Job ID = 4303038 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 47,950,615 reads read : 47,950,615 reads written : 47,950,615 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1198435.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:10:33 47950615 reads; of these: 47950615 (100.00%) were unpaired; of these: 3139810 (6.55%) aligned 0 times 37485131 (78.17%) aligned exactly 1 time 7325674 (15.28%) aligned >1 times 93.45% overall alignment rate Time searching: 00:10:33 Overall time: 00:10:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 8188554 / 44810805 = 0.1827 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Thu, 12 Dec 2019 00:58:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 12 Dec 2019 00:58:42: #1 read tag files... INFO @ Thu, 12 Dec 2019 00:58:42: #1 read treatment tags... INFO @ Thu, 12 Dec 2019 00:58:48: 1000000 INFO @ Thu, 12 Dec 2019 00:58:54: 2000000 INFO @ Thu, 12 Dec 2019 00:58:59: 3000000 INFO @ Thu, 12 Dec 2019 00:59:05: 4000000 INFO @ Thu, 12 Dec 2019 00:59:11: 5000000 INFO @ Thu, 12 Dec 2019 00:59:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 12 Dec 2019 00:59:11: #1 read tag files... INFO @ Thu, 12 Dec 2019 00:59:11: #1 read treatment tags... INFO @ Thu, 12 Dec 2019 00:59:17: 6000000 INFO @ Thu, 12 Dec 2019 00:59:17: 1000000 INFO @ Thu, 12 Dec 2019 00:59:23: 7000000 INFO @ Thu, 12 Dec 2019 00:59:24: 2000000 INFO @ Thu, 12 Dec 2019 00:59:29: 8000000 INFO @ Thu, 12 Dec 2019 00:59:30: 3000000 INFO @ Thu, 12 Dec 2019 00:59:35: 9000000 INFO @ Thu, 12 Dec 2019 00:59:36: 4000000 BedGraph に変換中... INFO @ Thu, 12 Dec 2019 00:59:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 12 Dec 2019 00:59:41: #1 read tag files... INFO @ Thu, 12 Dec 2019 00:59:41: #1 read treatment tags... INFO @ Thu, 12 Dec 2019 00:59:42: 10000000 INFO @ Thu, 12 Dec 2019 00:59:43: 5000000 INFO @ Thu, 12 Dec 2019 00:59:48: 11000000 INFO @ Thu, 12 Dec 2019 00:59:49: 6000000 INFO @ Thu, 12 Dec 2019 00:59:49: 1000000 INFO @ Thu, 12 Dec 2019 00:59:54: 12000000 INFO @ Thu, 12 Dec 2019 00:59:55: 7000000 INFO @ Thu, 12 Dec 2019 00:59:57: 2000000 INFO @ Thu, 12 Dec 2019 01:00:01: 13000000 INFO @ Thu, 12 Dec 2019 01:00:02: 8000000 INFO @ Thu, 12 Dec 2019 01:00:05: 3000000 INFO @ Thu, 12 Dec 2019 01:00:07: 14000000 INFO @ Thu, 12 Dec 2019 01:00:08: 9000000 INFO @ Thu, 12 Dec 2019 01:00:13: 15000000 INFO @ Thu, 12 Dec 2019 01:00:13: 4000000 INFO @ Thu, 12 Dec 2019 01:00:14: 10000000 INFO @ Thu, 12 Dec 2019 01:00:19: 16000000 INFO @ Thu, 12 Dec 2019 01:00:20: 11000000 INFO @ Thu, 12 Dec 2019 01:00:22: 5000000 INFO @ Thu, 12 Dec 2019 01:00:25: 17000000 INFO @ Thu, 12 Dec 2019 01:00:27: 12000000 INFO @ Thu, 12 Dec 2019 01:00:30: 6000000 INFO @ Thu, 12 Dec 2019 01:00:32: 18000000 INFO @ Thu, 12 Dec 2019 01:00:33: 13000000 INFO @ Thu, 12 Dec 2019 01:00:38: 7000000 INFO @ Thu, 12 Dec 2019 01:00:38: 19000000 INFO @ Thu, 12 Dec 2019 01:00:39: 14000000 INFO @ Thu, 12 Dec 2019 01:00:44: 20000000 INFO @ Thu, 12 Dec 2019 01:00:45: 15000000 INFO @ Thu, 12 Dec 2019 01:00:46: 8000000 INFO @ Thu, 12 Dec 2019 01:00:50: 21000000 INFO @ Thu, 12 Dec 2019 01:00:52: 16000000 INFO @ Thu, 12 Dec 2019 01:00:54: 9000000 INFO @ Thu, 12 Dec 2019 01:00:57: 22000000 INFO @ Thu, 12 Dec 2019 01:00:58: 17000000 INFO @ Thu, 12 Dec 2019 01:01:02: 10000000 INFO @ Thu, 12 Dec 2019 01:01:03: 23000000 INFO @ Thu, 12 Dec 2019 01:01:04: 18000000 INFO @ Thu, 12 Dec 2019 01:01:09: 24000000 INFO @ Thu, 12 Dec 2019 01:01:10: 11000000 INFO @ Thu, 12 Dec 2019 01:01:11: 19000000 INFO @ Thu, 12 Dec 2019 01:01:15: 25000000 INFO @ Thu, 12 Dec 2019 01:01:17: 20000000 INFO @ Thu, 12 Dec 2019 01:01:17: 12000000 INFO @ Thu, 12 Dec 2019 01:01:22: 26000000 INFO @ Thu, 12 Dec 2019 01:01:23: 21000000 INFO @ Thu, 12 Dec 2019 01:01:25: 13000000 INFO @ Thu, 12 Dec 2019 01:01:28: 27000000 INFO @ Thu, 12 Dec 2019 01:01:29: 22000000 INFO @ Thu, 12 Dec 2019 01:01:32: 14000000 INFO @ Thu, 12 Dec 2019 01:01:34: 28000000 INFO @ Thu, 12 Dec 2019 01:01:35: 23000000 INFO @ Thu, 12 Dec 2019 01:01:40: 15000000 INFO @ Thu, 12 Dec 2019 01:01:40: 29000000 INFO @ Thu, 12 Dec 2019 01:01:42: 24000000 INFO @ Thu, 12 Dec 2019 01:01:47: 30000000 INFO @ Thu, 12 Dec 2019 01:01:48: 16000000 INFO @ Thu, 12 Dec 2019 01:01:48: 25000000 INFO @ Thu, 12 Dec 2019 01:01:53: 31000000 INFO @ Thu, 12 Dec 2019 01:01:54: 26000000 INFO @ Thu, 12 Dec 2019 01:01:55: 17000000 INFO @ Thu, 12 Dec 2019 01:01:59: 32000000 INFO @ Thu, 12 Dec 2019 01:02:01: 27000000 INFO @ Thu, 12 Dec 2019 01:02:03: 18000000 INFO @ Thu, 12 Dec 2019 01:02:05: 33000000 INFO @ Thu, 12 Dec 2019 01:02:07: 28000000 INFO @ Thu, 12 Dec 2019 01:02:11: 19000000 INFO @ Thu, 12 Dec 2019 01:02:12: 34000000 INFO @ Thu, 12 Dec 2019 01:02:13: 29000000 INFO @ Thu, 12 Dec 2019 01:02:18: 35000000 INFO @ Thu, 12 Dec 2019 01:02:18: 20000000 INFO @ Thu, 12 Dec 2019 01:02:19: 30000000 INFO @ Thu, 12 Dec 2019 01:02:24: 36000000 INFO @ Thu, 12 Dec 2019 01:02:26: 31000000 INFO @ Thu, 12 Dec 2019 01:02:26: 21000000 INFO @ Thu, 12 Dec 2019 01:02:28: #1 tag size is determined as 50 bps INFO @ Thu, 12 Dec 2019 01:02:28: #1 tag size = 50 INFO @ Thu, 12 Dec 2019 01:02:28: #1 total tags in treatment: 36622251 INFO @ Thu, 12 Dec 2019 01:02:28: #1 user defined the maximum tags... INFO @ Thu, 12 Dec 2019 01:02:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 12 Dec 2019 01:02:29: #1 tags after filtering in treatment: 36622251 INFO @ Thu, 12 Dec 2019 01:02:29: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 12 Dec 2019 01:02:29: #1 finished! INFO @ Thu, 12 Dec 2019 01:02:29: #2 Build Peak Model... INFO @ Thu, 12 Dec 2019 01:02:29: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 12 Dec 2019 01:02:31: #2 number of paired peaks: 0 WARNING @ Thu, 12 Dec 2019 01:02:31: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 12 Dec 2019 01:02:31: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Thu, 12 Dec 2019 01:02:31: 32000000 INFO @ Thu, 12 Dec 2019 01:02:34: 22000000 INFO @ Thu, 12 Dec 2019 01:02:37: 33000000 INFO @ Thu, 12 Dec 2019 01:02:41: 23000000 INFO @ Thu, 12 Dec 2019 01:02:43: 34000000 INFO @ Thu, 12 Dec 2019 01:02:49: 35000000 INFO @ Thu, 12 Dec 2019 01:02:49: 24000000 INFO @ Thu, 12 Dec 2019 01:02:54: 36000000 INFO @ Thu, 12 Dec 2019 01:02:57: 25000000 INFO @ Thu, 12 Dec 2019 01:02:58: #1 tag size is determined as 50 bps INFO @ Thu, 12 Dec 2019 01:02:58: #1 tag size = 50 INFO @ Thu, 12 Dec 2019 01:02:58: #1 total tags in treatment: 36622251 INFO @ Thu, 12 Dec 2019 01:02:58: #1 user defined the maximum tags... INFO @ Thu, 12 Dec 2019 01:02:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 12 Dec 2019 01:02:59: #1 tags after filtering in treatment: 36622251 INFO @ Thu, 12 Dec 2019 01:02:59: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 12 Dec 2019 01:02:59: #1 finished! INFO @ Thu, 12 Dec 2019 01:02:59: #2 Build Peak Model... INFO @ Thu, 12 Dec 2019 01:02:59: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 12 Dec 2019 01:03:01: #2 number of paired peaks: 0 WARNING @ Thu, 12 Dec 2019 01:03:01: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 12 Dec 2019 01:03:01: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Thu, 12 Dec 2019 01:03:04: 26000000 INFO @ Thu, 12 Dec 2019 01:03:11: 27000000 INFO @ Thu, 12 Dec 2019 01:03:18: 28000000 INFO @ Thu, 12 Dec 2019 01:03:25: 29000000 INFO @ Thu, 12 Dec 2019 01:03:33: 30000000 INFO @ Thu, 12 Dec 2019 01:03:40: 31000000 INFO @ Thu, 12 Dec 2019 01:03:48: 32000000 INFO @ Thu, 12 Dec 2019 01:03:55: 33000000 INFO @ Thu, 12 Dec 2019 01:04:03: 34000000 INFO @ Thu, 12 Dec 2019 01:04:10: 35000000 INFO @ Thu, 12 Dec 2019 01:04:18: 36000000 INFO @ Thu, 12 Dec 2019 01:04:23: #1 tag size is determined as 50 bps INFO @ Thu, 12 Dec 2019 01:04:23: #1 tag size = 50 INFO @ Thu, 12 Dec 2019 01:04:23: #1 total tags in treatment: 36622251 INFO @ Thu, 12 Dec 2019 01:04:23: #1 user defined the maximum tags... INFO @ Thu, 12 Dec 2019 01:04:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 12 Dec 2019 01:04:23: #1 tags after filtering in treatment: 36622251 INFO @ Thu, 12 Dec 2019 01:04:23: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 12 Dec 2019 01:04:23: #1 finished! INFO @ Thu, 12 Dec 2019 01:04:23: #2 Build Peak Model... INFO @ Thu, 12 Dec 2019 01:04:23: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 12 Dec 2019 01:04:25: #2 number of paired peaks: 0 WARNING @ Thu, 12 Dec 2019 01:04:25: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 12 Dec 2019 01:04:25: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX494903/SRX494903.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。