Job ID = 14158438 SRX = SRX9025733 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 14034813 spots for SRR12551286/SRR12551286.sra Written 14034813 spots for SRR12551286/SRR12551286.sra Read 155394203 spots for SRR12551287/SRR12551287.sra Written 155394203 spots for SRR12551287/SRR12551287.sra Read 147312398 spots for SRR12551288/SRR12551288.sra Written 147312398 spots for SRR12551288/SRR12551288.sra fastq に変換しました。 bowtie でマッピング中... Your job 14161177 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 04:33:30 316741414 reads; of these: 316741414 (100.00%) were paired; of these: 97446958 (30.77%) aligned concordantly 0 times 194658788 (61.46%) aligned concordantly exactly 1 time 24635668 (7.78%) aligned concordantly >1 times ---- 97446958 pairs aligned concordantly 0 times; of these: 23525235 (24.14%) aligned discordantly 1 time ---- 73921723 pairs aligned 0 times concordantly or discordantly; of these: 147843446 mates make up the pairs; of these: 106870641 (72.29%) aligned 0 times 29685437 (20.08%) aligned exactly 1 time 11287368 (7.63%) aligned >1 times 83.13% overall alignment rate Time searching: 04:33:30 Overall time: 04:33:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 216 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 221904059 / 240611751 = 0.9222 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 07:16:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 07:16:15: #1 read tag files... INFO @ Thu, 09 Dec 2021 07:16:15: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 07:16:21: 1000000 INFO @ Thu, 09 Dec 2021 07:16:26: 2000000 INFO @ Thu, 09 Dec 2021 07:16:32: 3000000 INFO @ Thu, 09 Dec 2021 07:16:37: 4000000 INFO @ Thu, 09 Dec 2021 07:16:42: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 07:16:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 07:16:45: #1 read tag files... INFO @ Thu, 09 Dec 2021 07:16:45: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 07:16:48: 6000000 INFO @ Thu, 09 Dec 2021 07:16:53: 1000000 INFO @ Thu, 09 Dec 2021 07:16:55: 7000000 INFO @ Thu, 09 Dec 2021 07:17:01: 2000000 INFO @ Thu, 09 Dec 2021 07:17:02: 8000000 INFO @ Thu, 09 Dec 2021 07:17:08: 9000000 INFO @ Thu, 09 Dec 2021 07:17:09: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 07:17:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 07:17:15: #1 read tag files... INFO @ Thu, 09 Dec 2021 07:17:15: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 07:17:15: 10000000 INFO @ Thu, 09 Dec 2021 07:17:17: 4000000 INFO @ Thu, 09 Dec 2021 07:17:22: 11000000 INFO @ Thu, 09 Dec 2021 07:17:23: 1000000 INFO @ Thu, 09 Dec 2021 07:17:25: 5000000 INFO @ Thu, 09 Dec 2021 07:17:29: 12000000 INFO @ Thu, 09 Dec 2021 07:17:31: 2000000 INFO @ Thu, 09 Dec 2021 07:17:33: 6000000 INFO @ Thu, 09 Dec 2021 07:17:36: 13000000 INFO @ Thu, 09 Dec 2021 07:17:39: 3000000 INFO @ Thu, 09 Dec 2021 07:17:41: 7000000 INFO @ Thu, 09 Dec 2021 07:17:42: 14000000 INFO @ Thu, 09 Dec 2021 07:17:47: 4000000 INFO @ Thu, 09 Dec 2021 07:17:49: 8000000 INFO @ Thu, 09 Dec 2021 07:17:49: 15000000 INFO @ Thu, 09 Dec 2021 07:17:55: 5000000 INFO @ Thu, 09 Dec 2021 07:17:56: 16000000 INFO @ Thu, 09 Dec 2021 07:17:57: 9000000 INFO @ Thu, 09 Dec 2021 07:18:03: 17000000 INFO @ Thu, 09 Dec 2021 07:18:03: 6000000 INFO @ Thu, 09 Dec 2021 07:18:05: 10000000 INFO @ Thu, 09 Dec 2021 07:18:10: 18000000 INFO @ Thu, 09 Dec 2021 07:18:11: 7000000 INFO @ Thu, 09 Dec 2021 07:18:13: 11000000 INFO @ Thu, 09 Dec 2021 07:18:16: 19000000 INFO @ Thu, 09 Dec 2021 07:18:19: 8000000 INFO @ Thu, 09 Dec 2021 07:18:21: 12000000 INFO @ Thu, 09 Dec 2021 07:18:23: 20000000 INFO @ Thu, 09 Dec 2021 07:18:27: 9000000 INFO @ Thu, 09 Dec 2021 07:18:29: 13000000 INFO @ Thu, 09 Dec 2021 07:18:30: 21000000 INFO @ Thu, 09 Dec 2021 07:18:35: 10000000 INFO @ Thu, 09 Dec 2021 07:18:37: 22000000 INFO @ Thu, 09 Dec 2021 07:18:37: 14000000 INFO @ Thu, 09 Dec 2021 07:18:43: 11000000 INFO @ Thu, 09 Dec 2021 07:18:44: 23000000 INFO @ Thu, 09 Dec 2021 07:18:45: 15000000 INFO @ Thu, 09 Dec 2021 07:18:51: 24000000 INFO @ Thu, 09 Dec 2021 07:18:51: 12000000 INFO @ Thu, 09 Dec 2021 07:18:53: 16000000 INFO @ Thu, 09 Dec 2021 07:18:57: 25000000 INFO @ Thu, 09 Dec 2021 07:18:59: 13000000 INFO @ Thu, 09 Dec 2021 07:19:01: 17000000 INFO @ Thu, 09 Dec 2021 07:19:04: 26000000 INFO @ Thu, 09 Dec 2021 07:19:07: 14000000 INFO @ Thu, 09 Dec 2021 07:19:09: 18000000 INFO @ Thu, 09 Dec 2021 07:19:11: 27000000 INFO @ Thu, 09 Dec 2021 07:19:15: 15000000 INFO @ Thu, 09 Dec 2021 07:19:17: 19000000 INFO @ Thu, 09 Dec 2021 07:19:18: 28000000 INFO @ Thu, 09 Dec 2021 07:19:23: 16000000 INFO @ Thu, 09 Dec 2021 07:19:25: 29000000 INFO @ Thu, 09 Dec 2021 07:19:25: 20000000 INFO @ Thu, 09 Dec 2021 07:19:31: 17000000 INFO @ Thu, 09 Dec 2021 07:19:31: 30000000 INFO @ Thu, 09 Dec 2021 07:19:33: 21000000 INFO @ Thu, 09 Dec 2021 07:19:38: 31000000 INFO @ Thu, 09 Dec 2021 07:19:39: 18000000 INFO @ Thu, 09 Dec 2021 07:19:41: 22000000 INFO @ Thu, 09 Dec 2021 07:19:45: 32000000 INFO @ Thu, 09 Dec 2021 07:19:47: 19000000 INFO @ Thu, 09 Dec 2021 07:19:50: 23000000 INFO @ Thu, 09 Dec 2021 07:19:52: 33000000 INFO @ Thu, 09 Dec 2021 07:19:55: 20000000 INFO @ Thu, 09 Dec 2021 07:19:58: 24000000 INFO @ Thu, 09 Dec 2021 07:19:59: 34000000 INFO @ Thu, 09 Dec 2021 07:20:03: 21000000 INFO @ Thu, 09 Dec 2021 07:20:05: 35000000 INFO @ Thu, 09 Dec 2021 07:20:06: 25000000 INFO @ Thu, 09 Dec 2021 07:20:11: 22000000 INFO @ Thu, 09 Dec 2021 07:20:12: 36000000 INFO @ Thu, 09 Dec 2021 07:20:14: 26000000 INFO @ Thu, 09 Dec 2021 07:20:19: 37000000 INFO @ Thu, 09 Dec 2021 07:20:19: 23000000 INFO @ Thu, 09 Dec 2021 07:20:22: 27000000 INFO @ Thu, 09 Dec 2021 07:20:26: 38000000 INFO @ Thu, 09 Dec 2021 07:20:27: 24000000 INFO @ Thu, 09 Dec 2021 07:20:30: 28000000 INFO @ Thu, 09 Dec 2021 07:20:32: 39000000 INFO @ Thu, 09 Dec 2021 07:20:35: 25000000 INFO @ Thu, 09 Dec 2021 07:20:38: 29000000 INFO @ Thu, 09 Dec 2021 07:20:39: 40000000 INFO @ Thu, 09 Dec 2021 07:20:43: 26000000 INFO @ Thu, 09 Dec 2021 07:20:45: 41000000 INFO @ Thu, 09 Dec 2021 07:20:46: 30000000 INFO @ Thu, 09 Dec 2021 07:20:51: 27000000 INFO @ Thu, 09 Dec 2021 07:20:52: 42000000 INFO @ Thu, 09 Dec 2021 07:20:55: 31000000 INFO @ Thu, 09 Dec 2021 07:20:59: 43000000 INFO @ Thu, 09 Dec 2021 07:20:59: 28000000 INFO @ Thu, 09 Dec 2021 07:21:03: 32000000 INFO @ Thu, 09 Dec 2021 07:21:06: 44000000 INFO @ Thu, 09 Dec 2021 07:21:07: 29000000 INFO @ Thu, 09 Dec 2021 07:21:11: 33000000 INFO @ Thu, 09 Dec 2021 07:21:12: 45000000 INFO @ Thu, 09 Dec 2021 07:21:15: 30000000 INFO @ Thu, 09 Dec 2021 07:21:19: 34000000 INFO @ Thu, 09 Dec 2021 07:21:19: 46000000 INFO @ Thu, 09 Dec 2021 07:21:23: 31000000 INFO @ Thu, 09 Dec 2021 07:21:26: 47000000 INFO @ Thu, 09 Dec 2021 07:21:27: 35000000 INFO @ Thu, 09 Dec 2021 07:21:32: 32000000 INFO @ Thu, 09 Dec 2021 07:21:32: 48000000 INFO @ Thu, 09 Dec 2021 07:21:35: 36000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 09 Dec 2021 07:21:39: 49000000 INFO @ Thu, 09 Dec 2021 07:21:40: 33000000 INFO @ Thu, 09 Dec 2021 07:21:42: 37000000 INFO @ Thu, 09 Dec 2021 07:21:46: 50000000 INFO @ Thu, 09 Dec 2021 07:21:48: 34000000 INFO @ Thu, 09 Dec 2021 07:21:50: 38000000 INFO @ Thu, 09 Dec 2021 07:21:52: 51000000 INFO @ Thu, 09 Dec 2021 07:21:56: 35000000 INFO @ Thu, 09 Dec 2021 07:21:58: 39000000 INFO @ Thu, 09 Dec 2021 07:21:59: 52000000 INFO @ Thu, 09 Dec 2021 07:22:03: 36000000 INFO @ Thu, 09 Dec 2021 07:22:06: 40000000 INFO @ Thu, 09 Dec 2021 07:22:06: 53000000 INFO @ Thu, 09 Dec 2021 07:22:11: 37000000 INFO @ Thu, 09 Dec 2021 07:22:12: 54000000 INFO @ Thu, 09 Dec 2021 07:22:13: 41000000 BigWig に変換しました。 INFO @ Thu, 09 Dec 2021 07:22:19: 38000000 INFO @ Thu, 09 Dec 2021 07:22:19: 55000000 INFO @ Thu, 09 Dec 2021 07:22:21: 42000000 INFO @ Thu, 09 Dec 2021 07:22:26: 56000000 INFO @ Thu, 09 Dec 2021 07:22:27: 39000000 INFO @ Thu, 09 Dec 2021 07:22:29: 43000000 INFO @ Thu, 09 Dec 2021 07:22:32: 57000000 INFO @ Thu, 09 Dec 2021 07:22:34: 40000000 INFO @ Thu, 09 Dec 2021 07:22:37: 44000000 INFO @ Thu, 09 Dec 2021 07:22:39: 58000000 INFO @ Thu, 09 Dec 2021 07:22:42: 41000000 INFO @ Thu, 09 Dec 2021 07:22:45: 45000000 INFO @ Thu, 09 Dec 2021 07:22:46: 59000000 INFO @ Thu, 09 Dec 2021 07:22:50: 42000000 INFO @ Thu, 09 Dec 2021 07:22:52: 60000000 INFO @ Thu, 09 Dec 2021 07:22:52: 46000000 INFO @ Thu, 09 Dec 2021 07:22:58: 43000000 INFO @ Thu, 09 Dec 2021 07:22:59: 61000000 INFO @ Thu, 09 Dec 2021 07:23:00: 47000000 INFO @ Thu, 09 Dec 2021 07:23:06: 44000000 INFO @ Thu, 09 Dec 2021 07:23:06: 62000000 INFO @ Thu, 09 Dec 2021 07:23:08: 48000000 INFO @ Thu, 09 Dec 2021 07:23:12: 63000000 INFO @ Thu, 09 Dec 2021 07:23:13: 45000000 INFO @ Thu, 09 Dec 2021 07:23:16: 49000000 INFO @ Thu, 09 Dec 2021 07:23:19: 64000000 INFO @ Thu, 09 Dec 2021 07:23:21: 46000000 INFO @ Thu, 09 Dec 2021 07:23:23: 50000000 INFO @ Thu, 09 Dec 2021 07:23:26: 65000000 INFO @ Thu, 09 Dec 2021 07:23:29: 47000000 INFO @ Thu, 09 Dec 2021 07:23:31: 51000000 INFO @ Thu, 09 Dec 2021 07:23:33: 66000000 INFO @ Thu, 09 Dec 2021 07:23:36: 48000000 INFO @ Thu, 09 Dec 2021 07:23:39: 52000000 INFO @ Thu, 09 Dec 2021 07:23:39: 67000000 INFO @ Thu, 09 Dec 2021 07:23:44: 49000000 INFO @ Thu, 09 Dec 2021 07:23:46: 68000000 INFO @ Thu, 09 Dec 2021 07:23:47: 53000000 INFO @ Thu, 09 Dec 2021 07:23:52: 50000000 INFO @ Thu, 09 Dec 2021 07:23:53: 69000000 INFO @ Thu, 09 Dec 2021 07:23:55: 54000000 INFO @ Thu, 09 Dec 2021 07:23:59: 70000000 INFO @ Thu, 09 Dec 2021 07:24:00: 51000000 INFO @ Thu, 09 Dec 2021 07:24:02: 55000000 INFO @ Thu, 09 Dec 2021 07:24:06: 71000000 INFO @ Thu, 09 Dec 2021 07:24:07: 52000000 INFO @ Thu, 09 Dec 2021 07:24:10: 56000000 INFO @ Thu, 09 Dec 2021 07:24:13: 72000000 INFO @ Thu, 09 Dec 2021 07:24:15: 53000000 INFO @ Thu, 09 Dec 2021 07:24:18: 57000000 INFO @ Thu, 09 Dec 2021 07:24:19: 73000000 INFO @ Thu, 09 Dec 2021 07:24:23: 54000000 INFO @ Thu, 09 Dec 2021 07:24:26: 58000000 INFO @ Thu, 09 Dec 2021 07:24:26: 74000000 INFO @ Thu, 09 Dec 2021 07:24:31: 55000000 INFO @ Thu, 09 Dec 2021 07:24:33: 75000000 INFO @ Thu, 09 Dec 2021 07:24:33: 59000000 INFO @ Thu, 09 Dec 2021 07:24:39: 56000000 INFO @ Thu, 09 Dec 2021 07:24:39: 76000000 INFO @ Thu, 09 Dec 2021 07:24:41: 60000000 INFO @ Thu, 09 Dec 2021 07:24:46: 77000000 INFO @ Thu, 09 Dec 2021 07:24:46: 57000000 INFO @ Thu, 09 Dec 2021 07:24:49: 61000000 INFO @ Thu, 09 Dec 2021 07:24:53: 78000000 INFO @ Thu, 09 Dec 2021 07:24:54: 58000000 INFO @ Thu, 09 Dec 2021 07:24:57: 62000000 INFO @ Thu, 09 Dec 2021 07:24:59: 79000000 INFO @ Thu, 09 Dec 2021 07:25:02: 59000000 INFO @ Thu, 09 Dec 2021 07:25:04: 63000000 INFO @ Thu, 09 Dec 2021 07:25:06: 80000000 INFO @ Thu, 09 Dec 2021 07:25:09: 60000000 INFO @ Thu, 09 Dec 2021 07:25:12: 64000000 INFO @ Thu, 09 Dec 2021 07:25:12: 81000000 INFO @ Thu, 09 Dec 2021 07:25:17: 61000000 INFO @ Thu, 09 Dec 2021 07:25:19: 82000000 INFO @ Thu, 09 Dec 2021 07:25:20: 65000000 INFO @ Thu, 09 Dec 2021 07:25:24: #1 tag size is determined as 75 bps INFO @ Thu, 09 Dec 2021 07:25:24: #1 tag size = 75 INFO @ Thu, 09 Dec 2021 07:25:24: #1 total tags in treatment: 18349208 INFO @ Thu, 09 Dec 2021 07:25:24: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 07:25:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 07:25:24: #1 tags after filtering in treatment: 9256935 INFO @ Thu, 09 Dec 2021 07:25:24: #1 Redundant rate of treatment: 0.50 INFO @ Thu, 09 Dec 2021 07:25:24: #1 finished! INFO @ Thu, 09 Dec 2021 07:25:24: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 07:25:24: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 07:25:25: 62000000 INFO @ Thu, 09 Dec 2021 07:25:25: #2 number of paired peaks: 1517 INFO @ Thu, 09 Dec 2021 07:25:25: start model_add_line... INFO @ Thu, 09 Dec 2021 07:25:25: start X-correlation... INFO @ Thu, 09 Dec 2021 07:25:25: end of X-cor INFO @ Thu, 09 Dec 2021 07:25:25: #2 finished! INFO @ Thu, 09 Dec 2021 07:25:25: #2 predicted fragment length is 99 bps INFO @ Thu, 09 Dec 2021 07:25:25: #2 alternative fragment length(s) may be 99 bps INFO @ Thu, 09 Dec 2021 07:25:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.05_model.r WARNING @ Thu, 09 Dec 2021 07:25:25: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 07:25:25: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Thu, 09 Dec 2021 07:25:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 07:25:25: #3 Call peaks... INFO @ Thu, 09 Dec 2021 07:25:25: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 07:25:28: 66000000 INFO @ Thu, 09 Dec 2021 07:25:32: 63000000 INFO @ Thu, 09 Dec 2021 07:25:36: 67000000 INFO @ Thu, 09 Dec 2021 07:25:40: 64000000 INFO @ Thu, 09 Dec 2021 07:25:43: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 07:25:43: 68000000 INFO @ Thu, 09 Dec 2021 07:25:48: 65000000 INFO @ Thu, 09 Dec 2021 07:25:51: 69000000 INFO @ Thu, 09 Dec 2021 07:25:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.05_peaks.xls INFO @ Thu, 09 Dec 2021 07:25:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.05_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 07:25:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.05_summits.bed INFO @ Thu, 09 Dec 2021 07:25:53: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (9918 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 07:25:55: 66000000 INFO @ Thu, 09 Dec 2021 07:25:59: 70000000 INFO @ Thu, 09 Dec 2021 07:26:03: 67000000 INFO @ Thu, 09 Dec 2021 07:26:06: 71000000 INFO @ Thu, 09 Dec 2021 07:26:11: 68000000 INFO @ Thu, 09 Dec 2021 07:26:14: 72000000 INFO @ Thu, 09 Dec 2021 07:26:18: 69000000 INFO @ Thu, 09 Dec 2021 07:26:21: 73000000 INFO @ Thu, 09 Dec 2021 07:26:26: 70000000 INFO @ Thu, 09 Dec 2021 07:26:29: 74000000 INFO @ Thu, 09 Dec 2021 07:26:34: 71000000 INFO @ Thu, 09 Dec 2021 07:26:37: 75000000 INFO @ Thu, 09 Dec 2021 07:26:41: 72000000 INFO @ Thu, 09 Dec 2021 07:26:44: 76000000 INFO @ Thu, 09 Dec 2021 07:26:49: 73000000 INFO @ Thu, 09 Dec 2021 07:26:52: 77000000 INFO @ Thu, 09 Dec 2021 07:26:56: 74000000 INFO @ Thu, 09 Dec 2021 07:27:00: 78000000 INFO @ Thu, 09 Dec 2021 07:27:04: 75000000 INFO @ Thu, 09 Dec 2021 07:27:07: 79000000 INFO @ Thu, 09 Dec 2021 07:27:12: 76000000 INFO @ Thu, 09 Dec 2021 07:27:15: 80000000 INFO @ Thu, 09 Dec 2021 07:27:19: 77000000 INFO @ Thu, 09 Dec 2021 07:27:22: 81000000 INFO @ Thu, 09 Dec 2021 07:27:27: 78000000 INFO @ Thu, 09 Dec 2021 07:27:30: 82000000 INFO @ Thu, 09 Dec 2021 07:27:34: 79000000 INFO @ Thu, 09 Dec 2021 07:27:36: #1 tag size is determined as 75 bps INFO @ Thu, 09 Dec 2021 07:27:36: #1 tag size = 75 INFO @ Thu, 09 Dec 2021 07:27:36: #1 total tags in treatment: 18349208 INFO @ Thu, 09 Dec 2021 07:27:36: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 07:27:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 07:27:36: #1 tags after filtering in treatment: 9256935 INFO @ Thu, 09 Dec 2021 07:27:36: #1 Redundant rate of treatment: 0.50 INFO @ Thu, 09 Dec 2021 07:27:36: #1 finished! INFO @ Thu, 09 Dec 2021 07:27:36: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 07:27:36: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 07:27:37: #2 number of paired peaks: 1517 INFO @ Thu, 09 Dec 2021 07:27:37: start model_add_line... INFO @ Thu, 09 Dec 2021 07:27:37: start X-correlation... INFO @ Thu, 09 Dec 2021 07:27:37: end of X-cor INFO @ Thu, 09 Dec 2021 07:27:37: #2 finished! INFO @ Thu, 09 Dec 2021 07:27:37: #2 predicted fragment length is 99 bps INFO @ Thu, 09 Dec 2021 07:27:37: #2 alternative fragment length(s) may be 99 bps INFO @ Thu, 09 Dec 2021 07:27:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.10_model.r WARNING @ Thu, 09 Dec 2021 07:27:37: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 07:27:37: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Thu, 09 Dec 2021 07:27:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 07:27:37: #3 Call peaks... INFO @ Thu, 09 Dec 2021 07:27:37: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 07:27:41: 80000000 INFO @ Thu, 09 Dec 2021 07:27:48: 81000000 INFO @ Thu, 09 Dec 2021 07:27:55: 82000000 INFO @ Thu, 09 Dec 2021 07:27:56: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 07:28:00: #1 tag size is determined as 75 bps INFO @ Thu, 09 Dec 2021 07:28:00: #1 tag size = 75 INFO @ Thu, 09 Dec 2021 07:28:00: #1 total tags in treatment: 18349208 INFO @ Thu, 09 Dec 2021 07:28:00: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 07:28:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 07:28:01: #1 tags after filtering in treatment: 9256935 INFO @ Thu, 09 Dec 2021 07:28:01: #1 Redundant rate of treatment: 0.50 INFO @ Thu, 09 Dec 2021 07:28:01: #1 finished! INFO @ Thu, 09 Dec 2021 07:28:01: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 07:28:01: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 07:28:01: #2 number of paired peaks: 1517 INFO @ Thu, 09 Dec 2021 07:28:01: start model_add_line... INFO @ Thu, 09 Dec 2021 07:28:01: start X-correlation... INFO @ Thu, 09 Dec 2021 07:28:01: end of X-cor INFO @ Thu, 09 Dec 2021 07:28:01: #2 finished! INFO @ Thu, 09 Dec 2021 07:28:01: #2 predicted fragment length is 99 bps INFO @ Thu, 09 Dec 2021 07:28:01: #2 alternative fragment length(s) may be 99 bps INFO @ Thu, 09 Dec 2021 07:28:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.20_model.r WARNING @ Thu, 09 Dec 2021 07:28:01: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 07:28:01: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Thu, 09 Dec 2021 07:28:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 07:28:01: #3 Call peaks... INFO @ Thu, 09 Dec 2021 07:28:01: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 07:28:05: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.10_peaks.xls INFO @ Thu, 09 Dec 2021 07:28:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.10_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 07:28:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.10_summits.bed INFO @ Thu, 09 Dec 2021 07:28:05: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (5101 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 07:28:21: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 07:28:30: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.20_peaks.xls INFO @ Thu, 09 Dec 2021 07:28:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.20_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 07:28:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX9025733/SRX9025733.20_summits.bed INFO @ Thu, 09 Dec 2021 07:28:30: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1742 records, 4 fields): 16 millis CompletedMACS2peakCalling