Job ID = 14158768 SRX = SRX10342576 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:47:14 43166998 reads; of these: 43166998 (100.00%) were paired; of these: 6383568 (14.79%) aligned concordantly 0 times 27441243 (63.57%) aligned concordantly exactly 1 time 9342187 (21.64%) aligned concordantly >1 times ---- 6383568 pairs aligned concordantly 0 times; of these: 2003726 (31.39%) aligned discordantly 1 time ---- 4379842 pairs aligned 0 times concordantly or discordantly; of these: 8759684 mates make up the pairs; of these: 6305668 (71.99%) aligned 0 times 1132480 (12.93%) aligned exactly 1 time 1321536 (15.09%) aligned >1 times 92.70% overall alignment rate Time searching: 00:47:14 Overall time: 00:47:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 11908927 / 38646491 = 0.3082 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 18:49:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 18:49:05: #1 read tag files... INFO @ Wed, 08 Dec 2021 18:49:05: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 18:49:11: 1000000 INFO @ Wed, 08 Dec 2021 18:49:17: 2000000 INFO @ Wed, 08 Dec 2021 18:49:23: 3000000 INFO @ Wed, 08 Dec 2021 18:49:29: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 18:49:34: 5000000 INFO @ Wed, 08 Dec 2021 18:49:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 18:49:35: #1 read tag files... INFO @ Wed, 08 Dec 2021 18:49:35: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 18:49:41: 6000000 INFO @ Wed, 08 Dec 2021 18:49:41: 1000000 INFO @ Wed, 08 Dec 2021 18:49:48: 7000000 INFO @ Wed, 08 Dec 2021 18:49:48: 2000000 INFO @ Wed, 08 Dec 2021 18:49:55: 8000000 INFO @ Wed, 08 Dec 2021 18:49:55: 3000000 INFO @ Wed, 08 Dec 2021 18:50:01: 9000000 INFO @ Wed, 08 Dec 2021 18:50:01: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 18:50:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 18:50:05: #1 read tag files... INFO @ Wed, 08 Dec 2021 18:50:05: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 18:50:08: 10000000 INFO @ Wed, 08 Dec 2021 18:50:08: 5000000 INFO @ Wed, 08 Dec 2021 18:50:11: 1000000 INFO @ Wed, 08 Dec 2021 18:50:15: 11000000 INFO @ Wed, 08 Dec 2021 18:50:15: 6000000 INFO @ Wed, 08 Dec 2021 18:50:18: 2000000 INFO @ Wed, 08 Dec 2021 18:50:22: 12000000 INFO @ Wed, 08 Dec 2021 18:50:22: 7000000 INFO @ Wed, 08 Dec 2021 18:50:25: 3000000 INFO @ Wed, 08 Dec 2021 18:50:28: 13000000 INFO @ Wed, 08 Dec 2021 18:50:29: 8000000 INFO @ Wed, 08 Dec 2021 18:50:31: 4000000 INFO @ Wed, 08 Dec 2021 18:50:35: 14000000 INFO @ Wed, 08 Dec 2021 18:50:35: 9000000 INFO @ Wed, 08 Dec 2021 18:50:38: 5000000 INFO @ Wed, 08 Dec 2021 18:50:42: 15000000 INFO @ Wed, 08 Dec 2021 18:50:42: 10000000 INFO @ Wed, 08 Dec 2021 18:50:45: 6000000 INFO @ Wed, 08 Dec 2021 18:50:49: 16000000 INFO @ Wed, 08 Dec 2021 18:50:49: 11000000 INFO @ Wed, 08 Dec 2021 18:50:51: 7000000 INFO @ Wed, 08 Dec 2021 18:50:55: 17000000 INFO @ Wed, 08 Dec 2021 18:50:56: 12000000 INFO @ Wed, 08 Dec 2021 18:50:58: 8000000 INFO @ Wed, 08 Dec 2021 18:51:02: 13000000 INFO @ Wed, 08 Dec 2021 18:51:02: 18000000 INFO @ Wed, 08 Dec 2021 18:51:05: 9000000 INFO @ Wed, 08 Dec 2021 18:51:09: 14000000 INFO @ Wed, 08 Dec 2021 18:51:09: 19000000 INFO @ Wed, 08 Dec 2021 18:51:11: 10000000 INFO @ Wed, 08 Dec 2021 18:51:16: 15000000 INFO @ Wed, 08 Dec 2021 18:51:16: 20000000 INFO @ Wed, 08 Dec 2021 18:51:18: 11000000 INFO @ Wed, 08 Dec 2021 18:51:22: 16000000 INFO @ Wed, 08 Dec 2021 18:51:23: 21000000 INFO @ Wed, 08 Dec 2021 18:51:24: 12000000 INFO @ Wed, 08 Dec 2021 18:51:29: 17000000 INFO @ Wed, 08 Dec 2021 18:51:29: 22000000 INFO @ Wed, 08 Dec 2021 18:51:31: 13000000 INFO @ Wed, 08 Dec 2021 18:51:36: 18000000 INFO @ Wed, 08 Dec 2021 18:51:36: 23000000 INFO @ Wed, 08 Dec 2021 18:51:38: 14000000 INFO @ Wed, 08 Dec 2021 18:51:43: 19000000 INFO @ Wed, 08 Dec 2021 18:51:43: 24000000 INFO @ Wed, 08 Dec 2021 18:51:44: 15000000 INFO @ Wed, 08 Dec 2021 18:51:50: 20000000 INFO @ Wed, 08 Dec 2021 18:51:50: 25000000 INFO @ Wed, 08 Dec 2021 18:51:51: 16000000 INFO @ Wed, 08 Dec 2021 18:51:56: 21000000 INFO @ Wed, 08 Dec 2021 18:51:57: 26000000 INFO @ Wed, 08 Dec 2021 18:51:58: 17000000 INFO @ Wed, 08 Dec 2021 18:52:03: 22000000 INFO @ Wed, 08 Dec 2021 18:52:03: 27000000 INFO @ Wed, 08 Dec 2021 18:52:04: 18000000 INFO @ Wed, 08 Dec 2021 18:52:10: 23000000 INFO @ Wed, 08 Dec 2021 18:52:10: 28000000 INFO @ Wed, 08 Dec 2021 18:52:11: 19000000 INFO @ Wed, 08 Dec 2021 18:52:16: 24000000 INFO @ Wed, 08 Dec 2021 18:52:17: 29000000 INFO @ Wed, 08 Dec 2021 18:52:18: 20000000 INFO @ Wed, 08 Dec 2021 18:52:23: 25000000 INFO @ Wed, 08 Dec 2021 18:52:24: 30000000 INFO @ Wed, 08 Dec 2021 18:52:24: 21000000 INFO @ Wed, 08 Dec 2021 18:52:30: 26000000 INFO @ Wed, 08 Dec 2021 18:52:30: 31000000 INFO @ Wed, 08 Dec 2021 18:52:31: 22000000 INFO @ Wed, 08 Dec 2021 18:52:37: 27000000 INFO @ Wed, 08 Dec 2021 18:52:37: 32000000 INFO @ Wed, 08 Dec 2021 18:52:38: 23000000 INFO @ Wed, 08 Dec 2021 18:52:43: 28000000 INFO @ Wed, 08 Dec 2021 18:52:44: 33000000 INFO @ Wed, 08 Dec 2021 18:52:44: 24000000 INFO @ Wed, 08 Dec 2021 18:52:50: 34000000 INFO @ Wed, 08 Dec 2021 18:52:50: 29000000 INFO @ Wed, 08 Dec 2021 18:52:51: 25000000 INFO @ Wed, 08 Dec 2021 18:52:57: 35000000 INFO @ Wed, 08 Dec 2021 18:52:57: 30000000 INFO @ Wed, 08 Dec 2021 18:52:58: 26000000 INFO @ Wed, 08 Dec 2021 18:53:04: 36000000 INFO @ Wed, 08 Dec 2021 18:53:04: 31000000 INFO @ Wed, 08 Dec 2021 18:53:04: 27000000 INFO @ Wed, 08 Dec 2021 18:53:10: 37000000 INFO @ Wed, 08 Dec 2021 18:53:10: 32000000 INFO @ Wed, 08 Dec 2021 18:53:11: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 18:53:17: 33000000 INFO @ Wed, 08 Dec 2021 18:53:17: 38000000 INFO @ Wed, 08 Dec 2021 18:53:18: 29000000 INFO @ Wed, 08 Dec 2021 18:53:23: 34000000 INFO @ Wed, 08 Dec 2021 18:53:24: 39000000 INFO @ Wed, 08 Dec 2021 18:53:24: 30000000 INFO @ Wed, 08 Dec 2021 18:53:30: 35000000 INFO @ Wed, 08 Dec 2021 18:53:31: 40000000 INFO @ Wed, 08 Dec 2021 18:53:31: 31000000 INFO @ Wed, 08 Dec 2021 18:53:37: 36000000 INFO @ Wed, 08 Dec 2021 18:53:38: 41000000 INFO @ Wed, 08 Dec 2021 18:53:38: 32000000 INFO @ Wed, 08 Dec 2021 18:53:44: 37000000 INFO @ Wed, 08 Dec 2021 18:53:44: 33000000 INFO @ Wed, 08 Dec 2021 18:53:44: 42000000 INFO @ Wed, 08 Dec 2021 18:53:50: 34000000 INFO @ Wed, 08 Dec 2021 18:53:50: 38000000 INFO @ Wed, 08 Dec 2021 18:53:51: 43000000 INFO @ Wed, 08 Dec 2021 18:53:57: 35000000 INFO @ Wed, 08 Dec 2021 18:53:57: 39000000 INFO @ Wed, 08 Dec 2021 18:53:58: 44000000 INFO @ Wed, 08 Dec 2021 18:54:04: 36000000 INFO @ Wed, 08 Dec 2021 18:54:04: 40000000 INFO @ Wed, 08 Dec 2021 18:54:05: 45000000 INFO @ Wed, 08 Dec 2021 18:54:10: 37000000 INFO @ Wed, 08 Dec 2021 18:54:11: 41000000 INFO @ Wed, 08 Dec 2021 18:54:12: 46000000 INFO @ Wed, 08 Dec 2021 18:54:17: 38000000 INFO @ Wed, 08 Dec 2021 18:54:17: 42000000 INFO @ Wed, 08 Dec 2021 18:54:18: 47000000 INFO @ Wed, 08 Dec 2021 18:54:24: 39000000 INFO @ Wed, 08 Dec 2021 18:54:24: 43000000 INFO @ Wed, 08 Dec 2021 18:54:25: 48000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 18:54:30: 40000000 INFO @ Wed, 08 Dec 2021 18:54:31: 44000000 INFO @ Wed, 08 Dec 2021 18:54:32: 49000000 INFO @ Wed, 08 Dec 2021 18:54:37: 41000000 INFO @ Wed, 08 Dec 2021 18:54:38: 45000000 INFO @ Wed, 08 Dec 2021 18:54:39: 50000000 INFO @ Wed, 08 Dec 2021 18:54:44: 42000000 INFO @ Wed, 08 Dec 2021 18:54:44: 46000000 INFO @ Wed, 08 Dec 2021 18:54:46: 51000000 INFO @ Wed, 08 Dec 2021 18:54:50: 43000000 INFO @ Wed, 08 Dec 2021 18:54:51: 47000000 INFO @ Wed, 08 Dec 2021 18:54:52: 52000000 INFO @ Wed, 08 Dec 2021 18:54:57: 44000000 INFO @ Wed, 08 Dec 2021 18:54:58: 48000000 INFO @ Wed, 08 Dec 2021 18:54:59: 53000000 INFO @ Wed, 08 Dec 2021 18:55:04: 45000000 INFO @ Wed, 08 Dec 2021 18:55:05: 49000000 INFO @ Wed, 08 Dec 2021 18:55:06: 54000000 INFO @ Wed, 08 Dec 2021 18:55:10: 46000000 INFO @ Wed, 08 Dec 2021 18:55:11: 50000000 INFO @ Wed, 08 Dec 2021 18:55:13: 55000000 INFO @ Wed, 08 Dec 2021 18:55:17: 47000000 INFO @ Wed, 08 Dec 2021 18:55:18: 51000000 INFO @ Wed, 08 Dec 2021 18:55:20: 56000000 INFO @ Wed, 08 Dec 2021 18:55:21: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 18:55:21: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 18:55:21: #1 total tags in treatment: 25234414 INFO @ Wed, 08 Dec 2021 18:55:21: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 18:55:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 18:55:21: #1 tags after filtering in treatment: 19987800 INFO @ Wed, 08 Dec 2021 18:55:21: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 08 Dec 2021 18:55:21: #1 finished! INFO @ Wed, 08 Dec 2021 18:55:21: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 18:55:21: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 18:55:23: #2 number of paired peaks: 594 WARNING @ Wed, 08 Dec 2021 18:55:23: Fewer paired peaks (594) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 594 pairs to build model! INFO @ Wed, 08 Dec 2021 18:55:23: start model_add_line... INFO @ Wed, 08 Dec 2021 18:55:23: start X-correlation... INFO @ Wed, 08 Dec 2021 18:55:23: end of X-cor INFO @ Wed, 08 Dec 2021 18:55:23: #2 finished! INFO @ Wed, 08 Dec 2021 18:55:23: #2 predicted fragment length is 119 bps INFO @ Wed, 08 Dec 2021 18:55:23: #2 alternative fragment length(s) may be 2,101,119 bps INFO @ Wed, 08 Dec 2021 18:55:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.05_model.r INFO @ Wed, 08 Dec 2021 18:55:23: #3 Call peaks... INFO @ Wed, 08 Dec 2021 18:55:23: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 18:55:24: 48000000 INFO @ Wed, 08 Dec 2021 18:55:25: 52000000 INFO @ Wed, 08 Dec 2021 18:55:30: 49000000 INFO @ Wed, 08 Dec 2021 18:55:32: 53000000 INFO @ Wed, 08 Dec 2021 18:55:37: 50000000 INFO @ Wed, 08 Dec 2021 18:55:38: 54000000 INFO @ Wed, 08 Dec 2021 18:55:43: 51000000 INFO @ Wed, 08 Dec 2021 18:55:45: 55000000 INFO @ Wed, 08 Dec 2021 18:55:50: 52000000 INFO @ Wed, 08 Dec 2021 18:55:52: 56000000 INFO @ Wed, 08 Dec 2021 18:55:53: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 18:55:53: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 18:55:53: #1 total tags in treatment: 25234414 INFO @ Wed, 08 Dec 2021 18:55:53: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 18:55:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 18:55:54: #1 tags after filtering in treatment: 19987800 INFO @ Wed, 08 Dec 2021 18:55:54: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 08 Dec 2021 18:55:54: #1 finished! INFO @ Wed, 08 Dec 2021 18:55:54: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 18:55:54: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 18:55:55: #2 number of paired peaks: 594 WARNING @ Wed, 08 Dec 2021 18:55:55: Fewer paired peaks (594) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 594 pairs to build model! INFO @ Wed, 08 Dec 2021 18:55:55: start model_add_line... INFO @ Wed, 08 Dec 2021 18:55:55: start X-correlation... INFO @ Wed, 08 Dec 2021 18:55:55: end of X-cor INFO @ Wed, 08 Dec 2021 18:55:55: #2 finished! INFO @ Wed, 08 Dec 2021 18:55:55: #2 predicted fragment length is 119 bps INFO @ Wed, 08 Dec 2021 18:55:55: #2 alternative fragment length(s) may be 2,101,119 bps INFO @ Wed, 08 Dec 2021 18:55:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.10_model.r INFO @ Wed, 08 Dec 2021 18:55:55: #3 Call peaks... INFO @ Wed, 08 Dec 2021 18:55:55: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 18:55:56: 53000000 INFO @ Wed, 08 Dec 2021 18:55:57: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 18:56:03: 54000000 INFO @ Wed, 08 Dec 2021 18:56:09: 55000000 INFO @ Wed, 08 Dec 2021 18:56:13: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.05_peaks.xls INFO @ Wed, 08 Dec 2021 18:56:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 18:56:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.05_summits.bed INFO @ Wed, 08 Dec 2021 18:56:13: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (2217 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 18:56:15: 56000000 INFO @ Wed, 08 Dec 2021 18:56:17: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 18:56:17: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 18:56:17: #1 total tags in treatment: 25234414 INFO @ Wed, 08 Dec 2021 18:56:17: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 18:56:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 18:56:17: #1 tags after filtering in treatment: 19987800 INFO @ Wed, 08 Dec 2021 18:56:17: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 08 Dec 2021 18:56:17: #1 finished! INFO @ Wed, 08 Dec 2021 18:56:17: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 18:56:17: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 18:56:18: #2 number of paired peaks: 594 WARNING @ Wed, 08 Dec 2021 18:56:18: Fewer paired peaks (594) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 594 pairs to build model! INFO @ Wed, 08 Dec 2021 18:56:18: start model_add_line... INFO @ Wed, 08 Dec 2021 18:56:18: start X-correlation... INFO @ Wed, 08 Dec 2021 18:56:18: end of X-cor INFO @ Wed, 08 Dec 2021 18:56:18: #2 finished! INFO @ Wed, 08 Dec 2021 18:56:18: #2 predicted fragment length is 119 bps INFO @ Wed, 08 Dec 2021 18:56:18: #2 alternative fragment length(s) may be 2,101,119 bps INFO @ Wed, 08 Dec 2021 18:56:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.20_model.r INFO @ Wed, 08 Dec 2021 18:56:18: #3 Call peaks... INFO @ Wed, 08 Dec 2021 18:56:18: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 18:56:30: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 18:56:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.10_peaks.xls INFO @ Wed, 08 Dec 2021 18:56:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 18:56:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.10_summits.bed INFO @ Wed, 08 Dec 2021 18:56:46: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (1122 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 18:56:52: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 18:57:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.20_peaks.xls INFO @ Wed, 08 Dec 2021 18:57:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 18:57:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX10342576/SRX10342576.20_summits.bed INFO @ Wed, 08 Dec 2021 18:57:08: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (581 records, 4 fields): 2 millis CompletedMACS2peakCalling