Job ID = 5720186 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:22:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:22:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:35:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:35:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:35:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( ) 2020-04-15T12:35:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:53:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:53:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:58:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:05:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:05:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:09:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 35,032,287 reads read : 70,064,574 reads written : 70,064,574 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:12:51 35032287 reads; of these: 35032287 (100.00%) were paired; of these: 17925682 (51.17%) aligned concordantly 0 times 12435386 (35.50%) aligned concordantly exactly 1 time 4671219 (13.33%) aligned concordantly >1 times ---- 17925682 pairs aligned concordantly 0 times; of these: 7258023 (40.49%) aligned discordantly 1 time ---- 10667659 pairs aligned 0 times concordantly or discordantly; of these: 21335318 mates make up the pairs; of these: 17599410 (82.49%) aligned 0 times 1242898 (5.83%) aligned exactly 1 time 2493010 (11.68%) aligned >1 times 74.88% overall alignment rate Time searching: 01:12:51 Overall time: 01:12:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3984455 / 24015603 = 0.1659 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:06:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:06:56: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:06:56: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:07:06: 1000000 INFO @ Thu, 16 Apr 2020 00:07:17: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:07:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:07:25: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:07:25: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:07:28: 3000000 INFO @ Thu, 16 Apr 2020 00:07:35: 1000000 INFO @ Thu, 16 Apr 2020 00:07:40: 4000000 INFO @ Thu, 16 Apr 2020 00:07:46: 2000000 INFO @ Thu, 16 Apr 2020 00:07:52: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:07:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:07:55: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:07:55: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:07:57: 3000000 INFO @ Thu, 16 Apr 2020 00:08:04: 6000000 INFO @ Thu, 16 Apr 2020 00:08:06: 1000000 INFO @ Thu, 16 Apr 2020 00:08:07: 4000000 INFO @ Thu, 16 Apr 2020 00:08:16: 7000000 INFO @ Thu, 16 Apr 2020 00:08:17: 2000000 INFO @ Thu, 16 Apr 2020 00:08:18: 5000000 INFO @ Thu, 16 Apr 2020 00:08:28: 8000000 INFO @ Thu, 16 Apr 2020 00:08:28: 3000000 INFO @ Thu, 16 Apr 2020 00:08:29: 6000000 INFO @ Thu, 16 Apr 2020 00:08:39: 4000000 INFO @ Thu, 16 Apr 2020 00:08:40: 9000000 INFO @ Thu, 16 Apr 2020 00:08:40: 7000000 INFO @ Thu, 16 Apr 2020 00:08:50: 5000000 INFO @ Thu, 16 Apr 2020 00:08:51: 8000000 INFO @ Thu, 16 Apr 2020 00:08:52: 10000000 INFO @ Thu, 16 Apr 2020 00:09:00: 6000000 INFO @ Thu, 16 Apr 2020 00:09:01: 9000000 INFO @ Thu, 16 Apr 2020 00:09:04: 11000000 INFO @ Thu, 16 Apr 2020 00:09:11: 7000000 INFO @ Thu, 16 Apr 2020 00:09:12: 10000000 INFO @ Thu, 16 Apr 2020 00:09:16: 12000000 INFO @ Thu, 16 Apr 2020 00:09:22: 8000000 INFO @ Thu, 16 Apr 2020 00:09:23: 11000000 INFO @ Thu, 16 Apr 2020 00:09:28: 13000000 INFO @ Thu, 16 Apr 2020 00:09:33: 9000000 INFO @ Thu, 16 Apr 2020 00:09:34: 12000000 INFO @ Thu, 16 Apr 2020 00:09:40: 14000000 INFO @ Thu, 16 Apr 2020 00:09:43: 10000000 INFO @ Thu, 16 Apr 2020 00:09:45: 13000000 INFO @ Thu, 16 Apr 2020 00:09:51: 15000000 INFO @ Thu, 16 Apr 2020 00:09:54: 11000000 INFO @ Thu, 16 Apr 2020 00:09:56: 14000000 INFO @ Thu, 16 Apr 2020 00:10:03: 16000000 INFO @ Thu, 16 Apr 2020 00:10:05: 12000000 INFO @ Thu, 16 Apr 2020 00:10:07: 15000000 INFO @ Thu, 16 Apr 2020 00:10:15: 17000000 INFO @ Thu, 16 Apr 2020 00:10:17: 13000000 INFO @ Thu, 16 Apr 2020 00:10:18: 16000000 INFO @ Thu, 16 Apr 2020 00:10:26: 18000000 INFO @ Thu, 16 Apr 2020 00:10:28: 14000000 INFO @ Thu, 16 Apr 2020 00:10:30: 17000000 INFO @ Thu, 16 Apr 2020 00:10:38: 19000000 INFO @ Thu, 16 Apr 2020 00:10:39: 15000000 INFO @ Thu, 16 Apr 2020 00:10:41: 18000000 INFO @ Thu, 16 Apr 2020 00:10:50: 20000000 INFO @ Thu, 16 Apr 2020 00:10:50: 16000000 INFO @ Thu, 16 Apr 2020 00:10:52: 19000000 INFO @ Thu, 16 Apr 2020 00:11:02: 17000000 INFO @ Thu, 16 Apr 2020 00:11:02: 21000000 INFO @ Thu, 16 Apr 2020 00:11:03: 20000000 INFO @ Thu, 16 Apr 2020 00:11:13: 18000000 INFO @ Thu, 16 Apr 2020 00:11:14: 22000000 INFO @ Thu, 16 Apr 2020 00:11:15: 21000000 INFO @ Thu, 16 Apr 2020 00:11:24: 19000000 INFO @ Thu, 16 Apr 2020 00:11:25: 23000000 INFO @ Thu, 16 Apr 2020 00:11:26: 22000000 INFO @ Thu, 16 Apr 2020 00:11:35: 20000000 INFO @ Thu, 16 Apr 2020 00:11:37: 23000000 INFO @ Thu, 16 Apr 2020 00:11:37: 24000000 INFO @ Thu, 16 Apr 2020 00:11:46: 21000000 INFO @ Thu, 16 Apr 2020 00:11:48: 24000000 INFO @ Thu, 16 Apr 2020 00:11:49: 25000000 INFO @ Thu, 16 Apr 2020 00:11:57: 22000000 INFO @ Thu, 16 Apr 2020 00:11:59: 25000000 INFO @ Thu, 16 Apr 2020 00:12:01: 26000000 INFO @ Thu, 16 Apr 2020 00:12:08: 23000000 INFO @ Thu, 16 Apr 2020 00:12:10: 26000000 INFO @ Thu, 16 Apr 2020 00:12:13: 27000000 INFO @ Thu, 16 Apr 2020 00:12:19: 24000000 INFO @ Thu, 16 Apr 2020 00:12:21: 27000000 INFO @ Thu, 16 Apr 2020 00:12:24: 28000000 INFO @ Thu, 16 Apr 2020 00:12:30: 25000000 INFO @ Thu, 16 Apr 2020 00:12:31: 28000000 INFO @ Thu, 16 Apr 2020 00:12:36: 29000000 INFO @ Thu, 16 Apr 2020 00:12:41: 26000000 INFO @ Thu, 16 Apr 2020 00:12:42: 29000000 INFO @ Thu, 16 Apr 2020 00:12:48: 30000000 INFO @ Thu, 16 Apr 2020 00:12:51: 27000000 INFO @ Thu, 16 Apr 2020 00:12:53: 30000000 INFO @ Thu, 16 Apr 2020 00:12:59: 31000000 INFO @ Thu, 16 Apr 2020 00:13:02: 28000000 INFO @ Thu, 16 Apr 2020 00:13:04: 31000000 INFO @ Thu, 16 Apr 2020 00:13:11: 32000000 INFO @ Thu, 16 Apr 2020 00:13:13: 29000000 INFO @ Thu, 16 Apr 2020 00:13:14: 32000000 INFO @ Thu, 16 Apr 2020 00:13:23: 33000000 INFO @ Thu, 16 Apr 2020 00:13:24: 30000000 INFO @ Thu, 16 Apr 2020 00:13:25: 33000000 INFO @ Thu, 16 Apr 2020 00:13:34: 34000000 INFO @ Thu, 16 Apr 2020 00:13:34: 31000000 INFO @ Thu, 16 Apr 2020 00:13:36: 34000000 INFO @ Thu, 16 Apr 2020 00:13:45: 32000000 INFO @ Thu, 16 Apr 2020 00:13:46: 35000000 INFO @ Thu, 16 Apr 2020 00:13:47: 35000000 INFO @ Thu, 16 Apr 2020 00:13:56: 33000000 INFO @ Thu, 16 Apr 2020 00:13:57: 36000000 INFO @ Thu, 16 Apr 2020 00:13:58: 36000000 INFO @ Thu, 16 Apr 2020 00:14:06: 34000000 INFO @ Thu, 16 Apr 2020 00:14:08: 37000000 INFO @ Thu, 16 Apr 2020 00:14:09: 37000000 INFO @ Thu, 16 Apr 2020 00:14:17: 35000000 INFO @ Thu, 16 Apr 2020 00:14:21: 38000000 INFO @ Thu, 16 Apr 2020 00:14:21: 38000000 INFO @ Thu, 16 Apr 2020 00:14:27: 36000000 INFO @ Thu, 16 Apr 2020 00:14:34: 39000000 INFO @ Thu, 16 Apr 2020 00:14:34: 39000000 INFO @ Thu, 16 Apr 2020 00:14:37: 37000000 INFO @ Thu, 16 Apr 2020 00:14:44: 40000000 INFO @ Thu, 16 Apr 2020 00:14:46: 40000000 INFO @ Thu, 16 Apr 2020 00:14:48: 38000000 INFO @ Thu, 16 Apr 2020 00:14:55: 41000000 INFO @ Thu, 16 Apr 2020 00:14:58: 41000000 INFO @ Thu, 16 Apr 2020 00:14:58: 39000000 INFO @ Thu, 16 Apr 2020 00:15:05: 42000000 INFO @ Thu, 16 Apr 2020 00:15:09: 40000000 INFO @ Thu, 16 Apr 2020 00:15:10: 42000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 00:15:16: 43000000 INFO @ Thu, 16 Apr 2020 00:15:19: 41000000 INFO @ Thu, 16 Apr 2020 00:15:21: 43000000 INFO @ Thu, 16 Apr 2020 00:15:26: 44000000 INFO @ Thu, 16 Apr 2020 00:15:30: 42000000 INFO @ Thu, 16 Apr 2020 00:15:32: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:15:32: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:15:32: #1 total tags in treatment: 13965343 INFO @ Thu, 16 Apr 2020 00:15:32: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:15:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:15:32: #1 tags after filtering in treatment: 10609123 INFO @ Thu, 16 Apr 2020 00:15:32: #1 Redundant rate of treatment: 0.24 INFO @ Thu, 16 Apr 2020 00:15:32: #1 finished! INFO @ Thu, 16 Apr 2020 00:15:32: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:15:32: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:15:33: #2 number of paired peaks: 498 WARNING @ Thu, 16 Apr 2020 00:15:33: Fewer paired peaks (498) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 498 pairs to build model! INFO @ Thu, 16 Apr 2020 00:15:33: start model_add_line... INFO @ Thu, 16 Apr 2020 00:15:33: start X-correlation... INFO @ Thu, 16 Apr 2020 00:15:33: end of X-cor INFO @ Thu, 16 Apr 2020 00:15:33: #2 finished! INFO @ Thu, 16 Apr 2020 00:15:33: #2 predicted fragment length is 217 bps INFO @ Thu, 16 Apr 2020 00:15:33: #2 alternative fragment length(s) may be 217 bps INFO @ Thu, 16 Apr 2020 00:15:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.10_model.r WARNING @ Thu, 16 Apr 2020 00:15:33: #2 Since the d (217) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:15:33: #2 You may need to consider one of the other alternative d(s): 217 WARNING @ Thu, 16 Apr 2020 00:15:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:15:33: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:15:33: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:15:33: 44000000 INFO @ Thu, 16 Apr 2020 00:15:38: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:15:38: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:15:38: #1 total tags in treatment: 13965343 INFO @ Thu, 16 Apr 2020 00:15:38: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:15:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:15:39: #1 tags after filtering in treatment: 10609123 INFO @ Thu, 16 Apr 2020 00:15:39: #1 Redundant rate of treatment: 0.24 INFO @ Thu, 16 Apr 2020 00:15:39: #1 finished! INFO @ Thu, 16 Apr 2020 00:15:39: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:15:39: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:15:39: #2 number of paired peaks: 498 WARNING @ Thu, 16 Apr 2020 00:15:39: Fewer paired peaks (498) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 498 pairs to build model! INFO @ Thu, 16 Apr 2020 00:15:39: start model_add_line... INFO @ Thu, 16 Apr 2020 00:15:39: start X-correlation... INFO @ Thu, 16 Apr 2020 00:15:39: end of X-cor INFO @ Thu, 16 Apr 2020 00:15:39: #2 finished! INFO @ Thu, 16 Apr 2020 00:15:39: #2 predicted fragment length is 217 bps INFO @ Thu, 16 Apr 2020 00:15:39: #2 alternative fragment length(s) may be 217 bps INFO @ Thu, 16 Apr 2020 00:15:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.05_model.r WARNING @ Thu, 16 Apr 2020 00:15:39: #2 Since the d (217) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:15:39: #2 You may need to consider one of the other alternative d(s): 217 WARNING @ Thu, 16 Apr 2020 00:15:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:15:39: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:15:39: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:15:40: 43000000 INFO @ Thu, 16 Apr 2020 00:15:49: 44000000 INFO @ Thu, 16 Apr 2020 00:15:54: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:15:54: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:15:54: #1 total tags in treatment: 13965343 INFO @ Thu, 16 Apr 2020 00:15:54: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:15:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:15:54: #1 tags after filtering in treatment: 10609123 INFO @ Thu, 16 Apr 2020 00:15:54: #1 Redundant rate of treatment: 0.24 INFO @ Thu, 16 Apr 2020 00:15:54: #1 finished! INFO @ Thu, 16 Apr 2020 00:15:54: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:15:54: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:15:55: #2 number of paired peaks: 498 WARNING @ Thu, 16 Apr 2020 00:15:55: Fewer paired peaks (498) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 498 pairs to build model! INFO @ Thu, 16 Apr 2020 00:15:55: start model_add_line... INFO @ Thu, 16 Apr 2020 00:15:55: start X-correlation... INFO @ Thu, 16 Apr 2020 00:15:55: end of X-cor INFO @ Thu, 16 Apr 2020 00:15:55: #2 finished! INFO @ Thu, 16 Apr 2020 00:15:55: #2 predicted fragment length is 217 bps INFO @ Thu, 16 Apr 2020 00:15:55: #2 alternative fragment length(s) may be 217 bps INFO @ Thu, 16 Apr 2020 00:15:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.20_model.r WARNING @ Thu, 16 Apr 2020 00:15:55: #2 Since the d (217) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:15:55: #2 You may need to consider one of the other alternative d(s): 217 WARNING @ Thu, 16 Apr 2020 00:15:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:15:55: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:15:55: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:15:56: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:16:02: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:16:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:16:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:16:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.10_summits.bed INFO @ Thu, 16 Apr 2020 00:16:07: Done! BigWig に変換しました。 pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (594 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:16:13: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.05_peaks.xls INFO @ Thu, 16 Apr 2020 00:16:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:16:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.05_summits.bed INFO @ Thu, 16 Apr 2020 00:16:13: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1264 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:16:18: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:16:29: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:16:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:16:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619556/SRX6619556.20_summits.bed INFO @ Thu, 16 Apr 2020 00:16:29: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (317 records, 4 fields): 1 millis CompletedMACS2peakCalling