Job ID = 5720197 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:53:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:53:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 28,963,952 reads read : 57,927,904 reads written : 57,927,904 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:11:16 28963952 reads; of these: 28963952 (100.00%) were paired; of these: 13483022 (46.55%) aligned concordantly 0 times 13036194 (45.01%) aligned concordantly exactly 1 time 2444736 (8.44%) aligned concordantly >1 times ---- 13483022 pairs aligned concordantly 0 times; of these: 8411649 (62.39%) aligned discordantly 1 time ---- 5071373 pairs aligned 0 times concordantly or discordantly; of these: 10142746 mates make up the pairs; of these: 7189249 (70.88%) aligned 0 times 1409314 (13.89%) aligned exactly 1 time 1544183 (15.22%) aligned >1 times 87.59% overall alignment rate Time searching: 01:11:16 Overall time: 01:11:16 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2776087 / 23140338 = 0.1200 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:54:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:54:49: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:54:49: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:54:57: 1000000 INFO @ Wed, 15 Apr 2020 23:55:05: 2000000 INFO @ Wed, 15 Apr 2020 23:55:13: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:55:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:55:19: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:55:19: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:55:22: 4000000 INFO @ Wed, 15 Apr 2020 23:55:28: 1000000 INFO @ Wed, 15 Apr 2020 23:55:31: 5000000 INFO @ Wed, 15 Apr 2020 23:55:37: 2000000 INFO @ Wed, 15 Apr 2020 23:55:40: 6000000 INFO @ Wed, 15 Apr 2020 23:55:46: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:55:48: 7000000 INFO @ Wed, 15 Apr 2020 23:55:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:55:49: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:55:49: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:55:55: 4000000 INFO @ Wed, 15 Apr 2020 23:55:58: 8000000 INFO @ Wed, 15 Apr 2020 23:55:59: 1000000 INFO @ Wed, 15 Apr 2020 23:56:05: 5000000 INFO @ Wed, 15 Apr 2020 23:56:09: 9000000 INFO @ Wed, 15 Apr 2020 23:56:09: 2000000 INFO @ Wed, 15 Apr 2020 23:56:16: 6000000 INFO @ Wed, 15 Apr 2020 23:56:19: 10000000 INFO @ Wed, 15 Apr 2020 23:56:19: 3000000 INFO @ Wed, 15 Apr 2020 23:56:26: 7000000 INFO @ Wed, 15 Apr 2020 23:56:30: 4000000 INFO @ Wed, 15 Apr 2020 23:56:30: 11000000 INFO @ Wed, 15 Apr 2020 23:56:37: 8000000 INFO @ Wed, 15 Apr 2020 23:56:41: 5000000 INFO @ Wed, 15 Apr 2020 23:56:41: 12000000 INFO @ Wed, 15 Apr 2020 23:56:47: 9000000 INFO @ Wed, 15 Apr 2020 23:56:51: 6000000 INFO @ Wed, 15 Apr 2020 23:56:51: 13000000 INFO @ Wed, 15 Apr 2020 23:56:57: 10000000 INFO @ Wed, 15 Apr 2020 23:57:01: 7000000 INFO @ Wed, 15 Apr 2020 23:57:01: 14000000 INFO @ Wed, 15 Apr 2020 23:57:08: 11000000 INFO @ Wed, 15 Apr 2020 23:57:11: 8000000 INFO @ Wed, 15 Apr 2020 23:57:12: 15000000 INFO @ Wed, 15 Apr 2020 23:57:18: 12000000 INFO @ Wed, 15 Apr 2020 23:57:22: 9000000 INFO @ Wed, 15 Apr 2020 23:57:22: 16000000 INFO @ Wed, 15 Apr 2020 23:57:28: 13000000 INFO @ Wed, 15 Apr 2020 23:57:32: 10000000 INFO @ Wed, 15 Apr 2020 23:57:32: 17000000 INFO @ Wed, 15 Apr 2020 23:57:39: 14000000 INFO @ Wed, 15 Apr 2020 23:57:42: 11000000 INFO @ Wed, 15 Apr 2020 23:57:42: 18000000 INFO @ Wed, 15 Apr 2020 23:57:49: 15000000 INFO @ Wed, 15 Apr 2020 23:57:52: 12000000 INFO @ Wed, 15 Apr 2020 23:57:52: 19000000 INFO @ Wed, 15 Apr 2020 23:57:59: 16000000 INFO @ Wed, 15 Apr 2020 23:58:02: 13000000 INFO @ Wed, 15 Apr 2020 23:58:02: 20000000 INFO @ Wed, 15 Apr 2020 23:58:09: 17000000 INFO @ Wed, 15 Apr 2020 23:58:12: 21000000 INFO @ Wed, 15 Apr 2020 23:58:12: 14000000 INFO @ Wed, 15 Apr 2020 23:58:19: 18000000 INFO @ Wed, 15 Apr 2020 23:58:22: 22000000 INFO @ Wed, 15 Apr 2020 23:58:22: 15000000 INFO @ Wed, 15 Apr 2020 23:58:28: 19000000 INFO @ Wed, 15 Apr 2020 23:58:32: 23000000 INFO @ Wed, 15 Apr 2020 23:58:32: 16000000 INFO @ Wed, 15 Apr 2020 23:58:38: 20000000 INFO @ Wed, 15 Apr 2020 23:58:42: 24000000 INFO @ Wed, 15 Apr 2020 23:58:43: 17000000 INFO @ Wed, 15 Apr 2020 23:58:49: 21000000 INFO @ Wed, 15 Apr 2020 23:58:52: 25000000 INFO @ Wed, 15 Apr 2020 23:58:53: 18000000 INFO @ Wed, 15 Apr 2020 23:58:59: 22000000 INFO @ Wed, 15 Apr 2020 23:59:03: 26000000 INFO @ Wed, 15 Apr 2020 23:59:03: 19000000 INFO @ Wed, 15 Apr 2020 23:59:09: 23000000 INFO @ Wed, 15 Apr 2020 23:59:13: 27000000 INFO @ Wed, 15 Apr 2020 23:59:13: 20000000 INFO @ Wed, 15 Apr 2020 23:59:19: 24000000 INFO @ Wed, 15 Apr 2020 23:59:23: 28000000 INFO @ Wed, 15 Apr 2020 23:59:23: 21000000 INFO @ Wed, 15 Apr 2020 23:59:29: 25000000 INFO @ Wed, 15 Apr 2020 23:59:32: 29000000 INFO @ Wed, 15 Apr 2020 23:59:33: 22000000 INFO @ Wed, 15 Apr 2020 23:59:39: 26000000 INFO @ Wed, 15 Apr 2020 23:59:42: 30000000 INFO @ Wed, 15 Apr 2020 23:59:43: 23000000 INFO @ Wed, 15 Apr 2020 23:59:49: 27000000 INFO @ Wed, 15 Apr 2020 23:59:52: 31000000 INFO @ Wed, 15 Apr 2020 23:59:53: 24000000 INFO @ Wed, 15 Apr 2020 23:59:59: 28000000 INFO @ Thu, 16 Apr 2020 00:00:02: 32000000 INFO @ Thu, 16 Apr 2020 00:00:03: 25000000 INFO @ Thu, 16 Apr 2020 00:00:09: 29000000 INFO @ Thu, 16 Apr 2020 00:00:11: 33000000 INFO @ Thu, 16 Apr 2020 00:00:13: 26000000 INFO @ Thu, 16 Apr 2020 00:00:18: 30000000 INFO @ Thu, 16 Apr 2020 00:00:21: 34000000 INFO @ Thu, 16 Apr 2020 00:00:23: 27000000 INFO @ Thu, 16 Apr 2020 00:00:28: 31000000 INFO @ Thu, 16 Apr 2020 00:00:31: 35000000 INFO @ Thu, 16 Apr 2020 00:00:33: 28000000 INFO @ Thu, 16 Apr 2020 00:00:38: 32000000 INFO @ Thu, 16 Apr 2020 00:00:40: 36000000 INFO @ Thu, 16 Apr 2020 00:00:43: 29000000 INFO @ Thu, 16 Apr 2020 00:00:47: 33000000 INFO @ Thu, 16 Apr 2020 00:00:50: 37000000 INFO @ Thu, 16 Apr 2020 00:00:53: 30000000 INFO @ Thu, 16 Apr 2020 00:00:57: 34000000 INFO @ Thu, 16 Apr 2020 00:01:00: 38000000 INFO @ Thu, 16 Apr 2020 00:01:04: 31000000 INFO @ Thu, 16 Apr 2020 00:01:07: 35000000 INFO @ Thu, 16 Apr 2020 00:01:10: 39000000 INFO @ Thu, 16 Apr 2020 00:01:14: 32000000 INFO @ Thu, 16 Apr 2020 00:01:17: 36000000 INFO @ Thu, 16 Apr 2020 00:01:20: 40000000 INFO @ Thu, 16 Apr 2020 00:01:23: 33000000 INFO @ Thu, 16 Apr 2020 00:01:27: 37000000 INFO @ Thu, 16 Apr 2020 00:01:29: 41000000 INFO @ Thu, 16 Apr 2020 00:01:33: 34000000 INFO @ Thu, 16 Apr 2020 00:01:36: 38000000 INFO @ Thu, 16 Apr 2020 00:01:39: 42000000 INFO @ Thu, 16 Apr 2020 00:01:43: 35000000 INFO @ Thu, 16 Apr 2020 00:01:46: 39000000 INFO @ Thu, 16 Apr 2020 00:01:48: 43000000 INFO @ Thu, 16 Apr 2020 00:01:53: 36000000 INFO @ Thu, 16 Apr 2020 00:01:55: 40000000 INFO @ Thu, 16 Apr 2020 00:01:58: 44000000 INFO @ Thu, 16 Apr 2020 00:02:03: 37000000 INFO @ Thu, 16 Apr 2020 00:02:05: 41000000 INFO @ Thu, 16 Apr 2020 00:02:08: 45000000 INFO @ Thu, 16 Apr 2020 00:02:10: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:02:10: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:02:10: #1 total tags in treatment: 13568428 INFO @ Thu, 16 Apr 2020 00:02:10: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:02:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:02:10: #1 tags after filtering in treatment: 11682814 INFO @ Thu, 16 Apr 2020 00:02:10: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:02:10: #1 finished! INFO @ Thu, 16 Apr 2020 00:02:10: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:02:10: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:02:11: #2 number of paired peaks: 269 WARNING @ Thu, 16 Apr 2020 00:02:11: Fewer paired peaks (269) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 269 pairs to build model! INFO @ Thu, 16 Apr 2020 00:02:11: start model_add_line... INFO @ Thu, 16 Apr 2020 00:02:11: start X-correlation... INFO @ Thu, 16 Apr 2020 00:02:11: end of X-cor INFO @ Thu, 16 Apr 2020 00:02:11: #2 finished! INFO @ Thu, 16 Apr 2020 00:02:11: #2 predicted fragment length is 213 bps INFO @ Thu, 16 Apr 2020 00:02:11: #2 alternative fragment length(s) may be 213 bps INFO @ Thu, 16 Apr 2020 00:02:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.05_model.r WARNING @ Thu, 16 Apr 2020 00:02:11: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:02:11: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Thu, 16 Apr 2020 00:02:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:02:11: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:02:11: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:02:12: 38000000 INFO @ Thu, 16 Apr 2020 00:02:14: 42000000 INFO @ Thu, 16 Apr 2020 00:02:21: 39000000 INFO @ Thu, 16 Apr 2020 00:02:23: 43000000 INFO @ Thu, 16 Apr 2020 00:02:30: 40000000 INFO @ Thu, 16 Apr 2020 00:02:31: 44000000 INFO @ Thu, 16 Apr 2020 00:02:33: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:02:38: 41000000 INFO @ Thu, 16 Apr 2020 00:02:40: 45000000 INFO @ Thu, 16 Apr 2020 00:02:42: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:02:42: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:02:42: #1 total tags in treatment: 13568428 INFO @ Thu, 16 Apr 2020 00:02:42: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:02:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:02:42: #1 tags after filtering in treatment: 11682814 INFO @ Thu, 16 Apr 2020 00:02:42: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:02:42: #1 finished! INFO @ Thu, 16 Apr 2020 00:02:42: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:02:42: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:02:43: #2 number of paired peaks: 269 WARNING @ Thu, 16 Apr 2020 00:02:43: Fewer paired peaks (269) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 269 pairs to build model! INFO @ Thu, 16 Apr 2020 00:02:43: start model_add_line... INFO @ Thu, 16 Apr 2020 00:02:43: start X-correlation... INFO @ Thu, 16 Apr 2020 00:02:43: end of X-cor INFO @ Thu, 16 Apr 2020 00:02:43: #2 finished! INFO @ Thu, 16 Apr 2020 00:02:43: #2 predicted fragment length is 213 bps INFO @ Thu, 16 Apr 2020 00:02:43: #2 alternative fragment length(s) may be 213 bps INFO @ Thu, 16 Apr 2020 00:02:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.10_model.r WARNING @ Thu, 16 Apr 2020 00:02:43: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:02:43: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Thu, 16 Apr 2020 00:02:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:02:43: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:02:43: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:02:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.05_peaks.xls INFO @ Thu, 16 Apr 2020 00:02:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:02:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.05_summits.bed INFO @ Thu, 16 Apr 2020 00:02:45: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (413 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:02:46: 42000000 INFO @ Thu, 16 Apr 2020 00:02:54: 43000000 INFO @ Thu, 16 Apr 2020 00:03:02: 44000000 INFO @ Thu, 16 Apr 2020 00:03:05: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:03:10: 45000000 INFO @ Thu, 16 Apr 2020 00:03:12: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:03:12: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:03:12: #1 total tags in treatment: 13568428 INFO @ Thu, 16 Apr 2020 00:03:12: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:03:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:03:12: #1 tags after filtering in treatment: 11682814 INFO @ Thu, 16 Apr 2020 00:03:12: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:03:12: #1 finished! INFO @ Thu, 16 Apr 2020 00:03:12: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:03:12: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:03:13: #2 number of paired peaks: 269 WARNING @ Thu, 16 Apr 2020 00:03:13: Fewer paired peaks (269) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 269 pairs to build model! INFO @ Thu, 16 Apr 2020 00:03:13: start model_add_line... INFO @ Thu, 16 Apr 2020 00:03:13: start X-correlation... INFO @ Thu, 16 Apr 2020 00:03:13: end of X-cor INFO @ Thu, 16 Apr 2020 00:03:13: #2 finished! INFO @ Thu, 16 Apr 2020 00:03:13: #2 predicted fragment length is 213 bps INFO @ Thu, 16 Apr 2020 00:03:13: #2 alternative fragment length(s) may be 213 bps INFO @ Thu, 16 Apr 2020 00:03:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.20_model.r WARNING @ Thu, 16 Apr 2020 00:03:13: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:03:13: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Thu, 16 Apr 2020 00:03:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:03:13: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:03:13: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:03:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:03:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:03:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.10_summits.bed INFO @ Thu, 16 Apr 2020 00:03:17: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (296 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:03:35: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:03:47: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:03:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:03:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619566/SRX6619566.20_summits.bed INFO @ Thu, 16 Apr 2020 00:03:47: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (202 records, 4 fields): 2 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。