Job ID = 5720171 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:52:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:53:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:58:46 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:04:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 41,467,644 reads read : 82,935,288 reads written : 82,935,288 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:34:21 41467644 reads; of these: 41467644 (100.00%) were paired; of these: 13914319 (33.55%) aligned concordantly 0 times 20906723 (50.42%) aligned concordantly exactly 1 time 6646602 (16.03%) aligned concordantly >1 times ---- 13914319 pairs aligned concordantly 0 times; of these: 7615969 (54.73%) aligned discordantly 1 time ---- 6298350 pairs aligned 0 times concordantly or discordantly; of these: 12596700 mates make up the pairs; of these: 7564553 (60.05%) aligned 0 times 1498751 (11.90%) aligned exactly 1 time 3533396 (28.05%) aligned >1 times 90.88% overall alignment rate Time searching: 01:34:21 Overall time: 01:34:21 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 6168738 / 35003801 = 0.1762 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:25:24: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:25:24: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:25:32: 1000000 INFO @ Thu, 16 Apr 2020 00:25:39: 2000000 INFO @ Thu, 16 Apr 2020 00:25:47: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:25:54: 4000000 INFO @ Thu, 16 Apr 2020 00:25:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:25:54: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:25:54: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:26:00: 1000000 INFO @ Thu, 16 Apr 2020 00:26:01: 5000000 INFO @ Thu, 16 Apr 2020 00:26:06: 2000000 INFO @ Thu, 16 Apr 2020 00:26:09: 6000000 INFO @ Thu, 16 Apr 2020 00:26:12: 3000000 INFO @ Thu, 16 Apr 2020 00:26:16: 7000000 INFO @ Thu, 16 Apr 2020 00:26:19: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:26:23: 8000000 INFO @ Thu, 16 Apr 2020 00:26:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:26:24: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:26:24: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:26:25: 5000000 INFO @ Thu, 16 Apr 2020 00:26:30: 9000000 INFO @ Thu, 16 Apr 2020 00:26:30: 1000000 INFO @ Thu, 16 Apr 2020 00:26:31: 6000000 INFO @ Thu, 16 Apr 2020 00:26:37: 2000000 INFO @ Thu, 16 Apr 2020 00:26:37: 10000000 INFO @ Thu, 16 Apr 2020 00:26:37: 7000000 INFO @ Thu, 16 Apr 2020 00:26:43: 3000000 INFO @ Thu, 16 Apr 2020 00:26:43: 8000000 INFO @ Thu, 16 Apr 2020 00:26:44: 11000000 INFO @ Thu, 16 Apr 2020 00:26:49: 4000000 INFO @ Thu, 16 Apr 2020 00:26:49: 9000000 INFO @ Thu, 16 Apr 2020 00:26:51: 12000000 INFO @ Thu, 16 Apr 2020 00:26:55: 5000000 INFO @ Thu, 16 Apr 2020 00:26:55: 10000000 INFO @ Thu, 16 Apr 2020 00:26:58: 13000000 INFO @ Thu, 16 Apr 2020 00:27:01: 11000000 INFO @ Thu, 16 Apr 2020 00:27:01: 6000000 INFO @ Thu, 16 Apr 2020 00:27:06: 14000000 INFO @ Thu, 16 Apr 2020 00:27:07: 12000000 INFO @ Thu, 16 Apr 2020 00:27:08: 7000000 INFO @ Thu, 16 Apr 2020 00:27:13: 13000000 INFO @ Thu, 16 Apr 2020 00:27:13: 15000000 INFO @ Thu, 16 Apr 2020 00:27:14: 8000000 INFO @ Thu, 16 Apr 2020 00:27:19: 14000000 INFO @ Thu, 16 Apr 2020 00:27:20: 9000000 INFO @ Thu, 16 Apr 2020 00:27:20: 16000000 INFO @ Thu, 16 Apr 2020 00:27:25: 15000000 INFO @ Thu, 16 Apr 2020 00:27:26: 10000000 INFO @ Thu, 16 Apr 2020 00:27:27: 17000000 INFO @ Thu, 16 Apr 2020 00:27:31: 16000000 INFO @ Thu, 16 Apr 2020 00:27:32: 11000000 INFO @ Thu, 16 Apr 2020 00:27:34: 18000000 INFO @ Thu, 16 Apr 2020 00:27:37: 17000000 INFO @ Thu, 16 Apr 2020 00:27:37: 12000000 INFO @ Thu, 16 Apr 2020 00:27:41: 19000000 INFO @ Thu, 16 Apr 2020 00:27:43: 18000000 INFO @ Thu, 16 Apr 2020 00:27:43: 13000000 INFO @ Thu, 16 Apr 2020 00:27:48: 20000000 INFO @ Thu, 16 Apr 2020 00:27:49: 19000000 INFO @ Thu, 16 Apr 2020 00:27:49: 14000000 INFO @ Thu, 16 Apr 2020 00:27:55: 20000000 INFO @ Thu, 16 Apr 2020 00:27:56: 21000000 INFO @ Thu, 16 Apr 2020 00:27:56: 15000000 INFO @ Thu, 16 Apr 2020 00:28:01: 21000000 INFO @ Thu, 16 Apr 2020 00:28:02: 16000000 INFO @ Thu, 16 Apr 2020 00:28:03: 22000000 INFO @ Thu, 16 Apr 2020 00:28:06: 22000000 INFO @ Thu, 16 Apr 2020 00:28:08: 17000000 INFO @ Thu, 16 Apr 2020 00:28:09: 23000000 INFO @ Thu, 16 Apr 2020 00:28:12: 23000000 INFO @ Thu, 16 Apr 2020 00:28:14: 18000000 INFO @ Thu, 16 Apr 2020 00:28:17: 24000000 INFO @ Thu, 16 Apr 2020 00:28:18: 24000000 INFO @ Thu, 16 Apr 2020 00:28:20: 19000000 INFO @ Thu, 16 Apr 2020 00:28:24: 25000000 INFO @ Thu, 16 Apr 2020 00:28:24: 25000000 INFO @ Thu, 16 Apr 2020 00:28:26: 20000000 INFO @ Thu, 16 Apr 2020 00:28:30: 26000000 INFO @ Thu, 16 Apr 2020 00:28:31: 26000000 INFO @ Thu, 16 Apr 2020 00:28:32: 21000000 INFO @ Thu, 16 Apr 2020 00:28:37: 27000000 INFO @ Thu, 16 Apr 2020 00:28:38: 22000000 INFO @ Thu, 16 Apr 2020 00:28:38: 27000000 INFO @ Thu, 16 Apr 2020 00:28:43: 23000000 INFO @ Thu, 16 Apr 2020 00:28:45: 28000000 INFO @ Thu, 16 Apr 2020 00:28:45: 28000000 INFO @ Thu, 16 Apr 2020 00:28:49: 24000000 INFO @ Thu, 16 Apr 2020 00:28:52: 29000000 INFO @ Thu, 16 Apr 2020 00:28:52: 29000000 INFO @ Thu, 16 Apr 2020 00:28:55: 25000000 INFO @ Thu, 16 Apr 2020 00:28:59: 30000000 INFO @ Thu, 16 Apr 2020 00:28:59: 30000000 INFO @ Thu, 16 Apr 2020 00:29:01: 26000000 INFO @ Thu, 16 Apr 2020 00:29:06: 31000000 INFO @ Thu, 16 Apr 2020 00:29:06: 31000000 INFO @ Thu, 16 Apr 2020 00:29:07: 27000000 INFO @ Thu, 16 Apr 2020 00:29:13: 32000000 INFO @ Thu, 16 Apr 2020 00:29:13: 28000000 INFO @ Thu, 16 Apr 2020 00:29:13: 32000000 INFO @ Thu, 16 Apr 2020 00:29:19: 29000000 INFO @ Thu, 16 Apr 2020 00:29:20: 33000000 INFO @ Thu, 16 Apr 2020 00:29:21: 33000000 INFO @ Thu, 16 Apr 2020 00:29:25: 30000000 INFO @ Thu, 16 Apr 2020 00:29:27: 34000000 INFO @ Thu, 16 Apr 2020 00:29:28: 34000000 INFO @ Thu, 16 Apr 2020 00:29:31: 31000000 INFO @ Thu, 16 Apr 2020 00:29:34: 35000000 INFO @ Thu, 16 Apr 2020 00:29:35: 35000000 INFO @ Thu, 16 Apr 2020 00:29:37: 32000000 INFO @ Thu, 16 Apr 2020 00:29:41: 36000000 INFO @ Thu, 16 Apr 2020 00:29:42: 36000000 INFO @ Thu, 16 Apr 2020 00:29:43: 33000000 INFO @ Thu, 16 Apr 2020 00:29:49: 37000000 INFO @ Thu, 16 Apr 2020 00:29:49: 34000000 INFO @ Thu, 16 Apr 2020 00:29:49: 37000000 INFO @ Thu, 16 Apr 2020 00:29:55: 35000000 INFO @ Thu, 16 Apr 2020 00:29:56: 38000000 INFO @ Thu, 16 Apr 2020 00:29:56: 38000000 INFO @ Thu, 16 Apr 2020 00:30:01: 36000000 INFO @ Thu, 16 Apr 2020 00:30:03: 39000000 INFO @ Thu, 16 Apr 2020 00:30:03: 39000000 INFO @ Thu, 16 Apr 2020 00:30:07: 37000000 INFO @ Thu, 16 Apr 2020 00:30:10: 40000000 INFO @ Thu, 16 Apr 2020 00:30:10: 40000000 INFO @ Thu, 16 Apr 2020 00:30:13: 38000000 INFO @ Thu, 16 Apr 2020 00:30:17: 41000000 INFO @ Thu, 16 Apr 2020 00:30:17: 41000000 INFO @ Thu, 16 Apr 2020 00:30:19: 39000000 INFO @ Thu, 16 Apr 2020 00:30:24: 42000000 INFO @ Thu, 16 Apr 2020 00:30:25: 42000000 INFO @ Thu, 16 Apr 2020 00:30:25: 40000000 INFO @ Thu, 16 Apr 2020 00:30:31: 41000000 INFO @ Thu, 16 Apr 2020 00:30:32: 43000000 INFO @ Thu, 16 Apr 2020 00:30:33: 43000000 INFO @ Thu, 16 Apr 2020 00:30:38: 42000000 INFO @ Thu, 16 Apr 2020 00:30:40: 44000000 INFO @ Thu, 16 Apr 2020 00:30:40: 44000000 INFO @ Thu, 16 Apr 2020 00:30:44: 43000000 INFO @ Thu, 16 Apr 2020 00:30:47: 45000000 INFO @ Thu, 16 Apr 2020 00:30:48: 45000000 INFO @ Thu, 16 Apr 2020 00:30:50: 44000000 INFO @ Thu, 16 Apr 2020 00:30:55: 46000000 INFO @ Thu, 16 Apr 2020 00:30:55: 46000000 INFO @ Thu, 16 Apr 2020 00:30:56: 45000000 INFO @ Thu, 16 Apr 2020 00:31:02: 47000000 INFO @ Thu, 16 Apr 2020 00:31:02: 46000000 INFO @ Thu, 16 Apr 2020 00:31:03: 47000000 INFO @ Thu, 16 Apr 2020 00:31:08: 47000000 INFO @ Thu, 16 Apr 2020 00:31:09: 48000000 INFO @ Thu, 16 Apr 2020 00:31:10: 48000000 INFO @ Thu, 16 Apr 2020 00:31:14: 48000000 INFO @ Thu, 16 Apr 2020 00:31:17: 49000000 INFO @ Thu, 16 Apr 2020 00:31:17: 49000000 INFO @ Thu, 16 Apr 2020 00:31:21: 49000000 INFO @ Thu, 16 Apr 2020 00:31:24: 50000000 INFO @ Thu, 16 Apr 2020 00:31:24: 50000000 INFO @ Thu, 16 Apr 2020 00:31:27: 50000000 INFO @ Thu, 16 Apr 2020 00:31:31: 51000000 INFO @ Thu, 16 Apr 2020 00:31:31: 51000000 INFO @ Thu, 16 Apr 2020 00:31:33: 51000000 INFO @ Thu, 16 Apr 2020 00:31:38: 52000000 INFO @ Thu, 16 Apr 2020 00:31:38: 52000000 INFO @ Thu, 16 Apr 2020 00:31:40: 52000000 INFO @ Thu, 16 Apr 2020 00:31:45: 53000000 INFO @ Thu, 16 Apr 2020 00:31:46: 53000000 INFO @ Thu, 16 Apr 2020 00:31:47: 53000000 INFO @ Thu, 16 Apr 2020 00:31:53: 54000000 INFO @ Thu, 16 Apr 2020 00:31:53: 54000000 INFO @ Thu, 16 Apr 2020 00:31:54: 54000000 INFO @ Thu, 16 Apr 2020 00:32:00: 55000000 INFO @ Thu, 16 Apr 2020 00:32:01: 55000000 INFO @ Thu, 16 Apr 2020 00:32:02: 55000000 INFO @ Thu, 16 Apr 2020 00:32:08: 56000000 INFO @ Thu, 16 Apr 2020 00:32:08: 56000000 INFO @ Thu, 16 Apr 2020 00:32:09: 56000000 INFO @ Thu, 16 Apr 2020 00:32:15: 57000000 INFO @ Thu, 16 Apr 2020 00:32:16: 57000000 INFO @ Thu, 16 Apr 2020 00:32:16: 57000000 INFO @ Thu, 16 Apr 2020 00:32:22: 58000000 INFO @ Thu, 16 Apr 2020 00:32:23: 58000000 INFO @ Thu, 16 Apr 2020 00:32:24: 58000000 INFO @ Thu, 16 Apr 2020 00:32:30: 59000000 INFO @ Thu, 16 Apr 2020 00:32:30: 59000000 INFO @ Thu, 16 Apr 2020 00:32:31: 59000000 INFO @ Thu, 16 Apr 2020 00:32:37: 60000000 INFO @ Thu, 16 Apr 2020 00:32:37: 60000000 INFO @ Thu, 16 Apr 2020 00:32:38: 60000000 INFO @ Thu, 16 Apr 2020 00:32:44: 61000000 INFO @ Thu, 16 Apr 2020 00:32:45: 61000000 INFO @ Thu, 16 Apr 2020 00:32:45: 61000000 INFO @ Thu, 16 Apr 2020 00:32:51: 62000000 INFO @ Thu, 16 Apr 2020 00:32:52: 62000000 INFO @ Thu, 16 Apr 2020 00:32:53: 62000000 INFO @ Thu, 16 Apr 2020 00:32:59: 63000000 INFO @ Thu, 16 Apr 2020 00:32:59: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:32:59: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:32:59: #1 total tags in treatment: 22674946 INFO @ Thu, 16 Apr 2020 00:32:59: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:32:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:32:59: 63000000 INFO @ Thu, 16 Apr 2020 00:33:00: #1 tags after filtering in treatment: 17316823 INFO @ Thu, 16 Apr 2020 00:33:00: #1 Redundant rate of treatment: 0.24 INFO @ Thu, 16 Apr 2020 00:33:00: #1 finished! INFO @ Thu, 16 Apr 2020 00:33:00: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:33:00: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:33:00: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:33:00: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:33:00: #1 total tags in treatment: 22674946 INFO @ Thu, 16 Apr 2020 00:33:00: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:33:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:33:00: 63000000 INFO @ Thu, 16 Apr 2020 00:33:00: #1 tags after filtering in treatment: 17316823 INFO @ Thu, 16 Apr 2020 00:33:00: #1 Redundant rate of treatment: 0.24 INFO @ Thu, 16 Apr 2020 00:33:00: #1 finished! INFO @ Thu, 16 Apr 2020 00:33:00: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:33:00: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:33:00: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:33:00: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:33:00: #1 total tags in treatment: 22674946 INFO @ Thu, 16 Apr 2020 00:33:00: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:33:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:33:01: #1 tags after filtering in treatment: 17316823 INFO @ Thu, 16 Apr 2020 00:33:01: #1 Redundant rate of treatment: 0.24 INFO @ Thu, 16 Apr 2020 00:33:01: #1 finished! INFO @ Thu, 16 Apr 2020 00:33:01: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:33:01: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:33:01: #2 number of paired peaks: 2025 INFO @ Thu, 16 Apr 2020 00:33:01: start model_add_line... INFO @ Thu, 16 Apr 2020 00:33:01: start X-correlation... INFO @ Thu, 16 Apr 2020 00:33:01: end of X-cor INFO @ Thu, 16 Apr 2020 00:33:01: #2 finished! INFO @ Thu, 16 Apr 2020 00:33:01: #2 predicted fragment length is 240 bps INFO @ Thu, 16 Apr 2020 00:33:01: #2 alternative fragment length(s) may be 4,240 bps INFO @ Thu, 16 Apr 2020 00:33:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.05_model.r WARNING @ Thu, 16 Apr 2020 00:33:01: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:33:01: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Thu, 16 Apr 2020 00:33:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:33:01: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:33:01: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:33:02: #2 number of paired peaks: 2025 INFO @ Thu, 16 Apr 2020 00:33:02: start model_add_line... INFO @ Thu, 16 Apr 2020 00:33:02: start X-correlation... INFO @ Thu, 16 Apr 2020 00:33:02: end of X-cor INFO @ Thu, 16 Apr 2020 00:33:02: #2 finished! INFO @ Thu, 16 Apr 2020 00:33:02: #2 predicted fragment length is 240 bps INFO @ Thu, 16 Apr 2020 00:33:02: #2 alternative fragment length(s) may be 4,240 bps INFO @ Thu, 16 Apr 2020 00:33:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.10_model.r WARNING @ Thu, 16 Apr 2020 00:33:02: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:33:02: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Thu, 16 Apr 2020 00:33:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:33:02: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:33:02: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:33:02: #2 number of paired peaks: 2025 INFO @ Thu, 16 Apr 2020 00:33:02: start model_add_line... INFO @ Thu, 16 Apr 2020 00:33:02: start X-correlation... INFO @ Thu, 16 Apr 2020 00:33:02: end of X-cor INFO @ Thu, 16 Apr 2020 00:33:02: #2 finished! INFO @ Thu, 16 Apr 2020 00:33:02: #2 predicted fragment length is 240 bps INFO @ Thu, 16 Apr 2020 00:33:02: #2 alternative fragment length(s) may be 4,240 bps INFO @ Thu, 16 Apr 2020 00:33:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.20_model.r WARNING @ Thu, 16 Apr 2020 00:33:02: #2 Since the d (240) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:33:02: #2 You may need to consider one of the other alternative d(s): 4,240 WARNING @ Thu, 16 Apr 2020 00:33:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:33:02: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:33:02: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:33:52: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:33:52: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:33:52: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:34:09: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:34:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:34:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.20_summits.bed INFO @ Thu, 16 Apr 2020 00:34:09: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3339 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:34:09: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:34:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:34:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.10_summits.bed INFO @ Thu, 16 Apr 2020 00:34:10: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (7713 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:34:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.05_peaks.xls INFO @ Thu, 16 Apr 2020 00:34:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:34:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619542/SRX6619542.05_summits.bed INFO @ Thu, 16 Apr 2020 00:34:11: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (13194 records, 4 fields): 12 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。