Job ID = 14157843 SRX = SRX7879252 Genome = ce10 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 60530886 spots for SRR11272867/SRR11272867.sra Written 60530886 spots for SRR11272867/SRR11272867.sra fastq に変換しました。 bowtie でマッピング中... Your job 14157983 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:13:04 60530886 reads; of these: 60530886 (100.00%) were unpaired; of these: 573321 (0.95%) aligned 0 times 48957167 (80.88%) aligned exactly 1 time 11000398 (18.17%) aligned >1 times 99.05% overall alignment rate Time searching: 00:13:04 Overall time: 00:13:04 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 13922657 / 59957565 = 0.2322 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 11:42:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 11:42:04: #1 read tag files... INFO @ Wed, 08 Dec 2021 11:42:04: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 11:42:10: 1000000 INFO @ Wed, 08 Dec 2021 11:42:16: 2000000 INFO @ Wed, 08 Dec 2021 11:42:21: 3000000 INFO @ Wed, 08 Dec 2021 11:42:27: 4000000 INFO @ Wed, 08 Dec 2021 11:42:32: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 11:42:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 11:42:34: #1 read tag files... INFO @ Wed, 08 Dec 2021 11:42:34: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 11:42:39: 6000000 INFO @ Wed, 08 Dec 2021 11:42:42: 1000000 INFO @ Wed, 08 Dec 2021 11:42:46: 7000000 INFO @ Wed, 08 Dec 2021 11:42:49: 2000000 INFO @ Wed, 08 Dec 2021 11:42:53: 8000000 INFO @ Wed, 08 Dec 2021 11:42:57: 3000000 INFO @ Wed, 08 Dec 2021 11:43:00: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 11:43:04: 4000000 INFO @ Wed, 08 Dec 2021 11:43:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 11:43:04: #1 read tag files... INFO @ Wed, 08 Dec 2021 11:43:04: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 11:43:07: 10000000 INFO @ Wed, 08 Dec 2021 11:43:12: 1000000 INFO @ Wed, 08 Dec 2021 11:43:12: 5000000 INFO @ Wed, 08 Dec 2021 11:43:14: 11000000 INFO @ Wed, 08 Dec 2021 11:43:20: 2000000 INFO @ Wed, 08 Dec 2021 11:43:20: 6000000 INFO @ Wed, 08 Dec 2021 11:43:21: 12000000 INFO @ Wed, 08 Dec 2021 11:43:28: 3000000 INFO @ Wed, 08 Dec 2021 11:43:28: 7000000 INFO @ Wed, 08 Dec 2021 11:43:28: 13000000 INFO @ Wed, 08 Dec 2021 11:43:36: 14000000 INFO @ Wed, 08 Dec 2021 11:43:36: 4000000 INFO @ Wed, 08 Dec 2021 11:43:36: 8000000 INFO @ Wed, 08 Dec 2021 11:43:43: 15000000 INFO @ Wed, 08 Dec 2021 11:43:43: 5000000 INFO @ Wed, 08 Dec 2021 11:43:44: 9000000 INFO @ Wed, 08 Dec 2021 11:43:50: 16000000 INFO @ Wed, 08 Dec 2021 11:43:51: 6000000 INFO @ Wed, 08 Dec 2021 11:43:53: 10000000 INFO @ Wed, 08 Dec 2021 11:43:57: 17000000 INFO @ Wed, 08 Dec 2021 11:43:59: 7000000 INFO @ Wed, 08 Dec 2021 11:44:01: 11000000 INFO @ Wed, 08 Dec 2021 11:44:04: 18000000 INFO @ Wed, 08 Dec 2021 11:44:07: 8000000 INFO @ Wed, 08 Dec 2021 11:44:09: 12000000 INFO @ Wed, 08 Dec 2021 11:44:11: 19000000 INFO @ Wed, 08 Dec 2021 11:44:15: 9000000 INFO @ Wed, 08 Dec 2021 11:44:17: 13000000 INFO @ Wed, 08 Dec 2021 11:44:18: 20000000 INFO @ Wed, 08 Dec 2021 11:44:23: 10000000 INFO @ Wed, 08 Dec 2021 11:44:25: 14000000 INFO @ Wed, 08 Dec 2021 11:44:25: 21000000 INFO @ Wed, 08 Dec 2021 11:44:30: 11000000 INFO @ Wed, 08 Dec 2021 11:44:33: 15000000 INFO @ Wed, 08 Dec 2021 11:44:33: 22000000 INFO @ Wed, 08 Dec 2021 11:44:38: 12000000 INFO @ Wed, 08 Dec 2021 11:44:40: 23000000 INFO @ Wed, 08 Dec 2021 11:44:40: 16000000 INFO @ Wed, 08 Dec 2021 11:44:45: 13000000 INFO @ Wed, 08 Dec 2021 11:44:47: 24000000 INFO @ Wed, 08 Dec 2021 11:44:48: 17000000 INFO @ Wed, 08 Dec 2021 11:44:53: 14000000 INFO @ Wed, 08 Dec 2021 11:44:54: 25000000 INFO @ Wed, 08 Dec 2021 11:44:56: 18000000 INFO @ Wed, 08 Dec 2021 11:45:00: 15000000 INFO @ Wed, 08 Dec 2021 11:45:01: 26000000 INFO @ Wed, 08 Dec 2021 11:45:03: 19000000 INFO @ Wed, 08 Dec 2021 11:45:08: 27000000 INFO @ Wed, 08 Dec 2021 11:45:08: 16000000 INFO @ Wed, 08 Dec 2021 11:45:11: 20000000 INFO @ Wed, 08 Dec 2021 11:45:15: 28000000 INFO @ Wed, 08 Dec 2021 11:45:15: 17000000 INFO @ Wed, 08 Dec 2021 11:45:19: 21000000 INFO @ Wed, 08 Dec 2021 11:45:22: 29000000 INFO @ Wed, 08 Dec 2021 11:45:23: 18000000 INFO @ Wed, 08 Dec 2021 11:45:26: 22000000 INFO @ Wed, 08 Dec 2021 11:45:29: 30000000 INFO @ Wed, 08 Dec 2021 11:45:30: 19000000 INFO @ Wed, 08 Dec 2021 11:45:34: 23000000 INFO @ Wed, 08 Dec 2021 11:45:36: 31000000 INFO @ Wed, 08 Dec 2021 11:45:38: 20000000 INFO @ Wed, 08 Dec 2021 11:45:42: 24000000 INFO @ Wed, 08 Dec 2021 11:45:43: 32000000 INFO @ Wed, 08 Dec 2021 11:45:46: 21000000 INFO @ Wed, 08 Dec 2021 11:45:49: 25000000 INFO @ Wed, 08 Dec 2021 11:45:50: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 11:45:54: 22000000 INFO @ Wed, 08 Dec 2021 11:45:57: 26000000 INFO @ Wed, 08 Dec 2021 11:45:57: 34000000 INFO @ Wed, 08 Dec 2021 11:46:02: 23000000 INFO @ Wed, 08 Dec 2021 11:46:05: 35000000 INFO @ Wed, 08 Dec 2021 11:46:05: 27000000 INFO @ Wed, 08 Dec 2021 11:46:10: 24000000 INFO @ Wed, 08 Dec 2021 11:46:12: 36000000 INFO @ Wed, 08 Dec 2021 11:46:13: 28000000 INFO @ Wed, 08 Dec 2021 11:46:18: 25000000 INFO @ Wed, 08 Dec 2021 11:46:20: 37000000 INFO @ Wed, 08 Dec 2021 11:46:21: 29000000 INFO @ Wed, 08 Dec 2021 11:46:26: 26000000 INFO @ Wed, 08 Dec 2021 11:46:27: 38000000 INFO @ Wed, 08 Dec 2021 11:46:28: 30000000 INFO @ Wed, 08 Dec 2021 11:46:34: 27000000 INFO @ Wed, 08 Dec 2021 11:46:34: 39000000 INFO @ Wed, 08 Dec 2021 11:46:36: 31000000 INFO @ Wed, 08 Dec 2021 11:46:41: 40000000 INFO @ Wed, 08 Dec 2021 11:46:41: 28000000 INFO @ Wed, 08 Dec 2021 11:46:43: 32000000 INFO @ Wed, 08 Dec 2021 11:46:48: 41000000 INFO @ Wed, 08 Dec 2021 11:46:49: 29000000 INFO @ Wed, 08 Dec 2021 11:46:51: 33000000 INFO @ Wed, 08 Dec 2021 11:46:55: 42000000 INFO @ Wed, 08 Dec 2021 11:46:57: 30000000 INFO @ Wed, 08 Dec 2021 11:46:59: 34000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 11:47:02: 43000000 INFO @ Wed, 08 Dec 2021 11:47:05: 31000000 INFO @ Wed, 08 Dec 2021 11:47:07: 35000000 INFO @ Wed, 08 Dec 2021 11:47:09: 44000000 INFO @ Wed, 08 Dec 2021 11:47:13: 32000000 INFO @ Wed, 08 Dec 2021 11:47:14: 36000000 INFO @ Wed, 08 Dec 2021 11:47:16: 45000000 INFO @ Wed, 08 Dec 2021 11:47:21: 33000000 INFO @ Wed, 08 Dec 2021 11:47:22: 37000000 INFO @ Wed, 08 Dec 2021 11:47:23: 46000000 INFO @ Wed, 08 Dec 2021 11:47:24: #1 tag size is determined as 50 bps INFO @ Wed, 08 Dec 2021 11:47:24: #1 tag size = 50 INFO @ Wed, 08 Dec 2021 11:47:24: #1 total tags in treatment: 46034908 INFO @ Wed, 08 Dec 2021 11:47:24: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 11:47:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 11:47:24: #1 tags after filtering in treatment: 46034908 INFO @ Wed, 08 Dec 2021 11:47:24: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 08 Dec 2021 11:47:24: #1 finished! INFO @ Wed, 08 Dec 2021 11:47:24: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 11:47:24: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 11:47:27: #2 number of paired peaks: 0 WARNING @ Wed, 08 Dec 2021 11:47:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 08 Dec 2021 11:47:27: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 11:47:29: 34000000 INFO @ Wed, 08 Dec 2021 11:47:29: 38000000 INFO @ Wed, 08 Dec 2021 11:47:36: 35000000 INFO @ Wed, 08 Dec 2021 11:47:37: 39000000 INFO @ Wed, 08 Dec 2021 11:47:44: 36000000 INFO @ Wed, 08 Dec 2021 11:47:45: 40000000 INFO @ Wed, 08 Dec 2021 11:47:52: 41000000 INFO @ Wed, 08 Dec 2021 11:47:52: 37000000 INFO @ Wed, 08 Dec 2021 11:48:00: 42000000 INFO @ Wed, 08 Dec 2021 11:48:00: 38000000 INFO @ Wed, 08 Dec 2021 11:48:07: 43000000 INFO @ Wed, 08 Dec 2021 11:48:08: 39000000 INFO @ Wed, 08 Dec 2021 11:48:15: 44000000 INFO @ Wed, 08 Dec 2021 11:48:16: 40000000 INFO @ Wed, 08 Dec 2021 11:48:23: 45000000 INFO @ Wed, 08 Dec 2021 11:48:23: 41000000 INFO @ Wed, 08 Dec 2021 11:48:31: 46000000 INFO @ Wed, 08 Dec 2021 11:48:31: 42000000 INFO @ Wed, 08 Dec 2021 11:48:32: #1 tag size is determined as 50 bps INFO @ Wed, 08 Dec 2021 11:48:32: #1 tag size = 50 INFO @ Wed, 08 Dec 2021 11:48:32: #1 total tags in treatment: 46034908 INFO @ Wed, 08 Dec 2021 11:48:32: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 11:48:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 11:48:32: #1 tags after filtering in treatment: 46034908 INFO @ Wed, 08 Dec 2021 11:48:32: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 08 Dec 2021 11:48:32: #1 finished! INFO @ Wed, 08 Dec 2021 11:48:32: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 11:48:32: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 11:48:35: #2 number of paired peaks: 0 WARNING @ Wed, 08 Dec 2021 11:48:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 08 Dec 2021 11:48:35: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 11:48:38: 43000000 INFO @ Wed, 08 Dec 2021 11:48:45: 44000000 INFO @ Wed, 08 Dec 2021 11:48:52: 45000000 INFO @ Wed, 08 Dec 2021 11:48:59: 46000000 INFO @ Wed, 08 Dec 2021 11:49:00: #1 tag size is determined as 50 bps INFO @ Wed, 08 Dec 2021 11:49:00: #1 tag size = 50 INFO @ Wed, 08 Dec 2021 11:49:00: #1 total tags in treatment: 46034908 INFO @ Wed, 08 Dec 2021 11:49:00: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 11:49:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 11:49:00: #1 tags after filtering in treatment: 46034908 INFO @ Wed, 08 Dec 2021 11:49:00: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 08 Dec 2021 11:49:00: #1 finished! INFO @ Wed, 08 Dec 2021 11:49:00: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 11:49:00: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 11:49:03: #2 number of paired peaks: 0 WARNING @ Wed, 08 Dec 2021 11:49:03: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 08 Dec 2021 11:49:03: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX7879252/SRX7879252.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling