Job ID = 5720228 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 34,322,942 reads read : 68,645,884 reads written : 68,645,884 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:00:44 34322942 reads; of these: 34322942 (100.00%) were paired; of these: 17169793 (50.02%) aligned concordantly 0 times 14463628 (42.14%) aligned concordantly exactly 1 time 2689521 (7.84%) aligned concordantly >1 times ---- 17169793 pairs aligned concordantly 0 times; of these: 10086856 (58.75%) aligned discordantly 1 time ---- 7082937 pairs aligned 0 times concordantly or discordantly; of these: 14165874 mates make up the pairs; of these: 10600463 (74.83%) aligned 0 times 1735593 (12.25%) aligned exactly 1 time 1829818 (12.92%) aligned >1 times 84.56% overall alignment rate Time searching: 01:00:44 Overall time: 01:00:44 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4246131 / 26392856 = 0.1609 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:18:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:18:09: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:18:09: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:18:18: 1000000 INFO @ Thu, 16 Apr 2020 00:18:26: 2000000 INFO @ Thu, 16 Apr 2020 00:18:35: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:18:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:18:39: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:18:39: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:18:44: 4000000 INFO @ Thu, 16 Apr 2020 00:18:48: 1000000 INFO @ Thu, 16 Apr 2020 00:18:53: 5000000 INFO @ Thu, 16 Apr 2020 00:18:57: 2000000 INFO @ Thu, 16 Apr 2020 00:19:02: 6000000 INFO @ Thu, 16 Apr 2020 00:19:07: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:19:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:19:09: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:19:09: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:19:12: 7000000 INFO @ Thu, 16 Apr 2020 00:19:17: 4000000 INFO @ Thu, 16 Apr 2020 00:19:20: 1000000 INFO @ Thu, 16 Apr 2020 00:19:22: 8000000 INFO @ Thu, 16 Apr 2020 00:19:27: 5000000 INFO @ Thu, 16 Apr 2020 00:19:30: 2000000 INFO @ Thu, 16 Apr 2020 00:19:33: 9000000 INFO @ Thu, 16 Apr 2020 00:19:37: 6000000 INFO @ Thu, 16 Apr 2020 00:19:40: 3000000 INFO @ Thu, 16 Apr 2020 00:19:43: 10000000 INFO @ Thu, 16 Apr 2020 00:19:47: 7000000 INFO @ Thu, 16 Apr 2020 00:19:50: 4000000 INFO @ Thu, 16 Apr 2020 00:19:53: 11000000 INFO @ Thu, 16 Apr 2020 00:19:57: 8000000 INFO @ Thu, 16 Apr 2020 00:20:00: 5000000 INFO @ Thu, 16 Apr 2020 00:20:03: 12000000 INFO @ Thu, 16 Apr 2020 00:20:07: 9000000 INFO @ Thu, 16 Apr 2020 00:20:11: 6000000 INFO @ Thu, 16 Apr 2020 00:20:13: 13000000 INFO @ Thu, 16 Apr 2020 00:20:17: 10000000 INFO @ Thu, 16 Apr 2020 00:20:21: 7000000 INFO @ Thu, 16 Apr 2020 00:20:23: 14000000 INFO @ Thu, 16 Apr 2020 00:20:27: 11000000 INFO @ Thu, 16 Apr 2020 00:20:31: 8000000 INFO @ Thu, 16 Apr 2020 00:20:33: 15000000 INFO @ Thu, 16 Apr 2020 00:20:37: 12000000 INFO @ Thu, 16 Apr 2020 00:20:41: 9000000 INFO @ Thu, 16 Apr 2020 00:20:43: 16000000 INFO @ Thu, 16 Apr 2020 00:20:47: 13000000 INFO @ Thu, 16 Apr 2020 00:20:51: 10000000 INFO @ Thu, 16 Apr 2020 00:20:53: 17000000 INFO @ Thu, 16 Apr 2020 00:20:56: 14000000 INFO @ Thu, 16 Apr 2020 00:21:01: 11000000 INFO @ Thu, 16 Apr 2020 00:21:03: 18000000 INFO @ Thu, 16 Apr 2020 00:21:06: 15000000 INFO @ Thu, 16 Apr 2020 00:21:10: 12000000 INFO @ Thu, 16 Apr 2020 00:21:13: 19000000 INFO @ Thu, 16 Apr 2020 00:21:16: 16000000 INFO @ Thu, 16 Apr 2020 00:21:20: 13000000 INFO @ Thu, 16 Apr 2020 00:21:22: 20000000 INFO @ Thu, 16 Apr 2020 00:21:25: 17000000 INFO @ Thu, 16 Apr 2020 00:21:30: 14000000 INFO @ Thu, 16 Apr 2020 00:21:32: 21000000 INFO @ Thu, 16 Apr 2020 00:21:35: 18000000 INFO @ Thu, 16 Apr 2020 00:21:39: 15000000 INFO @ Thu, 16 Apr 2020 00:21:42: 22000000 INFO @ Thu, 16 Apr 2020 00:21:44: 19000000 INFO @ Thu, 16 Apr 2020 00:21:49: 16000000 INFO @ Thu, 16 Apr 2020 00:21:52: 23000000 INFO @ Thu, 16 Apr 2020 00:21:54: 20000000 INFO @ Thu, 16 Apr 2020 00:21:59: 17000000 INFO @ Thu, 16 Apr 2020 00:22:02: 24000000 INFO @ Thu, 16 Apr 2020 00:22:04: 21000000 INFO @ Thu, 16 Apr 2020 00:22:08: 18000000 INFO @ Thu, 16 Apr 2020 00:22:12: 25000000 INFO @ Thu, 16 Apr 2020 00:22:13: 22000000 INFO @ Thu, 16 Apr 2020 00:22:17: 19000000 INFO @ Thu, 16 Apr 2020 00:22:22: 26000000 INFO @ Thu, 16 Apr 2020 00:22:23: 23000000 INFO @ Thu, 16 Apr 2020 00:22:27: 20000000 INFO @ Thu, 16 Apr 2020 00:22:32: 27000000 INFO @ Thu, 16 Apr 2020 00:22:32: 24000000 INFO @ Thu, 16 Apr 2020 00:22:36: 21000000 INFO @ Thu, 16 Apr 2020 00:22:41: 28000000 INFO @ Thu, 16 Apr 2020 00:22:42: 25000000 INFO @ Thu, 16 Apr 2020 00:22:46: 22000000 INFO @ Thu, 16 Apr 2020 00:22:51: 26000000 INFO @ Thu, 16 Apr 2020 00:22:51: 29000000 INFO @ Thu, 16 Apr 2020 00:22:55: 23000000 INFO @ Thu, 16 Apr 2020 00:23:00: 27000000 INFO @ Thu, 16 Apr 2020 00:23:01: 30000000 INFO @ Thu, 16 Apr 2020 00:23:05: 24000000 INFO @ Thu, 16 Apr 2020 00:23:09: 28000000 INFO @ Thu, 16 Apr 2020 00:23:11: 31000000 INFO @ Thu, 16 Apr 2020 00:23:14: 25000000 INFO @ Thu, 16 Apr 2020 00:23:18: 29000000 INFO @ Thu, 16 Apr 2020 00:23:20: 32000000 INFO @ Thu, 16 Apr 2020 00:23:23: 26000000 INFO @ Thu, 16 Apr 2020 00:23:28: 30000000 INFO @ Thu, 16 Apr 2020 00:23:30: 33000000 INFO @ Thu, 16 Apr 2020 00:23:33: 27000000 INFO @ Thu, 16 Apr 2020 00:23:37: 31000000 INFO @ Thu, 16 Apr 2020 00:23:40: 34000000 INFO @ Thu, 16 Apr 2020 00:23:42: 28000000 INFO @ Thu, 16 Apr 2020 00:23:46: 32000000 INFO @ Thu, 16 Apr 2020 00:23:49: 35000000 INFO @ Thu, 16 Apr 2020 00:23:51: 29000000 INFO @ Thu, 16 Apr 2020 00:23:56: 33000000 INFO @ Thu, 16 Apr 2020 00:23:59: 36000000 INFO @ Thu, 16 Apr 2020 00:24:00: 30000000 INFO @ Thu, 16 Apr 2020 00:24:05: 34000000 INFO @ Thu, 16 Apr 2020 00:24:08: 37000000 INFO @ Thu, 16 Apr 2020 00:24:09: 31000000 INFO @ Thu, 16 Apr 2020 00:24:14: 35000000 INFO @ Thu, 16 Apr 2020 00:24:18: 38000000 INFO @ Thu, 16 Apr 2020 00:24:19: 32000000 INFO @ Thu, 16 Apr 2020 00:24:22: 36000000 INFO @ Thu, 16 Apr 2020 00:24:28: 39000000 INFO @ Thu, 16 Apr 2020 00:24:28: 33000000 INFO @ Thu, 16 Apr 2020 00:24:31: 37000000 INFO @ Thu, 16 Apr 2020 00:24:37: 34000000 INFO @ Thu, 16 Apr 2020 00:24:38: 40000000 INFO @ Thu, 16 Apr 2020 00:24:41: 38000000 INFO @ Thu, 16 Apr 2020 00:24:46: 35000000 INFO @ Thu, 16 Apr 2020 00:24:48: 41000000 INFO @ Thu, 16 Apr 2020 00:24:50: 39000000 INFO @ Thu, 16 Apr 2020 00:24:55: 36000000 INFO @ Thu, 16 Apr 2020 00:24:58: 42000000 INFO @ Thu, 16 Apr 2020 00:24:59: 40000000 INFO @ Thu, 16 Apr 2020 00:25:03: 37000000 INFO @ Thu, 16 Apr 2020 00:25:07: 43000000 INFO @ Thu, 16 Apr 2020 00:25:09: 41000000 INFO @ Thu, 16 Apr 2020 00:25:12: 38000000 INFO @ Thu, 16 Apr 2020 00:25:17: 44000000 INFO @ Thu, 16 Apr 2020 00:25:18: 42000000 INFO @ Thu, 16 Apr 2020 00:25:22: 39000000 INFO @ Thu, 16 Apr 2020 00:25:26: 45000000 INFO @ Thu, 16 Apr 2020 00:25:27: 43000000 INFO @ Thu, 16 Apr 2020 00:25:31: 40000000 INFO @ Thu, 16 Apr 2020 00:25:36: 46000000 INFO @ Thu, 16 Apr 2020 00:25:36: 44000000 INFO @ Thu, 16 Apr 2020 00:25:41: 41000000 INFO @ Thu, 16 Apr 2020 00:25:45: 45000000 INFO @ Thu, 16 Apr 2020 00:25:45: 47000000 INFO @ Thu, 16 Apr 2020 00:25:50: 42000000 INFO @ Thu, 16 Apr 2020 00:25:54: 46000000 INFO @ Thu, 16 Apr 2020 00:25:55: 48000000 INFO @ Thu, 16 Apr 2020 00:25:59: 43000000 INFO @ Thu, 16 Apr 2020 00:26:03: 47000000 INFO @ Thu, 16 Apr 2020 00:26:04: 49000000 INFO @ Thu, 16 Apr 2020 00:26:08: 44000000 INFO @ Thu, 16 Apr 2020 00:26:09: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:26:09: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:26:09: #1 total tags in treatment: 14272750 INFO @ Thu, 16 Apr 2020 00:26:09: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:26:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:26:10: #1 tags after filtering in treatment: 12209070 INFO @ Thu, 16 Apr 2020 00:26:10: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:26:10: #1 finished! INFO @ Thu, 16 Apr 2020 00:26:10: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:26:10: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:26:10: #2 number of paired peaks: 253 WARNING @ Thu, 16 Apr 2020 00:26:10: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Thu, 16 Apr 2020 00:26:10: start model_add_line... INFO @ Thu, 16 Apr 2020 00:26:10: start X-correlation... INFO @ Thu, 16 Apr 2020 00:26:10: end of X-cor INFO @ Thu, 16 Apr 2020 00:26:10: #2 finished! INFO @ Thu, 16 Apr 2020 00:26:10: #2 predicted fragment length is 205 bps INFO @ Thu, 16 Apr 2020 00:26:10: #2 alternative fragment length(s) may be 205 bps INFO @ Thu, 16 Apr 2020 00:26:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.05_model.r WARNING @ Thu, 16 Apr 2020 00:26:10: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:26:10: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Thu, 16 Apr 2020 00:26:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:26:10: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:26:10: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:26:12: 48000000 INFO @ Thu, 16 Apr 2020 00:26:17: 45000000 INFO @ Thu, 16 Apr 2020 00:26:21: 49000000 INFO @ Thu, 16 Apr 2020 00:26:26: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:26:26: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:26:26: #1 total tags in treatment: 14272750 INFO @ Thu, 16 Apr 2020 00:26:26: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:26:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:26:26: 46000000 INFO @ Thu, 16 Apr 2020 00:26:26: #1 tags after filtering in treatment: 12209070 INFO @ Thu, 16 Apr 2020 00:26:26: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:26:26: #1 finished! INFO @ Thu, 16 Apr 2020 00:26:26: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:26:26: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:26:27: #2 number of paired peaks: 253 WARNING @ Thu, 16 Apr 2020 00:26:27: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Thu, 16 Apr 2020 00:26:27: start model_add_line... INFO @ Thu, 16 Apr 2020 00:26:27: start X-correlation... INFO @ Thu, 16 Apr 2020 00:26:27: end of X-cor INFO @ Thu, 16 Apr 2020 00:26:27: #2 finished! INFO @ Thu, 16 Apr 2020 00:26:27: #2 predicted fragment length is 205 bps INFO @ Thu, 16 Apr 2020 00:26:27: #2 alternative fragment length(s) may be 205 bps INFO @ Thu, 16 Apr 2020 00:26:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.10_model.r WARNING @ Thu, 16 Apr 2020 00:26:27: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:26:27: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Thu, 16 Apr 2020 00:26:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:26:27: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:26:27: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:26:34: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:26:34: 47000000 INFO @ Thu, 16 Apr 2020 00:26:43: 48000000 INFO @ Thu, 16 Apr 2020 00:26:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.05_peaks.xls INFO @ Thu, 16 Apr 2020 00:26:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:26:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.05_summits.bed INFO @ Thu, 16 Apr 2020 00:26:45: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (452 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:26:51: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:26:51: 49000000 INFO @ Thu, 16 Apr 2020 00:26:56: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:26:56: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:26:56: #1 total tags in treatment: 14272750 INFO @ Thu, 16 Apr 2020 00:26:56: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:26:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:26:56: #1 tags after filtering in treatment: 12209070 INFO @ Thu, 16 Apr 2020 00:26:56: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:26:56: #1 finished! INFO @ Thu, 16 Apr 2020 00:26:56: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:26:56: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:26:57: #2 number of paired peaks: 253 WARNING @ Thu, 16 Apr 2020 00:26:57: Fewer paired peaks (253) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 253 pairs to build model! INFO @ Thu, 16 Apr 2020 00:26:57: start model_add_line... INFO @ Thu, 16 Apr 2020 00:26:57: start X-correlation... INFO @ Thu, 16 Apr 2020 00:26:57: end of X-cor INFO @ Thu, 16 Apr 2020 00:26:57: #2 finished! INFO @ Thu, 16 Apr 2020 00:26:57: #2 predicted fragment length is 205 bps INFO @ Thu, 16 Apr 2020 00:26:57: #2 alternative fragment length(s) may be 205 bps INFO @ Thu, 16 Apr 2020 00:26:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.20_model.r WARNING @ Thu, 16 Apr 2020 00:26:57: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:26:57: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Thu, 16 Apr 2020 00:26:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:26:57: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:26:57: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 00:27:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:27:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:27:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.10_summits.bed INFO @ Thu, 16 Apr 2020 00:27:02: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (316 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:27:21: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:27:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:27:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:27:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619600/SRX6619600.20_summits.bed INFO @ Thu, 16 Apr 2020 00:27:32: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (212 records, 4 fields): 1 millis CompletedMACS2peakCalling BigWig に変換しました。