:30:19: 7000000 INFO @ Sat, 03 Apr 2021 08:30:25: 15000000 INFO @ Sat, 03 Apr 2021 08:30:26: 12000000 INFO @ Sat, 03 Apr 2021 08:30:26: 8000000 INFO @ Sat, 03 Apr 2021 08:30:33: 13000000 INFO @ Sat, 03 Apr 2021 08:30:33: 9000000 INFO @ Sat, 03 Apr 2021 08:30:33: 16000000 INFO @ Sat, 03 Apr 2021 08:30:40: 14000000 INFO @ Sat, 03 Apr 2021 08:30:40: 10000000 INFO @ Sat, 03 Apr 2021 08:30:42: 17000000 INFO @ Sat, 03 Apr 2021 08:30:48: 15000000 INFO @ Sat, 03 Apr 2021 08:30:48: 11000000 INFO @ Sat, 03 Apr 2021 08:30:50: 18000000 INFO @ Sat, 03 Apr 2021 08:30:55: 16000000 INFO @ Sat, 03 Apr 2021 08:30:55: 12000000 INFO @ Sat, 03 Apr 2021 08:30:58: 19000000 INFO @ Sat, 03 Apr 2021 08:31:02: 17000000 INFO @ Sat, 03 Apr 2021 08:31:02: 13000000 INFO @ Sat, 03 Apr 2021 08:31:06: 20000000 INFO @ Sat, 03 Apr 2021 08:31:09: 18000000 INFO @ Sat, 03 Apr 2021 08:31:09: 14000000 INFO @ Sat, 03 Apr 2021 08:31:14: 21000000 INFO @ Sat, 03 Apr 2021 08:31:16: 19000000 INFO @ Sat, 03 Apr 2021 08:31:16: 15000000 INFO @ Sat, 03 Apr 2021 08:31:21: 22000000 INFO @ Sat, 03 Apr 2021 08:31:23: 20000000 INFO @ Sat, 03 Apr 2021 08:31:23: 16000000 INFO @ Sat, 03 Apr 2021 08:31:28: 23000000 INFO @ Sat, 03 Apr 2021 08:31:30: 21000000 INFO @ Sat, 03 Apr 2021 08:31:30: 17000000 INFO @ Sat, 03 Apr 2021 08:31:35: 24000000 INFO @ Sat, 03 Apr 2021 08:31:37: 22000000 INFO @ Sat, 03 Apr 2021 08:31:37: 18000000 INFO @ Sat, 03 Apr 2021 08:31:41: 25000000 INFO @ Sat, 03 Apr 2021 08:31:44: 23000000 INFO @ Sat, 03 Apr 2021 08:31:45: 19000000 INFO @ Sat, 03 Apr 2021 08:31:47: 26000000 INFO @ Sat, 03 Apr 2021 08:31:51: 24000000 INFO @ Sat, 03 Apr 2021 08:31:51: 20000000 INFO @ Sat, 03 Apr 2021 08:31:53: 27000000 INFO @ Sat, 03 Apr 2021 08:31:58: 25000000 INFO @ Sat, 03 Apr 2021 08:31:58: 21000000 INFO @ Sat, 03 Apr 2021 08:32:00: 28000000 INFO @ Sat, 03 Apr 2021 08:32:05: 26000000 INFO @ Sat, 03 Apr 2021 08:32:05: 22000000 INFO @ Sat, 03 Apr 2021 08:32:06: 29000000 INFO @ Sat, 03 Apr 2021 08:32:11: 27000000 INFO @ Sat, 03 Apr 2021 08:32:12: 23000000 INFO @ Sat, 03 Apr 2021 08:32:12: 30000000 INFO @ Sat, 03 Apr 2021 08:32:18: 28000000 INFO @ Sat, 03 Apr 2021 08:32:18: 31000000 INFO @ Sat, 03 Apr 2021 08:32:18: 24000000 INFO @ Sat, 03 Apr 2021 08:32:24: 32000000 INFO @ Sat, 03 Apr 2021 08:32:25: 29000000 INFO @ Sat, 03 Apr 2021 08:32:26: 25000000 INFO @ Sat, 03 Apr 2021 08:32:30: 33000000 INFO @ Sat, 03 Apr 2021 08:32:32: 30000000 INFO @ Sat, 03 Apr 2021 08:32:33: 26000000 INFO @ Sat, 03 Apr 2021 08:32:37: 34000000 INFO @ Sat, 03 Apr 2021 08:32:39: 31000000 INFO @ Sat, 03 Apr 2021 08:32:40: 27000000 INFO @ Sat, 03 Apr 2021 08:32:43: 35000000 INFO @ Sat, 03 Apr 2021 08:32:46: 32000000 INFO @ Sat, 03 Apr 2021 08:32:47: 28000000 INFO @ Sat, 03 Apr 2021 08:32:49: 36000000 INFO @ Sat, 03 Apr 2021 08:32:53: 33000000 INFO @ Sat, 03 Apr 2021 08:32:54: 29000000 INFO @ Sat, 03 Apr 2021 08:32:55: 37000000 INFO @ Sat, 03 Apr 2021 08:33:01: 34000000 INFO @ Sat, 03 Apr 2021 08:33:01: 30000000 INFO @ Sat, 03 Apr 2021 08:33:01: 38000000 INFO @ Sat, 03 Apr 2021 08:33:08: 35000000 INFO @ Sat, 03 Apr 2021 08:33:08: 31000000 INFO @ Sat, 03 Apr 2021 08:33:08: 39000000 INFO @ Sat, 03 Apr 2021 08:33:15: 40000000 INFO @ Sat, 03 Apr 2021 08:33:15: 36000000 INFO @ Sat, 03 Apr 2021 08:33:15: 32000000 INFO @ Sat, 03 Apr 2021 08:33:21: 41000000 INFO @ Sat, 03 Apr 2021 08:33:22: 37000000 INFO @ Sat, 03 Apr 2021 08:33:23: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:33:27: 42000000 INFO @ Sat, 03 Apr 2021 08:33:29: 38000000 INFO @ Sat, 03 Apr 2021 08:33:30: 34000000 INFO @ Sat, 03 Apr 2021 08:33:34: 43000000 INFO @ Sat, 03 Apr 2021 08:33:36: 39000000 INFO @ Sat, 03 Apr 2021 08:33:36: 35000000 INFO @ Sat, 03 Apr 2021 08:33:40: 44000000 INFO @ Sat, 03 Apr 2021 08:33:43: 40000000 INFO @ Sat, 03 Apr 2021 08:33:43: 36000000 INFO @ Sat, 03 Apr 2021 08:33:47: 45000000 INFO @ Sat, 03 Apr 2021 08:33:49: 41000000 INFO @ Sat, 03 Apr 2021 08:33:50: 37000000 INFO @ Sat, 03 Apr 2021 08:33:54: 46000000 INFO @ Sat, 03 Apr 2021 08:33:56: 42000000 INFO @ Sat, 03 Apr 2021 08:33:57: 38000000 INFO @ Sat, 03 Apr 2021 08:34:00: 47000000 INFO @ Sat, 03 Apr 2021 08:34:03: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:34:03: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:34:03: #1 total tags in treatment: 18914541 INFO @ Sat, 03 Apr 2021 08:34:03: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:34:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:34:03: #1 tags after filtering in treatment: 13381121 INFO @ Sat, 03 Apr 2021 08:34:03: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 08:34:03: #1 finished! INFO @ Sat, 03 Apr 2021 08:34:03: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:34:03: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:34:03: 43000000 INFO @ Sat, 03 Apr 2021 08:34:04: #2 number of paired peaks: 281 WARNING @ Sat, 03 Apr 2021 08:34:04: Fewer paired peaks (281) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 281 pairs to build model! INFO @ Sat, 03 Apr 2021 08:34:04: start model_add_line... INFO @ Sat, 03 Apr 2021 08:34:04: start X-correlation... INFO @ Sat, 03 Apr 2021 08:34:04: end of X-cor INFO @ Sat, 03 Apr 2021 08:34:04: #2 finished! INFO @ Sat, 03 Apr 2021 08:34:04: #2 predicted fragment length is 103 bps INFO @ Sat, 03 Apr 2021 08:34:04: #2 alternative fragment length(s) may be 103,598 bps INFO @ Sat, 03 Apr 2021 08:34:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.05_model.r WARNING @ Sat, 03 Apr 2021 08:34:04: #2 Since the d (103) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:34:04: #2 You may need to consider one of the other alternative d(s): 103,598 WARNING @ Sat, 03 Apr 2021 08:34:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:34:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:34:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:34:05: 39000000 INFO @ Sat, 03 Apr 2021 08:34:10: 44000000 INFO @ Sat, 03 Apr 2021 08:34:11: 40000000 INFO @ Sat, 03 Apr 2021 08:34:17: 45000000 INFO @ Sat, 03 Apr 2021 08:34:18: 41000000 INFO @ Sat, 03 Apr 2021 08:34:23: 46000000 INFO @ Sat, 03 Apr 2021 08:34:24: 42000000 INFO @ Sat, 03 Apr 2021 08:34:29: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:34:30: 47000000 INFO @ Sat, 03 Apr 2021 08:34:31: 43000000 INFO @ Sat, 03 Apr 2021 08:34:33: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:34:33: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:34:33: #1 total tags in treatment: 18914541 INFO @ Sat, 03 Apr 2021 08:34:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:34:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:34:33: #1 tags after filtering in treatment: 13381121 INFO @ Sat, 03 Apr 2021 08:34:33: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 08:34:33: #1 finished! INFO @ Sat, 03 Apr 2021 08:34:33: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:34:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:34:34: #2 number of paired peaks: 281 WARNING @ Sat, 03 Apr 2021 08:34:34: Fewer paired peaks (281) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 281 pairs to build model! INFO @ Sat, 03 Apr 2021 08:34:34: start model_add_line... INFO @ Sat, 03 Apr 2021 08:34:34: start X-correlation... INFO @ Sat, 03 Apr 2021 08:34:34: end of X-cor INFO @ Sat, 03 Apr 2021 08:34:34: #2 finished! INFO @ Sat, 03 Apr 2021 08:34:34: #2 predicted fragment length is 103 bps INFO @ Sat, 03 Apr 2021 08:34:34: #2 alternative fragment length(s) may be 103,598 bps INFO @ Sat, 03 Apr 2021 08:34:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.10_model.r WARNING @ Sat, 03 Apr 2021 08:34:34: #2 Since the d (103) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:34:34: #2 You may need to consider one of the other alternative d(s): 103,598 WARNING @ Sat, 03 Apr 2021 08:34:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:34:34: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:34:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:34:37: 44000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:34:43: 45000000 INFO @ Sat, 03 Apr 2021 08:34:44: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:34:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:34:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.05_summits.bed INFO @ Sat, 03 Apr 2021 08:34:44: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (9268 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:34:49: 46000000 INFO @ Sat, 03 Apr 2021 08:34:55: 47000000 INFO @ Sat, 03 Apr 2021 08:34:59: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:34:59: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:34:59: #1 total tags in treatment: 18914541 INFO @ Sat, 03 Apr 2021 08:34:59: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:34:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:34:59: #1 tags after filtering in treatment: 13381121 INFO @ Sat, 03 Apr 2021 08:34:59: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 08:34:59: #1 finished! INFO @ Sat, 03 Apr 2021 08:34:59: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:34:59: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:35:00: #2 number of paired peaks: 281 WARNING @ Sat, 03 Apr 2021 08:35:00: Fewer paired peaks (281) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 281 pairs to build model! INFO @ Sat, 03 Apr 2021 08:35:00: start model_add_line... INFO @ Sat, 03 Apr 2021 08:35:00: start X-correlation... INFO @ Sat, 03 Apr 2021 08:35:00: end of X-cor INFO @ Sat, 03 Apr 2021 08:35:00: #2 finished! INFO @ Sat, 03 Apr 2021 08:35:00: #2 predicted fragment length is 103 bps INFO @ Sat, 03 Apr 2021 08:35:00: #2 alternative fragment length(s) may be 103,598 bps INFO @ Sat, 03 Apr 2021 08:35:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.20_model.r WARNING @ Sat, 03 Apr 2021 08:35:00: #2 Since the d (103) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:35:00: #2 You may need to consider one of the other alternative d(s): 103,598 WARNING @ Sat, 03 Apr 2021 08:35:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:35:00: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:35:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:35:00: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:35:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:35:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:35:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.10_summits.bed INFO @ Sat, 03 Apr 2021 08:35:15: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (5431 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:35:26: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:35:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:35:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:35:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX3029126/SRX3029126.20_summits.bed INFO @ Sat, 03 Apr 2021 08:35:40: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2215 records, 4 fields): 4 millis CompletedMACS2peakCalling