Job ID = 5720216 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:32:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:32:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:58:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:58:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:05:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:24:42 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:35:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:40:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:43:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:45:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:51:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:54:11 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 63,031,761 reads read : 126,063,522 reads written : 126,063,522 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:21:43 63031761 reads; of these: 63031761 (100.00%) were paired; of these: 23023747 (36.53%) aligned concordantly 0 times 30430705 (48.28%) aligned concordantly exactly 1 time 9577309 (15.19%) aligned concordantly >1 times ---- 23023747 pairs aligned concordantly 0 times; of these: 13932334 (60.51%) aligned discordantly 1 time ---- 9091413 pairs aligned 0 times concordantly or discordantly; of these: 18182826 mates make up the pairs; of these: 8264471 (45.45%) aligned 0 times 3324522 (18.28%) aligned exactly 1 time 6593833 (36.26%) aligned >1 times 93.44% overall alignment rate Time searching: 02:21:43 Overall time: 02:21:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 88 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 8501673 / 53683995 = 0.1584 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:13:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:13:18: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:13:18: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:13:24: 1000000 INFO @ Thu, 16 Apr 2020 02:13:30: 2000000 INFO @ Thu, 16 Apr 2020 02:13:36: 3000000 INFO @ Thu, 16 Apr 2020 02:13:42: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:13:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:13:48: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:13:48: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:13:48: 5000000 INFO @ Thu, 16 Apr 2020 02:13:54: 1000000 INFO @ Thu, 16 Apr 2020 02:13:55: 6000000 INFO @ Thu, 16 Apr 2020 02:14:00: 2000000 INFO @ Thu, 16 Apr 2020 02:14:01: 7000000 INFO @ Thu, 16 Apr 2020 02:14:07: 3000000 INFO @ Thu, 16 Apr 2020 02:14:07: 8000000 INFO @ Thu, 16 Apr 2020 02:14:13: 4000000 INFO @ Thu, 16 Apr 2020 02:14:14: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 02:14:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 02:14:18: #1 read tag files... INFO @ Thu, 16 Apr 2020 02:14:18: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 02:14:20: 5000000 INFO @ Thu, 16 Apr 2020 02:14:21: 10000000 INFO @ Thu, 16 Apr 2020 02:14:25: 1000000 INFO @ Thu, 16 Apr 2020 02:14:27: 6000000 INFO @ Thu, 16 Apr 2020 02:14:27: 11000000 INFO @ Thu, 16 Apr 2020 02:14:32: 2000000 INFO @ Thu, 16 Apr 2020 02:14:33: 7000000 INFO @ Thu, 16 Apr 2020 02:14:34: 12000000 INFO @ Thu, 16 Apr 2020 02:14:39: 3000000 INFO @ Thu, 16 Apr 2020 02:14:40: 8000000 INFO @ Thu, 16 Apr 2020 02:14:41: 13000000 INFO @ Thu, 16 Apr 2020 02:14:46: 4000000 INFO @ Thu, 16 Apr 2020 02:14:47: 9000000 INFO @ Thu, 16 Apr 2020 02:14:48: 14000000 INFO @ Thu, 16 Apr 2020 02:14:53: 5000000 INFO @ Thu, 16 Apr 2020 02:14:53: 10000000 INFO @ Thu, 16 Apr 2020 02:14:54: 15000000 INFO @ Thu, 16 Apr 2020 02:15:00: 6000000 INFO @ Thu, 16 Apr 2020 02:15:00: 11000000 INFO @ Thu, 16 Apr 2020 02:15:01: 16000000 INFO @ Thu, 16 Apr 2020 02:15:06: 7000000 INFO @ Thu, 16 Apr 2020 02:15:07: 12000000 INFO @ Thu, 16 Apr 2020 02:15:08: 17000000 INFO @ Thu, 16 Apr 2020 02:15:13: 8000000 INFO @ Thu, 16 Apr 2020 02:15:13: 13000000 INFO @ Thu, 16 Apr 2020 02:15:14: 18000000 INFO @ Thu, 16 Apr 2020 02:15:20: 14000000 INFO @ Thu, 16 Apr 2020 02:15:20: 9000000 INFO @ Thu, 16 Apr 2020 02:15:21: 19000000 INFO @ Thu, 16 Apr 2020 02:15:26: 15000000 INFO @ Thu, 16 Apr 2020 02:15:27: 10000000 INFO @ Thu, 16 Apr 2020 02:15:28: 20000000 INFO @ Thu, 16 Apr 2020 02:15:33: 16000000 INFO @ Thu, 16 Apr 2020 02:15:34: 11000000 INFO @ Thu, 16 Apr 2020 02:15:35: 21000000 INFO @ Thu, 16 Apr 2020 02:15:39: 17000000 INFO @ Thu, 16 Apr 2020 02:15:40: 12000000 INFO @ Thu, 16 Apr 2020 02:15:41: 22000000 INFO @ Thu, 16 Apr 2020 02:15:45: 18000000 INFO @ Thu, 16 Apr 2020 02:15:47: 13000000 INFO @ Thu, 16 Apr 2020 02:15:48: 23000000 INFO @ Thu, 16 Apr 2020 02:15:52: 19000000 INFO @ Thu, 16 Apr 2020 02:15:54: 14000000 INFO @ Thu, 16 Apr 2020 02:15:55: 24000000 INFO @ Thu, 16 Apr 2020 02:15:58: 20000000 INFO @ Thu, 16 Apr 2020 02:16:01: 15000000 INFO @ Thu, 16 Apr 2020 02:16:02: 25000000 INFO @ Thu, 16 Apr 2020 02:16:05: 21000000 INFO @ Thu, 16 Apr 2020 02:16:08: 16000000 INFO @ Thu, 16 Apr 2020 02:16:09: 26000000 INFO @ Thu, 16 Apr 2020 02:16:12: 22000000 INFO @ Thu, 16 Apr 2020 02:16:15: 17000000 INFO @ Thu, 16 Apr 2020 02:16:15: 27000000 INFO @ Thu, 16 Apr 2020 02:16:18: 23000000 INFO @ Thu, 16 Apr 2020 02:16:21: 18000000 INFO @ Thu, 16 Apr 2020 02:16:22: 28000000 INFO @ Thu, 16 Apr 2020 02:16:25: 24000000 INFO @ Thu, 16 Apr 2020 02:16:28: 19000000 INFO @ Thu, 16 Apr 2020 02:16:29: 29000000 INFO @ Thu, 16 Apr 2020 02:16:31: 25000000 INFO @ Thu, 16 Apr 2020 02:16:35: 20000000 INFO @ Thu, 16 Apr 2020 02:16:36: 30000000 INFO @ Thu, 16 Apr 2020 02:16:38: 26000000 INFO @ Thu, 16 Apr 2020 02:16:42: 21000000 INFO @ Thu, 16 Apr 2020 02:16:43: 31000000 INFO @ Thu, 16 Apr 2020 02:16:45: 27000000 INFO @ Thu, 16 Apr 2020 02:16:48: 22000000 INFO @ Thu, 16 Apr 2020 02:16:49: 32000000 INFO @ Thu, 16 Apr 2020 02:16:51: 28000000 INFO @ Thu, 16 Apr 2020 02:16:55: 23000000 INFO @ Thu, 16 Apr 2020 02:16:56: 33000000 INFO @ Thu, 16 Apr 2020 02:16:58: 29000000 INFO @ Thu, 16 Apr 2020 02:17:02: 24000000 INFO @ Thu, 16 Apr 2020 02:17:03: 34000000 INFO @ Thu, 16 Apr 2020 02:17:04: 30000000 INFO @ Thu, 16 Apr 2020 02:17:09: 25000000 INFO @ Thu, 16 Apr 2020 02:17:10: 35000000 INFO @ Thu, 16 Apr 2020 02:17:11: 31000000 INFO @ Thu, 16 Apr 2020 02:17:15: 26000000 INFO @ Thu, 16 Apr 2020 02:17:16: 36000000 INFO @ Thu, 16 Apr 2020 02:17:17: 32000000 INFO @ Thu, 16 Apr 2020 02:17:22: 27000000 INFO @ Thu, 16 Apr 2020 02:17:23: 37000000 INFO @ Thu, 16 Apr 2020 02:17:24: 33000000 INFO @ Thu, 16 Apr 2020 02:17:29: 28000000 INFO @ Thu, 16 Apr 2020 02:17:30: 38000000 INFO @ Thu, 16 Apr 2020 02:17:30: 34000000 INFO @ Thu, 16 Apr 2020 02:17:36: 29000000 INFO @ Thu, 16 Apr 2020 02:17:36: 39000000 INFO @ Thu, 16 Apr 2020 02:17:37: 35000000 INFO @ Thu, 16 Apr 2020 02:17:43: 30000000 INFO @ Thu, 16 Apr 2020 02:17:43: 40000000 INFO @ Thu, 16 Apr 2020 02:17:43: 36000000 INFO @ Thu, 16 Apr 2020 02:17:49: 31000000 INFO @ Thu, 16 Apr 2020 02:17:50: 41000000 INFO @ Thu, 16 Apr 2020 02:17:50: 37000000 INFO @ Thu, 16 Apr 2020 02:17:56: 32000000 INFO @ Thu, 16 Apr 2020 02:17:56: 38000000 INFO @ Thu, 16 Apr 2020 02:17:56: 42000000 INFO @ Thu, 16 Apr 2020 02:18:03: 33000000 INFO @ Thu, 16 Apr 2020 02:18:03: 39000000 INFO @ Thu, 16 Apr 2020 02:18:03: 43000000 INFO @ Thu, 16 Apr 2020 02:18:09: 40000000 INFO @ Thu, 16 Apr 2020 02:18:09: 34000000 INFO @ Thu, 16 Apr 2020 02:18:10: 44000000 INFO @ Thu, 16 Apr 2020 02:18:16: 41000000 INFO @ Thu, 16 Apr 2020 02:18:16: 35000000 INFO @ Thu, 16 Apr 2020 02:18:16: 45000000 INFO @ Thu, 16 Apr 2020 02:18:23: 42000000 INFO @ Thu, 16 Apr 2020 02:18:23: 36000000 INFO @ Thu, 16 Apr 2020 02:18:23: 46000000 INFO @ Thu, 16 Apr 2020 02:18:29: 43000000 INFO @ Thu, 16 Apr 2020 02:18:30: 37000000 INFO @ Thu, 16 Apr 2020 02:18:30: 47000000 INFO @ Thu, 16 Apr 2020 02:18:36: 44000000 INFO @ Thu, 16 Apr 2020 02:18:36: 38000000 INFO @ Thu, 16 Apr 2020 02:18:36: 48000000 INFO @ Thu, 16 Apr 2020 02:18:42: 45000000 INFO @ Thu, 16 Apr 2020 02:18:43: 39000000 INFO @ Thu, 16 Apr 2020 02:18:43: 49000000 INFO @ Thu, 16 Apr 2020 02:18:49: 46000000 INFO @ Thu, 16 Apr 2020 02:18:49: 50000000 INFO @ Thu, 16 Apr 2020 02:18:49: 40000000 INFO @ Thu, 16 Apr 2020 02:18:55: 47000000 INFO @ Thu, 16 Apr 2020 02:18:56: 51000000 INFO @ Thu, 16 Apr 2020 02:18:56: 41000000 INFO @ Thu, 16 Apr 2020 02:19:02: 48000000 INFO @ Thu, 16 Apr 2020 02:19:02: 52000000 INFO @ Thu, 16 Apr 2020 02:19:03: 42000000 INFO @ Thu, 16 Apr 2020 02:19:08: 49000000 INFO @ Thu, 16 Apr 2020 02:19:09: 53000000 INFO @ Thu, 16 Apr 2020 02:19:09: 43000000 INFO @ Thu, 16 Apr 2020 02:19:14: 50000000 INFO @ Thu, 16 Apr 2020 02:19:15: 54000000 INFO @ Thu, 16 Apr 2020 02:19:16: 44000000 INFO @ Thu, 16 Apr 2020 02:19:21: 51000000 INFO @ Thu, 16 Apr 2020 02:19:21: 55000000 INFO @ Thu, 16 Apr 2020 02:19:23: 45000000 INFO @ Thu, 16 Apr 2020 02:19:27: 52000000 INFO @ Thu, 16 Apr 2020 02:19:28: 56000000 INFO @ Thu, 16 Apr 2020 02:19:30: 46000000 INFO @ Thu, 16 Apr 2020 02:19:33: 53000000 INFO @ Thu, 16 Apr 2020 02:19:34: 57000000 INFO @ Thu, 16 Apr 2020 02:19:36: 47000000 INFO @ Thu, 16 Apr 2020 02:19:40: 54000000 INFO @ Thu, 16 Apr 2020 02:19:41: 58000000 INFO @ Thu, 16 Apr 2020 02:19:43: 48000000 INFO @ Thu, 16 Apr 2020 02:19:46: 55000000 INFO @ Thu, 16 Apr 2020 02:19:47: 59000000 INFO @ Thu, 16 Apr 2020 02:19:49: 49000000 INFO @ Thu, 16 Apr 2020 02:19:53: 56000000 INFO @ Thu, 16 Apr 2020 02:19:54: 60000000 INFO @ Thu, 16 Apr 2020 02:19:56: 50000000 INFO @ Thu, 16 Apr 2020 02:19:59: 57000000 INFO @ Thu, 16 Apr 2020 02:20:00: 61000000 INFO @ Thu, 16 Apr 2020 02:20:02: 51000000 INFO @ Thu, 16 Apr 2020 02:20:05: 58000000 INFO @ Thu, 16 Apr 2020 02:20:07: 62000000 INFO @ Thu, 16 Apr 2020 02:20:09: 52000000 INFO @ Thu, 16 Apr 2020 02:20:12: 59000000 INFO @ Thu, 16 Apr 2020 02:20:13: 63000000 INFO @ Thu, 16 Apr 2020 02:20:15: 53000000 INFO @ Thu, 16 Apr 2020 02:20:18: 60000000 INFO @ Thu, 16 Apr 2020 02:20:20: 64000000 INFO @ Thu, 16 Apr 2020 02:20:22: 54000000 INFO @ Thu, 16 Apr 2020 02:20:24: 61000000 INFO @ Thu, 16 Apr 2020 02:20:26: 65000000 INFO @ Thu, 16 Apr 2020 02:20:28: 55000000 INFO @ Thu, 16 Apr 2020 02:20:31: 62000000 INFO @ Thu, 16 Apr 2020 02:20:33: 66000000 INFO @ Thu, 16 Apr 2020 02:20:35: 56000000 INFO @ Thu, 16 Apr 2020 02:20:37: 63000000 INFO @ Thu, 16 Apr 2020 02:20:39: 67000000 INFO @ Thu, 16 Apr 2020 02:20:42: 57000000 INFO @ Thu, 16 Apr 2020 02:20:43: 64000000 INFO @ Thu, 16 Apr 2020 02:20:46: 68000000 INFO @ Thu, 16 Apr 2020 02:20:48: 58000000 INFO @ Thu, 16 Apr 2020 02:20:50: 65000000 INFO @ Thu, 16 Apr 2020 02:20:52: 69000000 INFO @ Thu, 16 Apr 2020 02:20:55: 59000000 INFO @ Thu, 16 Apr 2020 02:20:56: 66000000 INFO @ Thu, 16 Apr 2020 02:20:59: 70000000 INFO @ Thu, 16 Apr 2020 02:21:01: 60000000 INFO @ Thu, 16 Apr 2020 02:21:03: 67000000 INFO @ Thu, 16 Apr 2020 02:21:05: 71000000 INFO @ Thu, 16 Apr 2020 02:21:08: 61000000 INFO @ Thu, 16 Apr 2020 02:21:09: 68000000 INFO @ Thu, 16 Apr 2020 02:21:12: 72000000 INFO @ Thu, 16 Apr 2020 02:21:14: 62000000 INFO @ Thu, 16 Apr 2020 02:21:15: 69000000 INFO @ Thu, 16 Apr 2020 02:21:18: 73000000 INFO @ Thu, 16 Apr 2020 02:21:21: 63000000 INFO @ Thu, 16 Apr 2020 02:21:22: 70000000 INFO @ Thu, 16 Apr 2020 02:21:25: 74000000 INFO @ Thu, 16 Apr 2020 02:21:27: 64000000 INFO @ Thu, 16 Apr 2020 02:21:28: 71000000 INFO @ Thu, 16 Apr 2020 02:21:31: 75000000 INFO @ Thu, 16 Apr 2020 02:21:34: 65000000 INFO @ Thu, 16 Apr 2020 02:21:34: 72000000 INFO @ Thu, 16 Apr 2020 02:21:38: 76000000 INFO @ Thu, 16 Apr 2020 02:21:40: 66000000 INFO @ Thu, 16 Apr 2020 02:21:41: 73000000 INFO @ Thu, 16 Apr 2020 02:21:44: 77000000 INFO @ Thu, 16 Apr 2020 02:21:47: 67000000 INFO @ Thu, 16 Apr 2020 02:21:47: 74000000 INFO @ Thu, 16 Apr 2020 02:21:51: 78000000 INFO @ Thu, 16 Apr 2020 02:21:53: 68000000 INFO @ Thu, 16 Apr 2020 02:21:54: 75000000 INFO @ Thu, 16 Apr 2020 02:21:57: 79000000 INFO @ Thu, 16 Apr 2020 02:22:00: 69000000 INFO @ Thu, 16 Apr 2020 02:22:00: 76000000 INFO @ Thu, 16 Apr 2020 02:22:03: 80000000 INFO @ Thu, 16 Apr 2020 02:22:06: 70000000 INFO @ Thu, 16 Apr 2020 02:22:06: 77000000 INFO @ Thu, 16 Apr 2020 02:22:10: 81000000 INFO @ Thu, 16 Apr 2020 02:22:12: 78000000 INFO @ Thu, 16 Apr 2020 02:22:13: 71000000 INFO @ Thu, 16 Apr 2020 02:22:17: 82000000 INFO @ Thu, 16 Apr 2020 02:22:19: 79000000 INFO @ Thu, 16 Apr 2020 02:22:19: 72000000 INFO @ Thu, 16 Apr 2020 02:22:24: 83000000 INFO @ Thu, 16 Apr 2020 02:22:25: 80000000 INFO @ Thu, 16 Apr 2020 02:22:26: 73000000 INFO @ Thu, 16 Apr 2020 02:22:30: 84000000 INFO @ Thu, 16 Apr 2020 02:22:32: 81000000 INFO @ Thu, 16 Apr 2020 02:22:33: 74000000 INFO @ Thu, 16 Apr 2020 02:22:37: 85000000 INFO @ Thu, 16 Apr 2020 02:22:38: 82000000 INFO @ Thu, 16 Apr 2020 02:22:39: 75000000 INFO @ Thu, 16 Apr 2020 02:22:43: 86000000 INFO @ Thu, 16 Apr 2020 02:22:45: 83000000 INFO @ Thu, 16 Apr 2020 02:22:46: 76000000 INFO @ Thu, 16 Apr 2020 02:22:50: 87000000 INFO @ Thu, 16 Apr 2020 02:22:51: 84000000 INFO @ Thu, 16 Apr 2020 02:22:52: 77000000 INFO @ Thu, 16 Apr 2020 02:22:57: 88000000 INFO @ Thu, 16 Apr 2020 02:22:57: 85000000 INFO @ Thu, 16 Apr 2020 02:22:59: 78000000 INFO @ Thu, 16 Apr 2020 02:23:03: 89000000 INFO @ Thu, 16 Apr 2020 02:23:04: 86000000 INFO @ Thu, 16 Apr 2020 02:23:06: 79000000 INFO @ Thu, 16 Apr 2020 02:23:10: 90000000 INFO @ Thu, 16 Apr 2020 02:23:10: 87000000 INFO @ Thu, 16 Apr 2020 02:23:12: 80000000 INFO @ Thu, 16 Apr 2020 02:23:16: 91000000 INFO @ Thu, 16 Apr 2020 02:23:17: 88000000 INFO @ Thu, 16 Apr 2020 02:23:19: 81000000 INFO @ Thu, 16 Apr 2020 02:23:23: 92000000 INFO @ Thu, 16 Apr 2020 02:23:23: 89000000 INFO @ Thu, 16 Apr 2020 02:23:25: 82000000 INFO @ Thu, 16 Apr 2020 02:23:30: 93000000 INFO @ Thu, 16 Apr 2020 02:23:30: 90000000 INFO @ Thu, 16 Apr 2020 02:23:32: 83000000 INFO @ Thu, 16 Apr 2020 02:23:36: 94000000 INFO @ Thu, 16 Apr 2020 02:23:36: 91000000 INFO @ Thu, 16 Apr 2020 02:23:38: 84000000 INFO @ Thu, 16 Apr 2020 02:23:43: 95000000 INFO @ Thu, 16 Apr 2020 02:23:43: 92000000 INFO @ Thu, 16 Apr 2020 02:23:45: 85000000 INFO @ Thu, 16 Apr 2020 02:23:50: 96000000 INFO @ Thu, 16 Apr 2020 02:23:50: 93000000 INFO @ Thu, 16 Apr 2020 02:23:51: 86000000 INFO @ Thu, 16 Apr 2020 02:23:56: 97000000 INFO @ Thu, 16 Apr 2020 02:23:56: 94000000 INFO @ Thu, 16 Apr 2020 02:23:58: 87000000 INFO @ Thu, 16 Apr 2020 02:24:03: 98000000 INFO @ Thu, 16 Apr 2020 02:24:03: 95000000 INFO @ Thu, 16 Apr 2020 02:24:04: 88000000 INFO @ Thu, 16 Apr 2020 02:24:10: 99000000 INFO @ Thu, 16 Apr 2020 02:24:10: 96000000 INFO @ Thu, 16 Apr 2020 02:24:10: 89000000 INFO @ Thu, 16 Apr 2020 02:24:16: 100000000 INFO @ Thu, 16 Apr 2020 02:24:16: 97000000 INFO @ Thu, 16 Apr 2020 02:24:17: 90000000 INFO @ Thu, 16 Apr 2020 02:24:21: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:24:21: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:24:21: #1 total tags in treatment: 33668858 INFO @ Thu, 16 Apr 2020 02:24:21: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:24:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:24:22: #1 tags after filtering in treatment: 23909406 INFO @ Thu, 16 Apr 2020 02:24:22: #1 Redundant rate of treatment: 0.29 INFO @ Thu, 16 Apr 2020 02:24:22: #1 finished! INFO @ Thu, 16 Apr 2020 02:24:22: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:24:22: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:24:23: 98000000 INFO @ Thu, 16 Apr 2020 02:24:23: 91000000 INFO @ Thu, 16 Apr 2020 02:24:24: #2 number of paired peaks: 887 WARNING @ Thu, 16 Apr 2020 02:24:24: Fewer paired peaks (887) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 887 pairs to build model! INFO @ Thu, 16 Apr 2020 02:24:24: start model_add_line... INFO @ Thu, 16 Apr 2020 02:24:24: start X-correlation... INFO @ Thu, 16 Apr 2020 02:24:24: end of X-cor INFO @ Thu, 16 Apr 2020 02:24:24: #2 finished! INFO @ Thu, 16 Apr 2020 02:24:24: #2 predicted fragment length is 220 bps INFO @ Thu, 16 Apr 2020 02:24:24: #2 alternative fragment length(s) may be 3,220 bps INFO @ Thu, 16 Apr 2020 02:24:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.05_model.r WARNING @ Thu, 16 Apr 2020 02:24:24: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:24:24: #2 You may need to consider one of the other alternative d(s): 3,220 WARNING @ Thu, 16 Apr 2020 02:24:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:24:24: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:24:24: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:24:29: 99000000 INFO @ Thu, 16 Apr 2020 02:24:30: 92000000 INFO @ Thu, 16 Apr 2020 02:24:36: 100000000 INFO @ Thu, 16 Apr 2020 02:24:36: 93000000 INFO @ Thu, 16 Apr 2020 02:24:41: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:24:41: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:24:41: #1 total tags in treatment: 33668858 INFO @ Thu, 16 Apr 2020 02:24:41: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:24:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:24:42: #1 tags after filtering in treatment: 23909406 INFO @ Thu, 16 Apr 2020 02:24:42: #1 Redundant rate of treatment: 0.29 INFO @ Thu, 16 Apr 2020 02:24:42: #1 finished! INFO @ Thu, 16 Apr 2020 02:24:42: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:24:42: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:24:43: 94000000 INFO @ Thu, 16 Apr 2020 02:24:43: #2 number of paired peaks: 887 WARNING @ Thu, 16 Apr 2020 02:24:43: Fewer paired peaks (887) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 887 pairs to build model! INFO @ Thu, 16 Apr 2020 02:24:43: start model_add_line... INFO @ Thu, 16 Apr 2020 02:24:44: start X-correlation... INFO @ Thu, 16 Apr 2020 02:24:44: end of X-cor INFO @ Thu, 16 Apr 2020 02:24:44: #2 finished! INFO @ Thu, 16 Apr 2020 02:24:44: #2 predicted fragment length is 220 bps INFO @ Thu, 16 Apr 2020 02:24:44: #2 alternative fragment length(s) may be 3,220 bps INFO @ Thu, 16 Apr 2020 02:24:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.10_model.r WARNING @ Thu, 16 Apr 2020 02:24:44: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:24:44: #2 You may need to consider one of the other alternative d(s): 3,220 WARNING @ Thu, 16 Apr 2020 02:24:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:24:44: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:24:44: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:24:49: 95000000 INFO @ Thu, 16 Apr 2020 02:24:56: 96000000 INFO @ Thu, 16 Apr 2020 02:25:02: 97000000 INFO @ Thu, 16 Apr 2020 02:25:08: 98000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 02:25:15: 99000000 INFO @ Thu, 16 Apr 2020 02:25:21: 100000000 INFO @ Thu, 16 Apr 2020 02:25:23: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:25:26: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 02:25:26: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 02:25:26: #1 total tags in treatment: 33668858 INFO @ Thu, 16 Apr 2020 02:25:26: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 02:25:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 02:25:27: #1 tags after filtering in treatment: 23909406 INFO @ Thu, 16 Apr 2020 02:25:27: #1 Redundant rate of treatment: 0.29 INFO @ Thu, 16 Apr 2020 02:25:27: #1 finished! INFO @ Thu, 16 Apr 2020 02:25:27: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 02:25:27: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 02:25:28: #2 number of paired peaks: 887 WARNING @ Thu, 16 Apr 2020 02:25:28: Fewer paired peaks (887) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 887 pairs to build model! INFO @ Thu, 16 Apr 2020 02:25:28: start model_add_line... INFO @ Thu, 16 Apr 2020 02:25:29: start X-correlation... INFO @ Thu, 16 Apr 2020 02:25:29: end of X-cor INFO @ Thu, 16 Apr 2020 02:25:29: #2 finished! INFO @ Thu, 16 Apr 2020 02:25:29: #2 predicted fragment length is 220 bps INFO @ Thu, 16 Apr 2020 02:25:29: #2 alternative fragment length(s) may be 3,220 bps INFO @ Thu, 16 Apr 2020 02:25:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.20_model.r WARNING @ Thu, 16 Apr 2020 02:25:29: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 02:25:29: #2 You may need to consider one of the other alternative d(s): 3,220 WARNING @ Thu, 16 Apr 2020 02:25:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 02:25:29: #3 Call peaks... INFO @ Thu, 16 Apr 2020 02:25:29: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 02:25:41: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 02:25:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.05_peaks.xls INFO @ Thu, 16 Apr 2020 02:25:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:25:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.05_summits.bed INFO @ Thu, 16 Apr 2020 02:25:45: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (13839 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 02:26:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.10_peaks.xls INFO @ Thu, 16 Apr 2020 02:26:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:26:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.10_summits.bed INFO @ Thu, 16 Apr 2020 02:26:03: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (7747 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 02:26:29: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 02:26:50: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.20_peaks.xls INFO @ Thu, 16 Apr 2020 02:26:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 02:26:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619588/SRX6619588.20_summits.bed INFO @ Thu, 16 Apr 2020 02:26:50: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3080 records, 4 fields): 4 millis CompletedMACS2peakCalling