Job ID = 9157782 sra ファイルのダウンロード中... Completed: 1410999K bytes transferred in 14 seconds (818980K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 54428125 spots for /home/okishinya/chipatlas/results/ce10/SRX707299/SRR1582082.sra Written 54428125 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:17:31 54428125 reads; of these: 54428125 (100.00%) were unpaired; of these: 1052747 (1.93%) aligned 0 times 44430587 (81.63%) aligned exactly 1 time 8944791 (16.43%) aligned >1 times 98.07% overall alignment rate Time searching: 00:17:31 Overall time: 00:17:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 13642547 / 53375378 = 0.2556 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 14:08:17: # Command line: callpeak -t SRX707299.bam -f BAM -g ce -n SRX707299.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX707299.05 # format = BAM # ChIP-seq file = ['SRX707299.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 14:08:17: #1 read tag files... INFO @ Tue, 27 Jun 2017 14:08:17: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 14:08:17: # Command line: callpeak -t SRX707299.bam -f BAM -g ce -n SRX707299.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX707299.10 # format = BAM # ChIP-seq file = ['SRX707299.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 14:08:17: #1 read tag files... INFO @ Tue, 27 Jun 2017 14:08:17: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 14:08:17: # Command line: callpeak -t SRX707299.bam -f BAM -g ce -n SRX707299.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX707299.20 # format = BAM # ChIP-seq file = ['SRX707299.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 14:08:17: #1 read tag files... INFO @ Tue, 27 Jun 2017 14:08:17: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 14:08:26: 1000000 INFO @ Tue, 27 Jun 2017 14:08:27: 1000000 INFO @ Tue, 27 Jun 2017 14:08:27: 1000000 INFO @ Tue, 27 Jun 2017 14:08:35: 2000000 INFO @ Tue, 27 Jun 2017 14:08:36: 2000000 INFO @ Tue, 27 Jun 2017 14:08:37: 2000000 INFO @ Tue, 27 Jun 2017 14:08:44: 3000000 INFO @ Tue, 27 Jun 2017 14:08:46: 3000000 INFO @ Tue, 27 Jun 2017 14:08:46: 3000000 INFO @ Tue, 27 Jun 2017 14:08:53: 4000000 INFO @ Tue, 27 Jun 2017 14:08:56: 4000000 INFO @ Tue, 27 Jun 2017 14:08:56: 4000000 INFO @ Tue, 27 Jun 2017 14:09:02: 5000000 INFO @ Tue, 27 Jun 2017 14:09:06: 5000000 INFO @ Tue, 27 Jun 2017 14:09:06: 5000000 INFO @ Tue, 27 Jun 2017 14:09:12: 6000000 INFO @ Tue, 27 Jun 2017 14:09:15: 6000000 INFO @ Tue, 27 Jun 2017 14:09:17: 6000000 INFO @ Tue, 27 Jun 2017 14:09:22: 7000000 INFO @ Tue, 27 Jun 2017 14:09:25: 7000000 INFO @ Tue, 27 Jun 2017 14:09:27: 7000000 INFO @ Tue, 27 Jun 2017 14:09:33: 8000000 INFO @ Tue, 27 Jun 2017 14:09:34: 8000000 INFO @ Tue, 27 Jun 2017 14:09:38: 8000000 INFO @ Tue, 27 Jun 2017 14:09:43: 9000000 INFO @ Tue, 27 Jun 2017 14:09:43: 9000000 INFO @ Tue, 27 Jun 2017 14:09:48: 9000000 INFO @ Tue, 27 Jun 2017 14:09:53: 10000000 INFO @ Tue, 27 Jun 2017 14:09:53: 10000000 INFO @ Tue, 27 Jun 2017 14:09:58: 10000000 INFO @ Tue, 27 Jun 2017 14:10:02: 11000000 INFO @ Tue, 27 Jun 2017 14:10:04: 11000000 INFO @ Tue, 27 Jun 2017 14:10:09: 11000000 INFO @ Tue, 27 Jun 2017 14:10:12: 12000000 INFO @ Tue, 27 Jun 2017 14:10:14: 12000000 INFO @ Tue, 27 Jun 2017 14:10:19: 12000000 INFO @ Tue, 27 Jun 2017 14:10:21: 13000000 INFO @ Tue, 27 Jun 2017 14:10:25: 13000000 INFO @ Tue, 27 Jun 2017 14:10:30: 13000000 INFO @ Tue, 27 Jun 2017 14:10:31: 14000000 INFO @ Tue, 27 Jun 2017 14:10:35: 14000000 INFO @ Tue, 27 Jun 2017 14:10:40: 14000000 INFO @ Tue, 27 Jun 2017 14:10:40: 15000000 INFO @ Tue, 27 Jun 2017 14:10:46: 15000000 INFO @ Tue, 27 Jun 2017 14:10:50: 16000000 INFO @ Tue, 27 Jun 2017 14:10:50: 15000000 INFO @ Tue, 27 Jun 2017 14:10:56: 16000000 INFO @ Tue, 27 Jun 2017 14:10:59: 17000000 INFO @ Tue, 27 Jun 2017 14:11:01: 16000000 INFO @ Tue, 27 Jun 2017 14:11:06: 17000000 INFO @ Tue, 27 Jun 2017 14:11:09: 18000000 INFO @ Tue, 27 Jun 2017 14:11:11: 17000000 INFO @ Tue, 27 Jun 2017 14:11:17: 18000000 INFO @ Tue, 27 Jun 2017 14:11:19: 19000000 INFO @ Tue, 27 Jun 2017 14:11:22: 18000000 INFO @ Tue, 27 Jun 2017 14:11:27: 19000000 INFO @ Tue, 27 Jun 2017 14:11:28: 20000000 INFO @ Tue, 27 Jun 2017 14:11:32: 19000000 INFO @ Tue, 27 Jun 2017 14:11:37: 20000000 INFO @ Tue, 27 Jun 2017 14:11:38: 21000000 INFO @ Tue, 27 Jun 2017 14:11:42: 20000000 INFO @ Tue, 27 Jun 2017 14:11:47: 22000000 INFO @ Tue, 27 Jun 2017 14:11:48: 21000000 INFO @ Tue, 27 Jun 2017 14:11:53: 21000000 INFO @ Tue, 27 Jun 2017 14:11:56: 23000000 INFO @ Tue, 27 Jun 2017 14:11:58: 22000000 INFO @ Tue, 27 Jun 2017 14:12:03: 22000000 INFO @ Tue, 27 Jun 2017 14:12:06: 24000000 INFO @ Tue, 27 Jun 2017 14:12:09: 23000000 INFO @ Tue, 27 Jun 2017 14:12:13: 23000000 INFO @ Tue, 27 Jun 2017 14:12:15: 25000000 INFO @ Tue, 27 Jun 2017 14:12:19: 24000000 INFO @ Tue, 27 Jun 2017 14:12:23: 26000000 INFO @ Tue, 27 Jun 2017 14:12:25: 24000000 INFO @ Tue, 27 Jun 2017 14:12:31: 25000000 INFO @ Tue, 27 Jun 2017 14:12:35: 27000000 INFO @ Tue, 27 Jun 2017 14:12:37: 25000000 INFO @ Tue, 27 Jun 2017 14:12:43: 26000000 INFO @ Tue, 27 Jun 2017 14:12:47: 28000000 INFO @ Tue, 27 Jun 2017 14:12:49: 26000000 INFO @ Tue, 27 Jun 2017 14:12:55: 27000000 INFO @ Tue, 27 Jun 2017 14:12:59: 29000000 INFO @ Tue, 27 Jun 2017 14:13:00: 27000000 INFO @ Tue, 27 Jun 2017 14:13:07: 28000000 INFO @ Tue, 27 Jun 2017 14:13:11: 30000000 INFO @ Tue, 27 Jun 2017 14:13:12: 28000000 INFO @ Tue, 27 Jun 2017 14:13:19: 29000000 INFO @ Tue, 27 Jun 2017 14:13:23: 31000000 INFO @ Tue, 27 Jun 2017 14:13:24: 29000000 INFO @ Tue, 27 Jun 2017 14:13:30: 30000000 INFO @ Tue, 27 Jun 2017 14:13:34: 32000000 INFO @ Tue, 27 Jun 2017 14:13:36: 30000000 INFO @ Tue, 27 Jun 2017 14:13:41: 31000000 INFO @ Tue, 27 Jun 2017 14:13:44: 33000000 INFO @ Tue, 27 Jun 2017 14:13:46: 31000000 INFO @ Tue, 27 Jun 2017 14:13:51: 32000000 INFO @ Tue, 27 Jun 2017 14:13:53: 34000000 INFO @ Tue, 27 Jun 2017 14:13:56: 32000000 INFO @ Tue, 27 Jun 2017 14:14:02: 33000000 INFO @ Tue, 27 Jun 2017 14:14:03: 35000000 INFO @ Tue, 27 Jun 2017 14:14:06: 33000000 INFO @ Tue, 27 Jun 2017 14:14:12: 34000000 INFO @ Tue, 27 Jun 2017 14:14:12: 36000000 INFO @ Tue, 27 Jun 2017 14:14:17: 34000000 INFO @ Tue, 27 Jun 2017 14:14:22: 37000000 INFO @ Tue, 27 Jun 2017 14:14:23: 35000000 INFO @ Tue, 27 Jun 2017 14:14:27: 35000000 INFO @ Tue, 27 Jun 2017 14:14:31: 38000000 INFO @ Tue, 27 Jun 2017 14:14:33: 36000000 INFO @ Tue, 27 Jun 2017 14:14:38: 36000000 INFO @ Tue, 27 Jun 2017 14:14:41: 39000000 INFO @ Tue, 27 Jun 2017 14:14:43: 37000000 INFO @ Tue, 27 Jun 2017 14:14:49: 37000000 INFO @ Tue, 27 Jun 2017 14:14:49: #1 tag size is determined as 51 bps INFO @ Tue, 27 Jun 2017 14:14:49: #1 tag size = 51 INFO @ Tue, 27 Jun 2017 14:14:49: #1 total tags in treatment: 39732831 INFO @ Tue, 27 Jun 2017 14:14:49: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 14:14:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 14:14:50: #1 tags after filtering in treatment: 39732831 INFO @ Tue, 27 Jun 2017 14:14:50: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 14:14:50: #1 finished! INFO @ Tue, 27 Jun 2017 14:14:50: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 14:14:50: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 14:14:52: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 14:14:52: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 14:14:52: Process for pairing-model is terminated! cat: SRX707299.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX707299.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX707299.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX707299.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 14:14:54: 38000000 INFO @ Tue, 27 Jun 2017 14:14:58: 38000000 INFO @ Tue, 27 Jun 2017 14:15:04: 39000000 INFO @ Tue, 27 Jun 2017 14:15:08: 39000000 INFO @ Tue, 27 Jun 2017 14:15:11: #1 tag size is determined as 51 bps INFO @ Tue, 27 Jun 2017 14:15:11: #1 tag size = 51 INFO @ Tue, 27 Jun 2017 14:15:11: #1 total tags in treatment: 39732831 INFO @ Tue, 27 Jun 2017 14:15:11: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 14:15:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 14:15:12: #1 tags after filtering in treatment: 39732831 INFO @ Tue, 27 Jun 2017 14:15:12: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 14:15:12: #1 finished! INFO @ Tue, 27 Jun 2017 14:15:12: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 14:15:12: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 14:15:14: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 14:15:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 14:15:14: Process for pairing-model is terminated! cat: SRX707299.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX707299.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX707299.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX707299.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 14:15:15: #1 tag size is determined as 51 bps INFO @ Tue, 27 Jun 2017 14:15:15: #1 tag size = 51 INFO @ Tue, 27 Jun 2017 14:15:15: #1 total tags in treatment: 39732831 INFO @ Tue, 27 Jun 2017 14:15:15: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 14:15:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 14:15:16: #1 tags after filtering in treatment: 39732831 INFO @ Tue, 27 Jun 2017 14:15:16: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 14:15:16: #1 finished! INFO @ Tue, 27 Jun 2017 14:15:16: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 14:15:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 14:15:18: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 14:15:18: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 14:15:18: Process for pairing-model is terminated! cat: SRX707299.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX707299.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX707299.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX707299.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。