Job ID = 6367206 SRX = SRX2978710 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-15T23:11:46 prefetch.2.10.7: 1) Downloading 'SRR5799217'... 2020-06-15T23:11:46 prefetch.2.10.7: Downloading via HTTPS... 2020-06-15T23:14:27 prefetch.2.10.7: HTTPS download succeed 2020-06-15T23:14:27 prefetch.2.10.7: 1) 'SRR5799217' was downloaded successfully 2020-06-15T23:14:27 prefetch.2.10.7: 'SRR5799217' has 0 unresolved dependencies Read 27258444 spots for SRR5799217/SRR5799217.sra Written 27258444 spots for SRR5799217/SRR5799217.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:22:55 27258444 reads; of these: 27258444 (100.00%) were paired; of these: 1013699 (3.72%) aligned concordantly 0 times 22500219 (82.54%) aligned concordantly exactly 1 time 3744526 (13.74%) aligned concordantly >1 times ---- 1013699 pairs aligned concordantly 0 times; of these: 512911 (50.60%) aligned discordantly 1 time ---- 500788 pairs aligned 0 times concordantly or discordantly; of these: 1001576 mates make up the pairs; of these: 626567 (62.56%) aligned 0 times 221727 (22.14%) aligned exactly 1 time 153282 (15.30%) aligned >1 times 98.85% overall alignment rate Time searching: 00:22:55 Overall time: 00:22:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 425029 / 26740369 = 0.0159 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 08:52:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 08:52:33: #1 read tag files... INFO @ Tue, 16 Jun 2020 08:52:33: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 08:52:40: 1000000 INFO @ Tue, 16 Jun 2020 08:52:47: 2000000 INFO @ Tue, 16 Jun 2020 08:52:54: 3000000 INFO @ Tue, 16 Jun 2020 08:53:00: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 08:53:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 08:53:04: #1 read tag files... INFO @ Tue, 16 Jun 2020 08:53:04: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 08:53:07: 5000000 INFO @ Tue, 16 Jun 2020 08:53:11: 1000000 INFO @ Tue, 16 Jun 2020 08:53:15: 6000000 INFO @ Tue, 16 Jun 2020 08:53:19: 2000000 INFO @ Tue, 16 Jun 2020 08:53:23: 7000000 INFO @ Tue, 16 Jun 2020 08:53:27: 3000000 INFO @ Tue, 16 Jun 2020 08:53:30: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 08:53:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 08:53:33: #1 read tag files... INFO @ Tue, 16 Jun 2020 08:53:33: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 08:53:34: 4000000 INFO @ Tue, 16 Jun 2020 08:53:38: 9000000 INFO @ Tue, 16 Jun 2020 08:53:40: 1000000 INFO @ Tue, 16 Jun 2020 08:53:42: 5000000 INFO @ Tue, 16 Jun 2020 08:53:46: 10000000 INFO @ Tue, 16 Jun 2020 08:53:47: 2000000 INFO @ Tue, 16 Jun 2020 08:53:50: 6000000 INFO @ Tue, 16 Jun 2020 08:53:54: 11000000 INFO @ Tue, 16 Jun 2020 08:53:54: 3000000 INFO @ Tue, 16 Jun 2020 08:53:58: 7000000 INFO @ Tue, 16 Jun 2020 08:54:01: 4000000 INFO @ Tue, 16 Jun 2020 08:54:02: 12000000 INFO @ Tue, 16 Jun 2020 08:54:06: 8000000 INFO @ Tue, 16 Jun 2020 08:54:08: 5000000 INFO @ Tue, 16 Jun 2020 08:54:09: 13000000 INFO @ Tue, 16 Jun 2020 08:54:13: 9000000 INFO @ Tue, 16 Jun 2020 08:54:15: 6000000 INFO @ Tue, 16 Jun 2020 08:54:17: 14000000 INFO @ Tue, 16 Jun 2020 08:54:21: 10000000 INFO @ Tue, 16 Jun 2020 08:54:21: 7000000 INFO @ Tue, 16 Jun 2020 08:54:25: 15000000 INFO @ Tue, 16 Jun 2020 08:54:28: 8000000 INFO @ Tue, 16 Jun 2020 08:54:29: 11000000 INFO @ Tue, 16 Jun 2020 08:54:33: 16000000 INFO @ Tue, 16 Jun 2020 08:54:35: 9000000 INFO @ Tue, 16 Jun 2020 08:54:37: 12000000 INFO @ Tue, 16 Jun 2020 08:54:41: 17000000 INFO @ Tue, 16 Jun 2020 08:54:42: 10000000 INFO @ Tue, 16 Jun 2020 08:54:45: 13000000 INFO @ Tue, 16 Jun 2020 08:54:49: 11000000 INFO @ Tue, 16 Jun 2020 08:54:49: 18000000 INFO @ Tue, 16 Jun 2020 08:54:52: 14000000 INFO @ Tue, 16 Jun 2020 08:54:55: 12000000 INFO @ Tue, 16 Jun 2020 08:54:57: 19000000 INFO @ Tue, 16 Jun 2020 08:55:00: 15000000 INFO @ Tue, 16 Jun 2020 08:55:02: 13000000 INFO @ Tue, 16 Jun 2020 08:55:04: 20000000 INFO @ Tue, 16 Jun 2020 08:55:08: 16000000 INFO @ Tue, 16 Jun 2020 08:55:09: 14000000 INFO @ Tue, 16 Jun 2020 08:55:12: 21000000 INFO @ Tue, 16 Jun 2020 08:55:16: 17000000 INFO @ Tue, 16 Jun 2020 08:55:16: 15000000 INFO @ Tue, 16 Jun 2020 08:55:20: 22000000 INFO @ Tue, 16 Jun 2020 08:55:23: 16000000 INFO @ Tue, 16 Jun 2020 08:55:24: 18000000 INFO @ Tue, 16 Jun 2020 08:55:28: 23000000 INFO @ Tue, 16 Jun 2020 08:55:30: 17000000 INFO @ Tue, 16 Jun 2020 08:55:31: 19000000 INFO @ Tue, 16 Jun 2020 08:55:36: 24000000 INFO @ Tue, 16 Jun 2020 08:55:36: 18000000 INFO @ Tue, 16 Jun 2020 08:55:39: 20000000 INFO @ Tue, 16 Jun 2020 08:55:43: 19000000 INFO @ Tue, 16 Jun 2020 08:55:43: 25000000 INFO @ Tue, 16 Jun 2020 08:55:47: 21000000 INFO @ Tue, 16 Jun 2020 08:55:50: 20000000 INFO @ Tue, 16 Jun 2020 08:55:51: 26000000 INFO @ Tue, 16 Jun 2020 08:55:54: 22000000 INFO @ Tue, 16 Jun 2020 08:55:57: 21000000 INFO @ Tue, 16 Jun 2020 08:55:59: 27000000 INFO @ Tue, 16 Jun 2020 08:56:02: 23000000 INFO @ Tue, 16 Jun 2020 08:56:04: 22000000 INFO @ Tue, 16 Jun 2020 08:56:07: 28000000 INFO @ Tue, 16 Jun 2020 08:56:10: 24000000 INFO @ Tue, 16 Jun 2020 08:56:11: 23000000 INFO @ Tue, 16 Jun 2020 08:56:15: 29000000 INFO @ Tue, 16 Jun 2020 08:56:18: 24000000 INFO @ Tue, 16 Jun 2020 08:56:18: 25000000 INFO @ Tue, 16 Jun 2020 08:56:23: 30000000 INFO @ Tue, 16 Jun 2020 08:56:24: 25000000 INFO @ Tue, 16 Jun 2020 08:56:25: 26000000 INFO @ Tue, 16 Jun 2020 08:56:30: 31000000 INFO @ Tue, 16 Jun 2020 08:56:31: 26000000 INFO @ Tue, 16 Jun 2020 08:56:33: 27000000 INFO @ Tue, 16 Jun 2020 08:56:38: 32000000 INFO @ Tue, 16 Jun 2020 08:56:38: 27000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 08:56:41: 28000000 INFO @ Tue, 16 Jun 2020 08:56:45: 28000000 INFO @ Tue, 16 Jun 2020 08:56:46: 33000000 INFO @ Tue, 16 Jun 2020 08:56:49: 29000000 INFO @ Tue, 16 Jun 2020 08:56:52: 29000000 INFO @ Tue, 16 Jun 2020 08:56:54: 34000000 INFO @ Tue, 16 Jun 2020 08:56:57: 30000000 INFO @ Tue, 16 Jun 2020 08:57:00: 30000000 INFO @ Tue, 16 Jun 2020 08:57:02: 35000000 INFO @ Tue, 16 Jun 2020 08:57:04: 31000000 INFO @ Tue, 16 Jun 2020 08:57:07: 31000000 INFO @ Tue, 16 Jun 2020 08:57:10: 36000000 INFO @ Tue, 16 Jun 2020 08:57:12: 32000000 INFO @ Tue, 16 Jun 2020 08:57:14: 32000000 INFO @ Tue, 16 Jun 2020 08:57:17: 37000000 INFO @ Tue, 16 Jun 2020 08:57:20: 33000000 INFO @ Tue, 16 Jun 2020 08:57:21: 33000000 INFO @ Tue, 16 Jun 2020 08:57:25: 38000000 INFO @ Tue, 16 Jun 2020 08:57:28: 34000000 INFO @ Tue, 16 Jun 2020 08:57:29: 34000000 INFO @ Tue, 16 Jun 2020 08:57:33: 39000000 INFO @ Tue, 16 Jun 2020 08:57:35: 35000000 INFO @ Tue, 16 Jun 2020 08:57:36: 35000000 INFO @ Tue, 16 Jun 2020 08:57:41: 40000000 INFO @ Tue, 16 Jun 2020 08:57:43: 36000000 INFO @ Tue, 16 Jun 2020 08:57:44: 36000000 INFO @ Tue, 16 Jun 2020 08:57:49: 41000000 INFO @ Tue, 16 Jun 2020 08:57:51: 37000000 INFO @ Tue, 16 Jun 2020 08:57:52: 37000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 08:57:57: 42000000 INFO @ Tue, 16 Jun 2020 08:57:59: 38000000 INFO @ Tue, 16 Jun 2020 08:58:00: 38000000 INFO @ Tue, 16 Jun 2020 08:58:04: 43000000 INFO @ Tue, 16 Jun 2020 08:58:07: 39000000 INFO @ Tue, 16 Jun 2020 08:58:08: 39000000 INFO @ Tue, 16 Jun 2020 08:58:12: 44000000 INFO @ Tue, 16 Jun 2020 08:58:14: 40000000 INFO @ Tue, 16 Jun 2020 08:58:15: 40000000 INFO @ Tue, 16 Jun 2020 08:58:20: 45000000 INFO @ Tue, 16 Jun 2020 08:58:22: 41000000 INFO @ Tue, 16 Jun 2020 08:58:23: 41000000 INFO @ Tue, 16 Jun 2020 08:58:28: 46000000 INFO @ Tue, 16 Jun 2020 08:58:30: 42000000 INFO @ Tue, 16 Jun 2020 08:58:31: 42000000 INFO @ Tue, 16 Jun 2020 08:58:36: 47000000 INFO @ Tue, 16 Jun 2020 08:58:38: 43000000 INFO @ Tue, 16 Jun 2020 08:58:39: 43000000 INFO @ Tue, 16 Jun 2020 08:58:43: 48000000 INFO @ Tue, 16 Jun 2020 08:58:46: 44000000 INFO @ Tue, 16 Jun 2020 08:58:47: 44000000 INFO @ Tue, 16 Jun 2020 08:58:51: 49000000 INFO @ Tue, 16 Jun 2020 08:58:54: 45000000 INFO @ Tue, 16 Jun 2020 08:58:55: 45000000 INFO @ Tue, 16 Jun 2020 08:58:59: 50000000 INFO @ Tue, 16 Jun 2020 08:59:02: 46000000 INFO @ Tue, 16 Jun 2020 08:59:03: 46000000 INFO @ Tue, 16 Jun 2020 08:59:07: 51000000 INFO @ Tue, 16 Jun 2020 08:59:10: 47000000 INFO @ Tue, 16 Jun 2020 08:59:11: 47000000 INFO @ Tue, 16 Jun 2020 08:59:15: 52000000 INFO @ Tue, 16 Jun 2020 08:59:18: 48000000 INFO @ Tue, 16 Jun 2020 08:59:19: 48000000 INFO @ Tue, 16 Jun 2020 08:59:22: 53000000 INFO @ Tue, 16 Jun 2020 08:59:23: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 08:59:23: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 08:59:23: #1 total tags in treatment: 25822815 INFO @ Tue, 16 Jun 2020 08:59:23: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 08:59:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 08:59:23: #1 tags after filtering in treatment: 22752491 INFO @ Tue, 16 Jun 2020 08:59:23: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 16 Jun 2020 08:59:23: #1 finished! INFO @ Tue, 16 Jun 2020 08:59:23: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 08:59:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 08:59:25: #2 number of paired peaks: 192 WARNING @ Tue, 16 Jun 2020 08:59:25: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Tue, 16 Jun 2020 08:59:25: start model_add_line... INFO @ Tue, 16 Jun 2020 08:59:25: start X-correlation... INFO @ Tue, 16 Jun 2020 08:59:25: end of X-cor INFO @ Tue, 16 Jun 2020 08:59:25: #2 finished! INFO @ Tue, 16 Jun 2020 08:59:25: #2 predicted fragment length is 61 bps INFO @ Tue, 16 Jun 2020 08:59:25: #2 alternative fragment length(s) may be 3,61,121 bps INFO @ Tue, 16 Jun 2020 08:59:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.05_model.r WARNING @ Tue, 16 Jun 2020 08:59:25: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 08:59:25: #2 You may need to consider one of the other alternative d(s): 3,61,121 WARNING @ Tue, 16 Jun 2020 08:59:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 08:59:25: #3 Call peaks... INFO @ Tue, 16 Jun 2020 08:59:25: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 08:59:25: 49000000 INFO @ Tue, 16 Jun 2020 08:59:26: 49000000 INFO @ Tue, 16 Jun 2020 08:59:33: 50000000 INFO @ Tue, 16 Jun 2020 08:59:34: 50000000 INFO @ Tue, 16 Jun 2020 08:59:41: 51000000 INFO @ Tue, 16 Jun 2020 08:59:42: 51000000 INFO @ Tue, 16 Jun 2020 08:59:49: 52000000 INFO @ Tue, 16 Jun 2020 08:59:50: 52000000 INFO @ Tue, 16 Jun 2020 08:59:56: 53000000 INFO @ Tue, 16 Jun 2020 08:59:57: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 08:59:57: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 08:59:57: #1 total tags in treatment: 25822815 INFO @ Tue, 16 Jun 2020 08:59:57: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 08:59:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 08:59:57: 53000000 INFO @ Tue, 16 Jun 2020 08:59:57: #1 tags after filtering in treatment: 22752491 INFO @ Tue, 16 Jun 2020 08:59:57: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 16 Jun 2020 08:59:57: #1 finished! INFO @ Tue, 16 Jun 2020 08:59:57: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 08:59:57: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 08:59:58: #1 tag size is determined as 50 bps INFO @ Tue, 16 Jun 2020 08:59:58: #1 tag size = 50 INFO @ Tue, 16 Jun 2020 08:59:58: #1 total tags in treatment: 25822815 INFO @ Tue, 16 Jun 2020 08:59:58: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 08:59:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 08:59:58: #1 tags after filtering in treatment: 22752491 INFO @ Tue, 16 Jun 2020 08:59:58: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 16 Jun 2020 08:59:58: #1 finished! INFO @ Tue, 16 Jun 2020 08:59:58: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 08:59:58: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 08:59:59: #2 number of paired peaks: 192 WARNING @ Tue, 16 Jun 2020 08:59:59: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Tue, 16 Jun 2020 08:59:59: start model_add_line... INFO @ Tue, 16 Jun 2020 08:59:59: start X-correlation... INFO @ Tue, 16 Jun 2020 08:59:59: end of X-cor INFO @ Tue, 16 Jun 2020 08:59:59: #2 finished! INFO @ Tue, 16 Jun 2020 08:59:59: #2 predicted fragment length is 61 bps INFO @ Tue, 16 Jun 2020 08:59:59: #2 alternative fragment length(s) may be 3,61,121 bps INFO @ Tue, 16 Jun 2020 08:59:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.10_model.r WARNING @ Tue, 16 Jun 2020 08:59:59: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 08:59:59: #2 You may need to consider one of the other alternative d(s): 3,61,121 WARNING @ Tue, 16 Jun 2020 08:59:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 08:59:59: #3 Call peaks... INFO @ Tue, 16 Jun 2020 08:59:59: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 08:59:59: #2 number of paired peaks: 192 WARNING @ Tue, 16 Jun 2020 08:59:59: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Tue, 16 Jun 2020 08:59:59: start model_add_line... INFO @ Tue, 16 Jun 2020 08:59:59: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:00:00: start X-correlation... INFO @ Tue, 16 Jun 2020 09:00:00: end of X-cor INFO @ Tue, 16 Jun 2020 09:00:00: #2 finished! INFO @ Tue, 16 Jun 2020 09:00:00: #2 predicted fragment length is 61 bps INFO @ Tue, 16 Jun 2020 09:00:00: #2 alternative fragment length(s) may be 3,61,121 bps INFO @ Tue, 16 Jun 2020 09:00:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.20_model.r WARNING @ Tue, 16 Jun 2020 09:00:00: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 09:00:00: #2 You may need to consider one of the other alternative d(s): 3,61,121 WARNING @ Tue, 16 Jun 2020 09:00:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 09:00:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 09:00:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 09:00:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.05_peaks.xls INFO @ Tue, 16 Jun 2020 09:00:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:00:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.05_summits.bed INFO @ Tue, 16 Jun 2020 09:00:16: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (628 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 09:00:33: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:00:34: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 09:00:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.10_peaks.xls INFO @ Tue, 16 Jun 2020 09:00:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:00:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.10_summits.bed INFO @ Tue, 16 Jun 2020 09:00:50: Done! INFO @ Tue, 16 Jun 2020 09:00:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.20_peaks.xls INFO @ Tue, 16 Jun 2020 09:00:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 09:00:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX2978710/SRX2978710.20_summits.bed INFO @ Tue, 16 Jun 2020 09:00:50: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (409 records, 4 fields): 1 millis CompletedMACS2peakCalling pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (178 records, 4 fields): 1 millis CompletedMACS2peakCalling