Job ID = 6507735 SRX = SRX1995023 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-26T13:47:16 prefetch.2.10.7: 1) Downloading 'SRR3993955'... 2020-06-26T13:47:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-26T13:50:21 prefetch.2.10.7: HTTPS download succeed 2020-06-26T13:50:21 prefetch.2.10.7: 1) 'SRR3993955' was downloaded successfully Read 23770760 spots for SRR3993955/SRR3993955.sra Written 23770760 spots for SRR3993955/SRR3993955.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:20:37 23770760 reads; of these: 23770760 (100.00%) were paired; of these: 1376863 (5.79%) aligned concordantly 0 times 19232905 (80.91%) aligned concordantly exactly 1 time 3160992 (13.30%) aligned concordantly >1 times ---- 1376863 pairs aligned concordantly 0 times; of these: 861771 (62.59%) aligned discordantly 1 time ---- 515092 pairs aligned 0 times concordantly or discordantly; of these: 1030184 mates make up the pairs; of these: 505984 (49.12%) aligned 0 times 293066 (28.45%) aligned exactly 1 time 231134 (22.44%) aligned >1 times 98.94% overall alignment rate Time searching: 00:20:37 Overall time: 00:20:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 329421 / 23241575 = 0.0142 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:25:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:25:06: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:25:06: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:25:11: 1000000 INFO @ Fri, 26 Jun 2020 23:25:16: 2000000 INFO @ Fri, 26 Jun 2020 23:25:21: 3000000 INFO @ Fri, 26 Jun 2020 23:25:26: 4000000 INFO @ Fri, 26 Jun 2020 23:25:30: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:25:35: 6000000 INFO @ Fri, 26 Jun 2020 23:25:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:25:36: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:25:36: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:25:39: 7000000 INFO @ Fri, 26 Jun 2020 23:25:41: 1000000 INFO @ Fri, 26 Jun 2020 23:25:44: 8000000 INFO @ Fri, 26 Jun 2020 23:25:47: 2000000 INFO @ Fri, 26 Jun 2020 23:25:49: 9000000 INFO @ Fri, 26 Jun 2020 23:25:52: 3000000 INFO @ Fri, 26 Jun 2020 23:25:53: 10000000 INFO @ Fri, 26 Jun 2020 23:25:56: 4000000 INFO @ Fri, 26 Jun 2020 23:25:58: 11000000 INFO @ Fri, 26 Jun 2020 23:26:01: 5000000 INFO @ Fri, 26 Jun 2020 23:26:02: 12000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 23:26:06: 6000000 INFO @ Fri, 26 Jun 2020 23:26:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 23:26:06: #1 read tag files... INFO @ Fri, 26 Jun 2020 23:26:06: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 23:26:07: 13000000 INFO @ Fri, 26 Jun 2020 23:26:10: 7000000 INFO @ Fri, 26 Jun 2020 23:26:11: 1000000 INFO @ Fri, 26 Jun 2020 23:26:11: 14000000 INFO @ Fri, 26 Jun 2020 23:26:15: 8000000 INFO @ Fri, 26 Jun 2020 23:26:16: 15000000 INFO @ Fri, 26 Jun 2020 23:26:16: 2000000 INFO @ Fri, 26 Jun 2020 23:26:20: 9000000 INFO @ Fri, 26 Jun 2020 23:26:20: 16000000 INFO @ Fri, 26 Jun 2020 23:26:20: 3000000 INFO @ Fri, 26 Jun 2020 23:26:24: 10000000 INFO @ Fri, 26 Jun 2020 23:26:25: 17000000 INFO @ Fri, 26 Jun 2020 23:26:25: 4000000 INFO @ Fri, 26 Jun 2020 23:26:29: 11000000 INFO @ Fri, 26 Jun 2020 23:26:29: 18000000 INFO @ Fri, 26 Jun 2020 23:26:29: 5000000 INFO @ Fri, 26 Jun 2020 23:26:34: 19000000 INFO @ Fri, 26 Jun 2020 23:26:34: 12000000 INFO @ Fri, 26 Jun 2020 23:26:34: 6000000 INFO @ Fri, 26 Jun 2020 23:26:38: 20000000 INFO @ Fri, 26 Jun 2020 23:26:38: 7000000 INFO @ Fri, 26 Jun 2020 23:26:38: 13000000 INFO @ Fri, 26 Jun 2020 23:26:43: 21000000 INFO @ Fri, 26 Jun 2020 23:26:43: 8000000 INFO @ Fri, 26 Jun 2020 23:26:43: 14000000 INFO @ Fri, 26 Jun 2020 23:26:47: 22000000 INFO @ Fri, 26 Jun 2020 23:26:47: 9000000 INFO @ Fri, 26 Jun 2020 23:26:48: 15000000 INFO @ Fri, 26 Jun 2020 23:26:52: 23000000 INFO @ Fri, 26 Jun 2020 23:26:52: 10000000 INFO @ Fri, 26 Jun 2020 23:26:53: 16000000 INFO @ Fri, 26 Jun 2020 23:26:56: 24000000 INFO @ Fri, 26 Jun 2020 23:26:56: 11000000 INFO @ Fri, 26 Jun 2020 23:26:57: 17000000 INFO @ Fri, 26 Jun 2020 23:27:01: 25000000 INFO @ Fri, 26 Jun 2020 23:27:01: 12000000 INFO @ Fri, 26 Jun 2020 23:27:02: 18000000 INFO @ Fri, 26 Jun 2020 23:27:05: 26000000 INFO @ Fri, 26 Jun 2020 23:27:05: 13000000 INFO @ Fri, 26 Jun 2020 23:27:07: 19000000 INFO @ Fri, 26 Jun 2020 23:27:10: 27000000 INFO @ Fri, 26 Jun 2020 23:27:10: 14000000 INFO @ Fri, 26 Jun 2020 23:27:11: 20000000 INFO @ Fri, 26 Jun 2020 23:27:14: 28000000 INFO @ Fri, 26 Jun 2020 23:27:14: 15000000 INFO @ Fri, 26 Jun 2020 23:27:16: 21000000 INFO @ Fri, 26 Jun 2020 23:27:19: 29000000 INFO @ Fri, 26 Jun 2020 23:27:19: 16000000 INFO @ Fri, 26 Jun 2020 23:27:21: 22000000 INFO @ Fri, 26 Jun 2020 23:27:23: 30000000 INFO @ Fri, 26 Jun 2020 23:27:23: 17000000 INFO @ Fri, 26 Jun 2020 23:27:26: 23000000 INFO @ Fri, 26 Jun 2020 23:27:28: 18000000 INFO @ Fri, 26 Jun 2020 23:27:28: 31000000 INFO @ Fri, 26 Jun 2020 23:27:30: 24000000 INFO @ Fri, 26 Jun 2020 23:27:32: 19000000 INFO @ Fri, 26 Jun 2020 23:27:32: 32000000 INFO @ Fri, 26 Jun 2020 23:27:35: 25000000 INFO @ Fri, 26 Jun 2020 23:27:37: 20000000 INFO @ Fri, 26 Jun 2020 23:27:37: 33000000 INFO @ Fri, 26 Jun 2020 23:27:40: 26000000 INFO @ Fri, 26 Jun 2020 23:27:41: 21000000 INFO @ Fri, 26 Jun 2020 23:27:41: 34000000 INFO @ Fri, 26 Jun 2020 23:27:45: 27000000 INFO @ Fri, 26 Jun 2020 23:27:46: 22000000 INFO @ Fri, 26 Jun 2020 23:27:46: 35000000 INFO @ Fri, 26 Jun 2020 23:27:49: 28000000 INFO @ Fri, 26 Jun 2020 23:27:50: 23000000 INFO @ Fri, 26 Jun 2020 23:27:50: 36000000 INFO @ Fri, 26 Jun 2020 23:27:54: 29000000 INFO @ Fri, 26 Jun 2020 23:27:55: 24000000 INFO @ Fri, 26 Jun 2020 23:27:55: 37000000 INFO @ Fri, 26 Jun 2020 23:27:59: 30000000 INFO @ Fri, 26 Jun 2020 23:27:59: 38000000 INFO @ Fri, 26 Jun 2020 23:27:59: 25000000 INFO @ Fri, 26 Jun 2020 23:28:04: 31000000 INFO @ Fri, 26 Jun 2020 23:28:04: 26000000 INFO @ Fri, 26 Jun 2020 23:28:04: 39000000 INFO @ Fri, 26 Jun 2020 23:28:08: 40000000 INFO @ Fri, 26 Jun 2020 23:28:08: 27000000 INFO @ Fri, 26 Jun 2020 23:28:08: 32000000 INFO @ Fri, 26 Jun 2020 23:28:13: 41000000 INFO @ Fri, 26 Jun 2020 23:28:13: 28000000 INFO @ Fri, 26 Jun 2020 23:28:13: 33000000 INFO @ Fri, 26 Jun 2020 23:28:17: 42000000 INFO @ Fri, 26 Jun 2020 23:28:17: 29000000 INFO @ Fri, 26 Jun 2020 23:28:18: 34000000 INFO @ Fri, 26 Jun 2020 23:28:22: 43000000 INFO @ Fri, 26 Jun 2020 23:28:22: 30000000 INFO @ Fri, 26 Jun 2020 23:28:22: 35000000 INFO @ Fri, 26 Jun 2020 23:28:26: 44000000 INFO @ Fri, 26 Jun 2020 23:28:26: 31000000 INFO @ Fri, 26 Jun 2020 23:28:27: 36000000 INFO @ Fri, 26 Jun 2020 23:28:30: 45000000 INFO @ Fri, 26 Jun 2020 23:28:31: 32000000 INFO @ Fri, 26 Jun 2020 23:28:31: 37000000 INFO @ Fri, 26 Jun 2020 23:28:35: 46000000 INFO @ Fri, 26 Jun 2020 23:28:35: 33000000 INFO @ Fri, 26 Jun 2020 23:28:36: 38000000 INFO @ Fri, 26 Jun 2020 23:28:37: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 23:28:37: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 23:28:37: #1 total tags in treatment: 22069096 INFO @ Fri, 26 Jun 2020 23:28:37: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 23:28:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 23:28:37: #1 tags after filtering in treatment: 19855325 INFO @ Fri, 26 Jun 2020 23:28:37: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 23:28:37: #1 finished! INFO @ Fri, 26 Jun 2020 23:28:37: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 23:28:37: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 23:28:38: #2 number of paired peaks: 253 WARNING @ Fri, 26 Jun 2020 23:28:38: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Fri, 26 Jun 2020 23:28:38: start model_add_line... INFO @ Fri, 26 Jun 2020 23:28:38: start X-correlation... INFO @ Fri, 26 Jun 2020 23:28:38: end of X-cor INFO @ Fri, 26 Jun 2020 23:28:38: #2 finished! INFO @ Fri, 26 Jun 2020 23:28:38: #2 predicted fragment length is 119 bps INFO @ Fri, 26 Jun 2020 23:28:38: #2 alternative fragment length(s) may be 3,119 bps INFO @ Fri, 26 Jun 2020 23:28:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.05_model.r INFO @ Fri, 26 Jun 2020 23:28:38: #3 Call peaks... INFO @ Fri, 26 Jun 2020 23:28:38: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 23:28:40: 34000000 INFO @ Fri, 26 Jun 2020 23:28:40: 39000000 INFO @ Fri, 26 Jun 2020 23:28:44: 35000000 INFO @ Fri, 26 Jun 2020 23:28:45: 40000000 INFO @ Fri, 26 Jun 2020 23:28:48: 36000000 INFO @ Fri, 26 Jun 2020 23:28:50: 41000000 INFO @ Fri, 26 Jun 2020 23:28:53: 37000000 INFO @ Fri, 26 Jun 2020 23:28:54: 42000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 26 Jun 2020 23:28:57: 38000000 INFO @ Fri, 26 Jun 2020 23:28:59: 43000000 INFO @ Fri, 26 Jun 2020 23:29:02: 39000000 INFO @ Fri, 26 Jun 2020 23:29:03: 44000000 INFO @ Fri, 26 Jun 2020 23:29:06: 40000000 INFO @ Fri, 26 Jun 2020 23:29:08: 45000000 INFO @ Fri, 26 Jun 2020 23:29:11: 41000000 INFO @ Fri, 26 Jun 2020 23:29:13: 46000000 INFO @ Fri, 26 Jun 2020 23:29:14: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 23:29:15: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 23:29:15: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 23:29:15: #1 total tags in treatment: 22069096 INFO @ Fri, 26 Jun 2020 23:29:15: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 23:29:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 23:29:15: #1 tags after filtering in treatment: 19855325 INFO @ Fri, 26 Jun 2020 23:29:15: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 23:29:15: #1 finished! INFO @ Fri, 26 Jun 2020 23:29:15: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 23:29:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 23:29:16: 42000000 INFO @ Fri, 26 Jun 2020 23:29:16: #2 number of paired peaks: 253 WARNING @ Fri, 26 Jun 2020 23:29:16: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Fri, 26 Jun 2020 23:29:16: start model_add_line... INFO @ Fri, 26 Jun 2020 23:29:16: start X-correlation... INFO @ Fri, 26 Jun 2020 23:29:16: end of X-cor INFO @ Fri, 26 Jun 2020 23:29:16: #2 finished! INFO @ Fri, 26 Jun 2020 23:29:16: #2 predicted fragment length is 119 bps INFO @ Fri, 26 Jun 2020 23:29:16: #2 alternative fragment length(s) may be 3,119 bps INFO @ Fri, 26 Jun 2020 23:29:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.10_model.r INFO @ Fri, 26 Jun 2020 23:29:16: #3 Call peaks... INFO @ Fri, 26 Jun 2020 23:29:16: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 23:29:20: 43000000 INFO @ Fri, 26 Jun 2020 23:29:24: 44000000 INFO @ Fri, 26 Jun 2020 23:29:29: 45000000 INFO @ Fri, 26 Jun 2020 23:29:30: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.05_peaks.xls INFO @ Fri, 26 Jun 2020 23:29:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.05_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 23:29:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.05_summits.bed INFO @ Fri, 26 Jun 2020 23:29:30: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (474 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 23:29:33: 46000000 INFO @ Fri, 26 Jun 2020 23:29:35: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 23:29:35: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 23:29:35: #1 total tags in treatment: 22069096 INFO @ Fri, 26 Jun 2020 23:29:35: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 23:29:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 23:29:36: #1 tags after filtering in treatment: 19855325 INFO @ Fri, 26 Jun 2020 23:29:36: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 23:29:36: #1 finished! INFO @ Fri, 26 Jun 2020 23:29:36: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 23:29:36: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 23:29:37: #2 number of paired peaks: 253 WARNING @ Fri, 26 Jun 2020 23:29:37: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Fri, 26 Jun 2020 23:29:37: start model_add_line... INFO @ Fri, 26 Jun 2020 23:29:37: start X-correlation... INFO @ Fri, 26 Jun 2020 23:29:37: end of X-cor INFO @ Fri, 26 Jun 2020 23:29:37: #2 finished! INFO @ Fri, 26 Jun 2020 23:29:37: #2 predicted fragment length is 119 bps INFO @ Fri, 26 Jun 2020 23:29:37: #2 alternative fragment length(s) may be 3,119 bps INFO @ Fri, 26 Jun 2020 23:29:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.20_model.r INFO @ Fri, 26 Jun 2020 23:29:37: #3 Call peaks... INFO @ Fri, 26 Jun 2020 23:29:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 23:29:51: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 23:30:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.10_peaks.xls INFO @ Fri, 26 Jun 2020 23:30:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.10_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 23:30:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.10_summits.bed INFO @ Fri, 26 Jun 2020 23:30:07: Done! BigWig に変換しました。 pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (355 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 23:30:12: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 23:30:29: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.20_peaks.xls INFO @ Fri, 26 Jun 2020 23:30:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.20_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 23:30:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX1995023/SRX1995023.20_summits.bed INFO @ Fri, 26 Jun 2020 23:30:29: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (221 records, 4 fields): 1 millis CompletedMACS2peakCalling