Job ID = 14157919 SRX = SRX8948261 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 66904015 spots for SRR12453803/SRR12453803.sra Written 66904015 spots for SRR12453803/SRR12453803.sra fastq に変換しました。 bowtie でマッピング中... Your job 14159345 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:31:47 66904015 reads; of these: 66904015 (100.00%) were paired; of these: 21890641 (32.72%) aligned concordantly 0 times 38777621 (57.96%) aligned concordantly exactly 1 time 6235753 (9.32%) aligned concordantly >1 times ---- 21890641 pairs aligned concordantly 0 times; of these: 8618295 (39.37%) aligned discordantly 1 time ---- 13272346 pairs aligned 0 times concordantly or discordantly; of these: 26544692 mates make up the pairs; of these: 23955602 (90.25%) aligned 0 times 1021947 (3.85%) aligned exactly 1 time 1567143 (5.90%) aligned >1 times 82.10% overall alignment rate Time searching: 02:31:47 Overall time: 02:31:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 80 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 13726437 / 53262791 = 0.2577 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 20:12:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 20:12:31: #1 read tag files... INFO @ Wed, 08 Dec 2021 20:12:31: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 20:12:41: 1000000 INFO @ Wed, 08 Dec 2021 20:12:51: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 20:13:01: 3000000 INFO @ Wed, 08 Dec 2021 20:13:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 20:13:01: #1 read tag files... INFO @ Wed, 08 Dec 2021 20:13:01: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 20:13:11: 4000000 INFO @ Wed, 08 Dec 2021 20:13:12: 1000000 INFO @ Wed, 08 Dec 2021 20:13:21: 5000000 INFO @ Wed, 08 Dec 2021 20:13:23: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 20:13:31: 6000000 INFO @ Wed, 08 Dec 2021 20:13:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 20:13:31: #1 read tag files... INFO @ Wed, 08 Dec 2021 20:13:31: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 20:13:35: 3000000 INFO @ Wed, 08 Dec 2021 20:13:42: 7000000 INFO @ Wed, 08 Dec 2021 20:13:42: 1000000 INFO @ Wed, 08 Dec 2021 20:13:46: 4000000 INFO @ Wed, 08 Dec 2021 20:13:53: 8000000 INFO @ Wed, 08 Dec 2021 20:13:53: 2000000 INFO @ Wed, 08 Dec 2021 20:13:58: 5000000 INFO @ Wed, 08 Dec 2021 20:14:04: 3000000 INFO @ Wed, 08 Dec 2021 20:14:04: 9000000 INFO @ Wed, 08 Dec 2021 20:14:09: 6000000 INFO @ Wed, 08 Dec 2021 20:14:15: 4000000 INFO @ Wed, 08 Dec 2021 20:14:15: 10000000 INFO @ Wed, 08 Dec 2021 20:14:20: 7000000 INFO @ Wed, 08 Dec 2021 20:14:26: 5000000 INFO @ Wed, 08 Dec 2021 20:14:26: 11000000 INFO @ Wed, 08 Dec 2021 20:14:31: 8000000 INFO @ Wed, 08 Dec 2021 20:14:36: 6000000 INFO @ Wed, 08 Dec 2021 20:14:37: 12000000 INFO @ Wed, 08 Dec 2021 20:14:42: 9000000 INFO @ Wed, 08 Dec 2021 20:14:46: 7000000 INFO @ Wed, 08 Dec 2021 20:14:47: 13000000 INFO @ Wed, 08 Dec 2021 20:14:53: 10000000 INFO @ Wed, 08 Dec 2021 20:14:57: 8000000 INFO @ Wed, 08 Dec 2021 20:14:58: 14000000 INFO @ Wed, 08 Dec 2021 20:15:04: 11000000 INFO @ Wed, 08 Dec 2021 20:15:07: 9000000 INFO @ Wed, 08 Dec 2021 20:15:08: 15000000 INFO @ Wed, 08 Dec 2021 20:15:15: 12000000 INFO @ Wed, 08 Dec 2021 20:15:18: 16000000 INFO @ Wed, 08 Dec 2021 20:15:18: 10000000 INFO @ Wed, 08 Dec 2021 20:15:26: 13000000 INFO @ Wed, 08 Dec 2021 20:15:28: 17000000 INFO @ Wed, 08 Dec 2021 20:15:29: 11000000 INFO @ Wed, 08 Dec 2021 20:15:37: 14000000 INFO @ Wed, 08 Dec 2021 20:15:38: 18000000 INFO @ Wed, 08 Dec 2021 20:15:40: 12000000 INFO @ Wed, 08 Dec 2021 20:15:47: 15000000 INFO @ Wed, 08 Dec 2021 20:15:48: 19000000 INFO @ Wed, 08 Dec 2021 20:15:50: 13000000 INFO @ Wed, 08 Dec 2021 20:15:59: 16000000 INFO @ Wed, 08 Dec 2021 20:15:59: 20000000 INFO @ Wed, 08 Dec 2021 20:16:02: 14000000 INFO @ Wed, 08 Dec 2021 20:16:10: 21000000 INFO @ Wed, 08 Dec 2021 20:16:10: 17000000 INFO @ Wed, 08 Dec 2021 20:16:13: 15000000 INFO @ Wed, 08 Dec 2021 20:16:20: 22000000 INFO @ Wed, 08 Dec 2021 20:16:21: 18000000 INFO @ Wed, 08 Dec 2021 20:16:24: 16000000 INFO @ Wed, 08 Dec 2021 20:16:32: 23000000 INFO @ Wed, 08 Dec 2021 20:16:33: 19000000 INFO @ Wed, 08 Dec 2021 20:16:36: 17000000 INFO @ Wed, 08 Dec 2021 20:16:42: 24000000 INFO @ Wed, 08 Dec 2021 20:16:44: 20000000 INFO @ Wed, 08 Dec 2021 20:16:48: 18000000 INFO @ Wed, 08 Dec 2021 20:16:53: 25000000 INFO @ Wed, 08 Dec 2021 20:16:56: 21000000 INFO @ Wed, 08 Dec 2021 20:17:00: 19000000 INFO @ Wed, 08 Dec 2021 20:17:03: 26000000 INFO @ Wed, 08 Dec 2021 20:17:08: 22000000 INFO @ Wed, 08 Dec 2021 20:17:12: 20000000 INFO @ Wed, 08 Dec 2021 20:17:14: 27000000 INFO @ Wed, 08 Dec 2021 20:17:20: 23000000 INFO @ Wed, 08 Dec 2021 20:17:24: 21000000 INFO @ Wed, 08 Dec 2021 20:17:25: 28000000 INFO @ Wed, 08 Dec 2021 20:17:32: 24000000 INFO @ Wed, 08 Dec 2021 20:17:35: 29000000 INFO @ Wed, 08 Dec 2021 20:17:36: 22000000 INFO @ Wed, 08 Dec 2021 20:17:43: 25000000 INFO @ Wed, 08 Dec 2021 20:17:46: 30000000 INFO @ Wed, 08 Dec 2021 20:17:48: 23000000 INFO @ Wed, 08 Dec 2021 20:17:56: 31000000 INFO @ Wed, 08 Dec 2021 20:17:56: 26000000 INFO @ Wed, 08 Dec 2021 20:17:58: 24000000 INFO @ Wed, 08 Dec 2021 20:18:07: 32000000 INFO @ Wed, 08 Dec 2021 20:18:08: 27000000 INFO @ Wed, 08 Dec 2021 20:18:09: 25000000 INFO @ Wed, 08 Dec 2021 20:18:17: 33000000 INFO @ Wed, 08 Dec 2021 20:18:18: 28000000 INFO @ Wed, 08 Dec 2021 20:18:19: 26000000 INFO @ Wed, 08 Dec 2021 20:18:26: 34000000 INFO @ Wed, 08 Dec 2021 20:18:29: 29000000 INFO @ Wed, 08 Dec 2021 20:18:29: 27000000 INFO @ Wed, 08 Dec 2021 20:18:36: 35000000 INFO @ Wed, 08 Dec 2021 20:18:40: 28000000 INFO @ Wed, 08 Dec 2021 20:18:41: 30000000 INFO @ Wed, 08 Dec 2021 20:18:46: 36000000 INFO @ Wed, 08 Dec 2021 20:18:50: 29000000 INFO @ Wed, 08 Dec 2021 20:18:52: 31000000 INFO @ Wed, 08 Dec 2021 20:18:57: 37000000 INFO @ Wed, 08 Dec 2021 20:19:00: 30000000 INFO @ Wed, 08 Dec 2021 20:19:04: 32000000 INFO @ Wed, 08 Dec 2021 20:19:07: 38000000 INFO @ Wed, 08 Dec 2021 20:19:10: 31000000 INFO @ Wed, 08 Dec 2021 20:19:15: 33000000 INFO @ Wed, 08 Dec 2021 20:19:17: 39000000 INFO @ Wed, 08 Dec 2021 20:19:20: 32000000 INFO @ Wed, 08 Dec 2021 20:19:26: 34000000 INFO @ Wed, 08 Dec 2021 20:19:27: 40000000 INFO @ Wed, 08 Dec 2021 20:19:30: 33000000 INFO @ Wed, 08 Dec 2021 20:19:37: 35000000 INFO @ Wed, 08 Dec 2021 20:19:38: 41000000 INFO @ Wed, 08 Dec 2021 20:19:40: 34000000 INFO @ Wed, 08 Dec 2021 20:19:47: 36000000 INFO @ Wed, 08 Dec 2021 20:19:48: 42000000 INFO @ Wed, 08 Dec 2021 20:19:50: 35000000 INFO @ Wed, 08 Dec 2021 20:19:58: 43000000 INFO @ Wed, 08 Dec 2021 20:19:59: 37000000 INFO @ Wed, 08 Dec 2021 20:19:59: 36000000 INFO @ Wed, 08 Dec 2021 20:20:08: 44000000 INFO @ Wed, 08 Dec 2021 20:20:10: 38000000 INFO @ Wed, 08 Dec 2021 20:20:10: 37000000 INFO @ Wed, 08 Dec 2021 20:20:18: 45000000 INFO @ Wed, 08 Dec 2021 20:20:20: 38000000 INFO @ Wed, 08 Dec 2021 20:20:21: 39000000 INFO @ Wed, 08 Dec 2021 20:20:29: 46000000 INFO @ Wed, 08 Dec 2021 20:20:30: 39000000 INFO @ Wed, 08 Dec 2021 20:20:32: 40000000 INFO @ Wed, 08 Dec 2021 20:20:39: 47000000 INFO @ Wed, 08 Dec 2021 20:20:40: 40000000 INFO @ Wed, 08 Dec 2021 20:20:43: 41000000 INFO @ Wed, 08 Dec 2021 20:20:49: 48000000 INFO @ Wed, 08 Dec 2021 20:20:50: 41000000 INFO @ Wed, 08 Dec 2021 20:20:54: 42000000 INFO @ Wed, 08 Dec 2021 20:20:59: 49000000 INFO @ Wed, 08 Dec 2021 20:21:00: 42000000 INFO @ Wed, 08 Dec 2021 20:21:04: 43000000 INFO @ Wed, 08 Dec 2021 20:21:09: 50000000 INFO @ Wed, 08 Dec 2021 20:21:10: 43000000 INFO @ Wed, 08 Dec 2021 20:21:15: 44000000 INFO @ Wed, 08 Dec 2021 20:21:19: 51000000 INFO @ Wed, 08 Dec 2021 20:21:20: 44000000 INFO @ Wed, 08 Dec 2021 20:21:25: 45000000 INFO @ Wed, 08 Dec 2021 20:21:29: 52000000 INFO @ Wed, 08 Dec 2021 20:21:29: 45000000 INFO @ Wed, 08 Dec 2021 20:21:36: 46000000 INFO @ Wed, 08 Dec 2021 20:21:38: 53000000 INFO @ Wed, 08 Dec 2021 20:21:39: 46000000 INFO @ Wed, 08 Dec 2021 20:21:46: 47000000 INFO @ Wed, 08 Dec 2021 20:21:48: 54000000 INFO @ Wed, 08 Dec 2021 20:21:49: 47000000 INFO @ Wed, 08 Dec 2021 20:21:56: 48000000 INFO @ Wed, 08 Dec 2021 20:21:58: 55000000 INFO @ Wed, 08 Dec 2021 20:21:58: 48000000 INFO @ Wed, 08 Dec 2021 20:22:07: 49000000 INFO @ Wed, 08 Dec 2021 20:22:08: 49000000 INFO @ Wed, 08 Dec 2021 20:22:08: 56000000 INFO @ Wed, 08 Dec 2021 20:22:17: 50000000 INFO @ Wed, 08 Dec 2021 20:22:18: 50000000 INFO @ Wed, 08 Dec 2021 20:22:18: 57000000 INFO @ Wed, 08 Dec 2021 20:22:28: 51000000 INFO @ Wed, 08 Dec 2021 20:22:28: 51000000 INFO @ Wed, 08 Dec 2021 20:22:28: 58000000 INFO @ Wed, 08 Dec 2021 20:22:38: 52000000 INFO @ Wed, 08 Dec 2021 20:22:38: 59000000 INFO @ Wed, 08 Dec 2021 20:22:38: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 20:22:47: 53000000 INFO @ Wed, 08 Dec 2021 20:22:48: 60000000 INFO @ Wed, 08 Dec 2021 20:22:49: 53000000 INFO @ Wed, 08 Dec 2021 20:22:57: 54000000 INFO @ Wed, 08 Dec 2021 20:22:58: 61000000 INFO @ Wed, 08 Dec 2021 20:22:59: 54000000 INFO @ Wed, 08 Dec 2021 20:23:07: 55000000 INFO @ Wed, 08 Dec 2021 20:23:08: 62000000 INFO @ Wed, 08 Dec 2021 20:23:10: 55000000 INFO @ Wed, 08 Dec 2021 20:23:17: 56000000 INFO @ Wed, 08 Dec 2021 20:23:18: 63000000 INFO @ Wed, 08 Dec 2021 20:23:20: 56000000 INFO @ Wed, 08 Dec 2021 20:23:28: 57000000 INFO @ Wed, 08 Dec 2021 20:23:29: 64000000 INFO @ Wed, 08 Dec 2021 20:23:31: 57000000 INFO @ Wed, 08 Dec 2021 20:23:39: 58000000 INFO @ Wed, 08 Dec 2021 20:23:40: 65000000 INFO @ Wed, 08 Dec 2021 20:23:41: 58000000 INFO @ Wed, 08 Dec 2021 20:23:50: 59000000 INFO @ Wed, 08 Dec 2021 20:23:51: 66000000 INFO @ Wed, 08 Dec 2021 20:23:52: 59000000 INFO @ Wed, 08 Dec 2021 20:24:01: 60000000 INFO @ Wed, 08 Dec 2021 20:24:02: 67000000 INFO @ Wed, 08 Dec 2021 20:24:02: 60000000 INFO @ Wed, 08 Dec 2021 20:24:11: 61000000 INFO @ Wed, 08 Dec 2021 20:24:13: 61000000 INFO @ Wed, 08 Dec 2021 20:24:13: 68000000 INFO @ Wed, 08 Dec 2021 20:24:22: 62000000 INFO @ Wed, 08 Dec 2021 20:24:23: 62000000 INFO @ Wed, 08 Dec 2021 20:24:24: 69000000 INFO @ Wed, 08 Dec 2021 20:24:33: 63000000 INFO @ Wed, 08 Dec 2021 20:24:34: 63000000 INFO @ Wed, 08 Dec 2021 20:24:34: 70000000 INFO @ Wed, 08 Dec 2021 20:24:43: 64000000 INFO @ Wed, 08 Dec 2021 20:24:44: 71000000 INFO @ Wed, 08 Dec 2021 20:24:44: 64000000 INFO @ Wed, 08 Dec 2021 20:24:53: 65000000 INFO @ Wed, 08 Dec 2021 20:24:53: 72000000 INFO @ Wed, 08 Dec 2021 20:24:54: 65000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 20:25:03: 66000000 INFO @ Wed, 08 Dec 2021 20:25:03: 73000000 INFO @ Wed, 08 Dec 2021 20:25:05: 66000000 INFO @ Wed, 08 Dec 2021 20:25:13: 67000000 INFO @ Wed, 08 Dec 2021 20:25:13: 74000000 INFO @ Wed, 08 Dec 2021 20:25:16: 67000000 INFO @ Wed, 08 Dec 2021 20:25:23: 68000000 INFO @ Wed, 08 Dec 2021 20:25:23: 75000000 INFO @ Wed, 08 Dec 2021 20:25:26: 68000000 INFO @ Wed, 08 Dec 2021 20:25:34: 69000000 INFO @ Wed, 08 Dec 2021 20:25:34: 76000000 INFO @ Wed, 08 Dec 2021 20:25:37: 69000000 INFO @ Wed, 08 Dec 2021 20:25:44: 70000000 INFO @ Wed, 08 Dec 2021 20:25:44: 77000000 INFO @ Wed, 08 Dec 2021 20:25:47: 70000000 INFO @ Wed, 08 Dec 2021 20:25:55: 71000000 INFO @ Wed, 08 Dec 2021 20:25:55: 78000000 INFO @ Wed, 08 Dec 2021 20:25:58: 71000000 INFO @ Wed, 08 Dec 2021 20:26:06: 72000000 INFO @ Wed, 08 Dec 2021 20:26:07: 79000000 INFO @ Wed, 08 Dec 2021 20:26:08: 72000000 INFO @ Wed, 08 Dec 2021 20:26:17: 73000000 INFO @ Wed, 08 Dec 2021 20:26:18: 80000000 INFO @ Wed, 08 Dec 2021 20:26:19: 73000000 INFO @ Wed, 08 Dec 2021 20:26:28: 74000000 INFO @ Wed, 08 Dec 2021 20:26:29: 81000000 INFO @ Wed, 08 Dec 2021 20:26:29: 74000000 INFO @ Wed, 08 Dec 2021 20:26:39: 75000000 INFO @ Wed, 08 Dec 2021 20:26:39: 82000000 INFO @ Wed, 08 Dec 2021 20:26:40: 75000000 INFO @ Wed, 08 Dec 2021 20:26:44: #1 tag size is determined as 150 bps INFO @ Wed, 08 Dec 2021 20:26:44: #1 tag size = 150 INFO @ Wed, 08 Dec 2021 20:26:44: #1 total tags in treatment: 32961343 INFO @ Wed, 08 Dec 2021 20:26:44: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 20:26:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 20:26:44: #1 tags after filtering in treatment: 28456662 INFO @ Wed, 08 Dec 2021 20:26:44: #1 Redundant rate of treatment: 0.14 INFO @ Wed, 08 Dec 2021 20:26:44: #1 finished! INFO @ Wed, 08 Dec 2021 20:26:44: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 20:26:44: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 20:26:47: #2 number of paired peaks: 131 WARNING @ Wed, 08 Dec 2021 20:26:47: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Wed, 08 Dec 2021 20:26:47: start model_add_line... INFO @ Wed, 08 Dec 2021 20:26:47: start X-correlation... INFO @ Wed, 08 Dec 2021 20:26:47: end of X-cor INFO @ Wed, 08 Dec 2021 20:26:47: #2 finished! INFO @ Wed, 08 Dec 2021 20:26:47: #2 predicted fragment length is 145 bps INFO @ Wed, 08 Dec 2021 20:26:47: #2 alternative fragment length(s) may be 2,107,145 bps INFO @ Wed, 08 Dec 2021 20:26:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.05_model.r WARNING @ Wed, 08 Dec 2021 20:26:47: #2 Since the d (145) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 20:26:47: #2 You may need to consider one of the other alternative d(s): 2,107,145 WARNING @ Wed, 08 Dec 2021 20:26:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 20:26:47: #3 Call peaks... INFO @ Wed, 08 Dec 2021 20:26:47: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 20:26:49: 76000000 INFO @ Wed, 08 Dec 2021 20:26:51: 76000000 INFO @ Wed, 08 Dec 2021 20:26:58: 77000000 INFO @ Wed, 08 Dec 2021 20:27:01: 77000000 INFO @ Wed, 08 Dec 2021 20:27:07: 78000000 INFO @ Wed, 08 Dec 2021 20:27:11: 78000000 INFO @ Wed, 08 Dec 2021 20:27:16: 79000000 INFO @ Wed, 08 Dec 2021 20:27:21: 79000000 INFO @ Wed, 08 Dec 2021 20:27:25: 80000000 INFO @ Wed, 08 Dec 2021 20:27:31: 80000000 INFO @ Wed, 08 Dec 2021 20:27:35: 81000000 INFO @ Wed, 08 Dec 2021 20:27:42: 81000000 INFO @ Wed, 08 Dec 2021 20:27:44: 82000000 INFO @ Wed, 08 Dec 2021 20:27:48: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 20:27:48: #1 tag size is determined as 150 bps INFO @ Wed, 08 Dec 2021 20:27:48: #1 tag size = 150 INFO @ Wed, 08 Dec 2021 20:27:48: #1 total tags in treatment: 32961343 INFO @ Wed, 08 Dec 2021 20:27:48: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 20:27:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 20:27:49: #1 tags after filtering in treatment: 28456662 INFO @ Wed, 08 Dec 2021 20:27:49: #1 Redundant rate of treatment: 0.14 INFO @ Wed, 08 Dec 2021 20:27:49: #1 finished! INFO @ Wed, 08 Dec 2021 20:27:49: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 20:27:49: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 20:27:51: #2 number of paired peaks: 131 WARNING @ Wed, 08 Dec 2021 20:27:51: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Wed, 08 Dec 2021 20:27:51: start model_add_line... INFO @ Wed, 08 Dec 2021 20:27:51: start X-correlation... INFO @ Wed, 08 Dec 2021 20:27:51: end of X-cor INFO @ Wed, 08 Dec 2021 20:27:51: #2 finished! INFO @ Wed, 08 Dec 2021 20:27:51: #2 predicted fragment length is 145 bps INFO @ Wed, 08 Dec 2021 20:27:51: #2 alternative fragment length(s) may be 2,107,145 bps INFO @ Wed, 08 Dec 2021 20:27:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.20_model.r WARNING @ Wed, 08 Dec 2021 20:27:51: #2 Since the d (145) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 20:27:51: #2 You may need to consider one of the other alternative d(s): 2,107,145 WARNING @ Wed, 08 Dec 2021 20:27:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 20:27:51: #3 Call peaks... INFO @ Wed, 08 Dec 2021 20:27:51: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 20:27:52: 82000000 INFO @ Wed, 08 Dec 2021 20:27:56: #1 tag size is determined as 150 bps INFO @ Wed, 08 Dec 2021 20:27:56: #1 tag size = 150 INFO @ Wed, 08 Dec 2021 20:27:56: #1 total tags in treatment: 32961343 INFO @ Wed, 08 Dec 2021 20:27:56: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 20:27:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 20:27:56: #1 tags after filtering in treatment: 28456662 INFO @ Wed, 08 Dec 2021 20:27:56: #1 Redundant rate of treatment: 0.14 INFO @ Wed, 08 Dec 2021 20:27:56: #1 finished! INFO @ Wed, 08 Dec 2021 20:27:56: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 20:27:56: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 20:27:59: #2 number of paired peaks: 131 WARNING @ Wed, 08 Dec 2021 20:27:59: Fewer paired peaks (131) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 131 pairs to build model! INFO @ Wed, 08 Dec 2021 20:27:59: start model_add_line... INFO @ Wed, 08 Dec 2021 20:27:59: start X-correlation... INFO @ Wed, 08 Dec 2021 20:27:59: end of X-cor INFO @ Wed, 08 Dec 2021 20:27:59: #2 finished! INFO @ Wed, 08 Dec 2021 20:27:59: #2 predicted fragment length is 145 bps INFO @ Wed, 08 Dec 2021 20:27:59: #2 alternative fragment length(s) may be 2,107,145 bps INFO @ Wed, 08 Dec 2021 20:27:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.10_model.r WARNING @ Wed, 08 Dec 2021 20:28:00: #2 Since the d (145) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 20:28:00: #2 You may need to consider one of the other alternative d(s): 2,107,145 WARNING @ Wed, 08 Dec 2021 20:28:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 20:28:00: #3 Call peaks... INFO @ Wed, 08 Dec 2021 20:28:00: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 20:28:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.05_peaks.xls INFO @ Wed, 08 Dec 2021 20:28:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 20:28:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.05_summits.bed INFO @ Wed, 08 Dec 2021 20:28:15: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (587 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 20:28:52: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 20:29:01: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 20:29:19: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.20_peaks.xls INFO @ Wed, 08 Dec 2021 20:29:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 20:29:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.20_summits.bed INFO @ Wed, 08 Dec 2021 20:29:19: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (283 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 20:29:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.10_peaks.xls INFO @ Wed, 08 Dec 2021 20:29:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 20:29:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948261/SRX8948261.10_summits.bed INFO @ Wed, 08 Dec 2021 20:29:28: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (432 records, 4 fields): 2 millis CompletedMACS2peakCalling