Job ID = 10714520 sra ファイルのダウンロード中... Completed: 3368665K bytes transferred in 38 seconds (711426K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 49445082 spots for /home/okishinya/chipatlas/results/ce10/SRX4085434/SRR7167463.sra Written 49445082 spots for /home/okishinya/chipatlas/results/ce10/SRX4085434/SRR7167463.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:55:01 49445082 reads; of these: 49445082 (100.00%) were paired; of these: 4003762 (8.10%) aligned concordantly 0 times 38818953 (78.51%) aligned concordantly exactly 1 time 6622367 (13.39%) aligned concordantly >1 times ---- 4003762 pairs aligned concordantly 0 times; of these: 1313403 (32.80%) aligned discordantly 1 time ---- 2690359 pairs aligned 0 times concordantly or discordantly; of these: 5380718 mates make up the pairs; of these: 3499029 (65.03%) aligned 0 times 1114425 (20.71%) aligned exactly 1 time 767264 (14.26%) aligned >1 times 96.46% overall alignment rate Time searching: 00:55:01 Overall time: 00:55:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4830036 / 45745775 = 0.1056 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 03 Jun 2018 14:33:00: # Command line: callpeak -t SRX4085434.bam -f BAM -g ce -n SRX4085434.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4085434.20 # format = BAM # ChIP-seq file = ['SRX4085434.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 14:33:00: #1 read tag files... INFO @ Sun, 03 Jun 2018 14:33:00: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 14:33:00: # Command line: callpeak -t SRX4085434.bam -f BAM -g ce -n SRX4085434.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4085434.05 # format = BAM # ChIP-seq file = ['SRX4085434.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 14:33:00: #1 read tag files... INFO @ Sun, 03 Jun 2018 14:33:00: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 14:33:00: # Command line: callpeak -t SRX4085434.bam -f BAM -g ce -n SRX4085434.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4085434.10 # format = BAM # ChIP-seq file = ['SRX4085434.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 14:33:00: #1 read tag files... INFO @ Sun, 03 Jun 2018 14:33:00: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 14:33:07: 1000000 INFO @ Sun, 03 Jun 2018 14:33:08: 1000000 INFO @ Sun, 03 Jun 2018 14:33:08: 1000000 INFO @ Sun, 03 Jun 2018 14:33:14: 2000000 INFO @ Sun, 03 Jun 2018 14:33:15: 2000000 INFO @ Sun, 03 Jun 2018 14:33:15: 2000000 INFO @ Sun, 03 Jun 2018 14:33:20: 3000000 INFO @ Sun, 03 Jun 2018 14:33:21: 3000000 INFO @ Sun, 03 Jun 2018 14:33:21: 3000000 INFO @ Sun, 03 Jun 2018 14:33:26: 4000000 INFO @ Sun, 03 Jun 2018 14:33:28: 4000000 INFO @ Sun, 03 Jun 2018 14:33:28: 4000000 INFO @ Sun, 03 Jun 2018 14:33:33: 5000000 INFO @ Sun, 03 Jun 2018 14:33:35: 5000000 INFO @ Sun, 03 Jun 2018 14:33:35: 5000000 INFO @ Sun, 03 Jun 2018 14:33:39: 6000000 INFO @ Sun, 03 Jun 2018 14:33:41: 6000000 INFO @ Sun, 03 Jun 2018 14:33:41: 6000000 INFO @ Sun, 03 Jun 2018 14:33:45: 7000000 INFO @ Sun, 03 Jun 2018 14:33:48: 7000000 INFO @ Sun, 03 Jun 2018 14:33:48: 7000000 INFO @ Sun, 03 Jun 2018 14:33:51: 8000000 INFO @ Sun, 03 Jun 2018 14:33:54: 8000000 INFO @ Sun, 03 Jun 2018 14:33:54: 8000000 INFO @ Sun, 03 Jun 2018 14:33:58: 9000000 INFO @ Sun, 03 Jun 2018 14:34:01: 9000000 INFO @ Sun, 03 Jun 2018 14:34:01: 9000000 INFO @ Sun, 03 Jun 2018 14:34:04: 10000000 INFO @ Sun, 03 Jun 2018 14:34:07: 10000000 INFO @ Sun, 03 Jun 2018 14:34:07: 10000000 INFO @ Sun, 03 Jun 2018 14:34:10: 11000000 INFO @ Sun, 03 Jun 2018 14:34:14: 11000000 INFO @ Sun, 03 Jun 2018 14:34:14: 11000000 INFO @ Sun, 03 Jun 2018 14:34:16: 12000000 INFO @ Sun, 03 Jun 2018 14:34:20: 12000000 INFO @ Sun, 03 Jun 2018 14:34:20: 12000000 INFO @ Sun, 03 Jun 2018 14:34:23: 13000000 INFO @ Sun, 03 Jun 2018 14:34:27: 13000000 INFO @ Sun, 03 Jun 2018 14:34:27: 13000000 INFO @ Sun, 03 Jun 2018 14:34:29: 14000000 INFO @ Sun, 03 Jun 2018 14:34:33: 14000000 INFO @ Sun, 03 Jun 2018 14:34:33: 14000000 INFO @ Sun, 03 Jun 2018 14:34:35: 15000000 INFO @ Sun, 03 Jun 2018 14:34:40: 15000000 INFO @ Sun, 03 Jun 2018 14:34:40: 15000000 INFO @ Sun, 03 Jun 2018 14:34:41: 16000000 INFO @ Sun, 03 Jun 2018 14:34:46: 16000000 INFO @ Sun, 03 Jun 2018 14:34:46: 16000000 INFO @ Sun, 03 Jun 2018 14:34:47: 17000000 INFO @ Sun, 03 Jun 2018 14:34:53: 17000000 INFO @ Sun, 03 Jun 2018 14:34:53: 17000000 INFO @ Sun, 03 Jun 2018 14:34:54: 18000000 INFO @ Sun, 03 Jun 2018 14:34:59: 18000000 INFO @ Sun, 03 Jun 2018 14:34:59: 18000000 INFO @ Sun, 03 Jun 2018 14:35:00: 19000000 INFO @ Sun, 03 Jun 2018 14:35:06: 19000000 INFO @ Sun, 03 Jun 2018 14:35:06: 19000000 INFO @ Sun, 03 Jun 2018 14:35:06: 20000000 INFO @ Sun, 03 Jun 2018 14:35:12: 20000000 INFO @ Sun, 03 Jun 2018 14:35:12: 20000000 INFO @ Sun, 03 Jun 2018 14:35:12: 21000000 INFO @ Sun, 03 Jun 2018 14:35:18: 21000000 INFO @ Sun, 03 Jun 2018 14:35:18: 21000000 INFO @ Sun, 03 Jun 2018 14:35:19: 22000000 INFO @ Sun, 03 Jun 2018 14:35:25: 22000000 INFO @ Sun, 03 Jun 2018 14:35:25: 22000000 INFO @ Sun, 03 Jun 2018 14:35:25: 23000000 INFO @ Sun, 03 Jun 2018 14:35:32: 24000000 INFO @ Sun, 03 Jun 2018 14:35:32: 23000000 INFO @ Sun, 03 Jun 2018 14:35:32: 23000000 INFO @ Sun, 03 Jun 2018 14:35:39: 25000000 INFO @ Sun, 03 Jun 2018 14:35:39: 24000000 INFO @ Sun, 03 Jun 2018 14:35:39: 24000000 INFO @ Sun, 03 Jun 2018 14:35:45: 26000000 INFO @ Sun, 03 Jun 2018 14:35:45: 25000000 INFO @ Sun, 03 Jun 2018 14:35:45: 25000000 INFO @ Sun, 03 Jun 2018 14:35:51: 27000000 INFO @ Sun, 03 Jun 2018 14:35:52: 26000000 INFO @ Sun, 03 Jun 2018 14:35:52: 26000000 INFO @ Sun, 03 Jun 2018 14:35:57: 28000000 INFO @ Sun, 03 Jun 2018 14:35:58: 27000000 INFO @ Sun, 03 Jun 2018 14:35:58: 27000000 INFO @ Sun, 03 Jun 2018 14:36:04: 29000000 INFO @ Sun, 03 Jun 2018 14:36:05: 28000000 INFO @ Sun, 03 Jun 2018 14:36:05: 28000000 INFO @ Sun, 03 Jun 2018 14:36:10: 30000000 INFO @ Sun, 03 Jun 2018 14:36:11: 29000000 INFO @ Sun, 03 Jun 2018 14:36:11: 29000000 INFO @ Sun, 03 Jun 2018 14:36:16: 31000000 INFO @ Sun, 03 Jun 2018 14:36:18: 30000000 INFO @ Sun, 03 Jun 2018 14:36:18: 30000000 INFO @ Sun, 03 Jun 2018 14:36:22: 32000000 INFO @ Sun, 03 Jun 2018 14:36:24: 31000000 INFO @ Sun, 03 Jun 2018 14:36:24: 31000000 INFO @ Sun, 03 Jun 2018 14:36:28: 33000000 INFO @ Sun, 03 Jun 2018 14:36:31: 32000000 INFO @ Sun, 03 Jun 2018 14:36:31: 32000000 INFO @ Sun, 03 Jun 2018 14:36:35: 34000000 INFO @ Sun, 03 Jun 2018 14:36:37: 33000000 INFO @ Sun, 03 Jun 2018 14:36:37: 33000000 INFO @ Sun, 03 Jun 2018 14:36:41: 35000000 INFO @ Sun, 03 Jun 2018 14:36:44: 34000000 INFO @ Sun, 03 Jun 2018 14:36:44: 34000000 INFO @ Sun, 03 Jun 2018 14:36:47: 36000000 INFO @ Sun, 03 Jun 2018 14:36:50: 35000000 INFO @ Sun, 03 Jun 2018 14:36:50: 35000000 INFO @ Sun, 03 Jun 2018 14:36:53: 37000000 INFO @ Sun, 03 Jun 2018 14:36:57: 36000000 INFO @ Sun, 03 Jun 2018 14:36:57: 36000000 INFO @ Sun, 03 Jun 2018 14:37:00: 38000000 INFO @ Sun, 03 Jun 2018 14:37:04: 37000000 INFO @ Sun, 03 Jun 2018 14:37:04: 37000000 INFO @ Sun, 03 Jun 2018 14:37:06: 39000000 INFO @ Sun, 03 Jun 2018 14:37:10: 38000000 INFO @ Sun, 03 Jun 2018 14:37:10: 38000000 INFO @ Sun, 03 Jun 2018 14:37:13: 40000000 INFO @ Sun, 03 Jun 2018 14:37:17: 39000000 INFO @ Sun, 03 Jun 2018 14:37:17: 39000000 INFO @ Sun, 03 Jun 2018 14:37:19: 41000000 INFO @ Sun, 03 Jun 2018 14:37:24: 40000000 INFO @ Sun, 03 Jun 2018 14:37:24: 40000000 INFO @ Sun, 03 Jun 2018 14:37:26: 42000000 INFO @ Sun, 03 Jun 2018 14:37:31: 41000000 INFO @ Sun, 03 Jun 2018 14:37:31: 41000000 INFO @ Sun, 03 Jun 2018 14:37:32: 43000000 INFO @ Sun, 03 Jun 2018 14:37:37: 42000000 INFO @ Sun, 03 Jun 2018 14:37:37: 42000000 INFO @ Sun, 03 Jun 2018 14:37:38: 44000000 INFO @ Sun, 03 Jun 2018 14:37:45: 43000000 INFO @ Sun, 03 Jun 2018 14:37:45: 43000000 INFO @ Sun, 03 Jun 2018 14:37:45: 45000000 INFO @ Sun, 03 Jun 2018 14:37:51: 44000000 INFO @ Sun, 03 Jun 2018 14:37:51: 44000000 INFO @ Sun, 03 Jun 2018 14:37:51: 46000000 INFO @ Sun, 03 Jun 2018 14:37:58: 45000000 INFO @ Sun, 03 Jun 2018 14:37:58: 45000000 INFO @ Sun, 03 Jun 2018 14:37:58: 47000000 INFO @ Sun, 03 Jun 2018 14:38:05: 48000000 INFO @ Sun, 03 Jun 2018 14:38:05: 46000000 INFO @ Sun, 03 Jun 2018 14:38:05: 46000000 INFO @ Sun, 03 Jun 2018 14:38:11: 49000000 INFO @ Sun, 03 Jun 2018 14:38:11: 47000000 INFO @ Sun, 03 Jun 2018 14:38:12: 47000000 INFO @ Sun, 03 Jun 2018 14:38:17: 50000000 INFO @ Sun, 03 Jun 2018 14:38:18: 48000000 INFO @ Sun, 03 Jun 2018 14:38:18: 48000000 INFO @ Sun, 03 Jun 2018 14:38:24: 51000000 INFO @ Sun, 03 Jun 2018 14:38:25: 49000000 INFO @ Sun, 03 Jun 2018 14:38:25: 49000000 INFO @ Sun, 03 Jun 2018 14:38:31: 52000000 INFO @ Sun, 03 Jun 2018 14:38:32: 50000000 INFO @ Sun, 03 Jun 2018 14:38:32: 50000000 INFO @ Sun, 03 Jun 2018 14:38:37: 53000000 INFO @ Sun, 03 Jun 2018 14:38:38: 51000000 INFO @ Sun, 03 Jun 2018 14:38:38: 51000000 INFO @ Sun, 03 Jun 2018 14:38:44: 54000000 INFO @ Sun, 03 Jun 2018 14:38:46: 52000000 INFO @ Sun, 03 Jun 2018 14:38:46: 52000000 INFO @ Sun, 03 Jun 2018 14:38:50: 55000000 INFO @ Sun, 03 Jun 2018 14:38:52: 53000000 INFO @ Sun, 03 Jun 2018 14:38:53: 53000000 INFO @ Sun, 03 Jun 2018 14:38:56: 56000000 INFO @ Sun, 03 Jun 2018 14:38:59: 54000000 INFO @ Sun, 03 Jun 2018 14:39:01: 54000000 INFO @ Sun, 03 Jun 2018 14:39:03: 57000000 INFO @ Sun, 03 Jun 2018 14:39:06: 55000000 INFO @ Sun, 03 Jun 2018 14:39:09: 55000000 INFO @ Sun, 03 Jun 2018 14:39:09: 58000000 INFO @ Sun, 03 Jun 2018 14:39:13: 56000000 INFO @ Sun, 03 Jun 2018 14:39:16: 59000000 INFO @ Sun, 03 Jun 2018 14:39:16: 56000000 INFO @ Sun, 03 Jun 2018 14:39:20: 57000000 INFO @ Sun, 03 Jun 2018 14:39:22: 60000000 INFO @ Sun, 03 Jun 2018 14:39:24: 57000000 INFO @ Sun, 03 Jun 2018 14:39:27: 58000000 INFO @ Sun, 03 Jun 2018 14:39:29: 61000000 INFO @ Sun, 03 Jun 2018 14:39:31: 58000000 INFO @ Sun, 03 Jun 2018 14:39:34: 59000000 INFO @ Sun, 03 Jun 2018 14:39:35: 62000000 INFO @ Sun, 03 Jun 2018 14:39:38: 59000000 INFO @ Sun, 03 Jun 2018 14:39:40: 60000000 INFO @ Sun, 03 Jun 2018 14:39:41: 63000000 INFO @ Sun, 03 Jun 2018 14:39:46: 60000000 INFO @ Sun, 03 Jun 2018 14:39:47: 61000000 INFO @ Sun, 03 Jun 2018 14:39:47: 64000000 INFO @ Sun, 03 Jun 2018 14:39:53: 61000000 INFO @ Sun, 03 Jun 2018 14:39:54: 62000000 INFO @ Sun, 03 Jun 2018 14:39:54: 65000000 INFO @ Sun, 03 Jun 2018 14:40:00: 62000000 INFO @ Sun, 03 Jun 2018 14:40:00: 66000000 INFO @ Sun, 03 Jun 2018 14:40:00: 63000000 INFO @ Sun, 03 Jun 2018 14:40:06: 67000000 INFO @ Sun, 03 Jun 2018 14:40:07: 64000000 INFO @ Sun, 03 Jun 2018 14:40:07: 63000000 INFO @ Sun, 03 Jun 2018 14:40:12: 68000000 INFO @ Sun, 03 Jun 2018 14:40:14: 65000000 INFO @ Sun, 03 Jun 2018 14:40:14: 64000000 INFO @ Sun, 03 Jun 2018 14:40:19: 69000000 INFO @ Sun, 03 Jun 2018 14:40:20: 66000000 INFO @ Sun, 03 Jun 2018 14:40:22: 65000000 INFO @ Sun, 03 Jun 2018 14:40:25: 70000000 INFO @ Sun, 03 Jun 2018 14:40:27: 67000000 INFO @ Sun, 03 Jun 2018 14:40:29: 66000000 INFO @ Sun, 03 Jun 2018 14:40:31: 71000000 INFO @ Sun, 03 Jun 2018 14:40:34: 68000000 INFO @ Sun, 03 Jun 2018 14:40:36: 67000000 INFO @ Sun, 03 Jun 2018 14:40:37: 72000000 INFO @ Sun, 03 Jun 2018 14:40:40: 69000000 INFO @ Sun, 03 Jun 2018 14:40:44: 73000000 INFO @ Sun, 03 Jun 2018 14:40:44: 68000000 INFO @ Sun, 03 Jun 2018 14:40:47: 70000000 INFO @ Sun, 03 Jun 2018 14:40:50: 74000000 INFO @ Sun, 03 Jun 2018 14:40:51: 69000000 INFO @ Sun, 03 Jun 2018 14:40:53: 71000000 INFO @ Sun, 03 Jun 2018 14:40:57: 75000000 INFO @ Sun, 03 Jun 2018 14:40:58: 70000000 INFO @ Sun, 03 Jun 2018 14:40:59: 72000000 INFO @ Sun, 03 Jun 2018 14:41:04: 76000000 INFO @ Sun, 03 Jun 2018 14:41:04: 71000000 INFO @ Sun, 03 Jun 2018 14:41:05: 73000000 INFO @ Sun, 03 Jun 2018 14:41:10: 77000000 INFO @ Sun, 03 Jun 2018 14:41:11: 72000000 INFO @ Sun, 03 Jun 2018 14:41:12: 74000000 INFO @ Sun, 03 Jun 2018 14:41:17: 78000000 INFO @ Sun, 03 Jun 2018 14:41:18: 75000000 INFO @ Sun, 03 Jun 2018 14:41:18: 73000000 INFO @ Sun, 03 Jun 2018 14:41:24: 76000000 INFO @ Sun, 03 Jun 2018 14:41:24: 79000000 INFO @ Sun, 03 Jun 2018 14:41:25: 74000000 INFO @ Sun, 03 Jun 2018 14:41:30: 77000000 INFO @ Sun, 03 Jun 2018 14:41:31: 80000000 INFO @ Sun, 03 Jun 2018 14:41:31: 75000000 INFO @ Sun, 03 Jun 2018 14:41:36: 78000000 INFO @ Sun, 03 Jun 2018 14:41:38: 81000000 INFO @ Sun, 03 Jun 2018 14:41:38: 76000000 INFO @ Sun, 03 Jun 2018 14:41:42: 79000000 INFO @ Sun, 03 Jun 2018 14:41:44: 82000000 INFO @ Sun, 03 Jun 2018 14:41:45: 77000000 INFO @ Sun, 03 Jun 2018 14:41:49: 80000000 INFO @ Sun, 03 Jun 2018 14:41:51: 83000000 INFO @ Sun, 03 Jun 2018 14:41:52: 78000000 INFO @ Sun, 03 Jun 2018 14:41:55: 81000000 INFO @ Sun, 03 Jun 2018 14:41:58: 84000000 INFO @ Sun, 03 Jun 2018 14:41:59: 79000000 INFO @ Sun, 03 Jun 2018 14:42:01: 82000000 INFO @ Sun, 03 Jun 2018 14:42:05: 85000000 INFO @ Sun, 03 Jun 2018 14:42:06: 80000000 INFO @ Sun, 03 Jun 2018 14:42:07: 83000000 INFO @ Sun, 03 Jun 2018 14:42:10: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 14:42:10: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 14:42:10: #1 total tags in treatment: 40634694 INFO @ Sun, 03 Jun 2018 14:42:10: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 14:42:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 14:42:11: #1 tags after filtering in treatment: 31849793 INFO @ Sun, 03 Jun 2018 14:42:11: #1 Redundant rate of treatment: 0.22 INFO @ Sun, 03 Jun 2018 14:42:11: #1 finished! INFO @ Sun, 03 Jun 2018 14:42:11: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 14:42:11: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 14:42:12: 81000000 INFO @ Sun, 03 Jun 2018 14:42:13: 84000000 INFO @ Sun, 03 Jun 2018 14:42:14: #2 number of paired peaks: 8 WARNING @ Sun, 03 Jun 2018 14:42:14: Too few paired peaks (8) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 14:42:14: Process for pairing-model is terminated! cat: SRX4085434.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4085434.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4085434.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4085434.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 14:42:18: 82000000 INFO @ Sun, 03 Jun 2018 14:42:19: 85000000 INFO @ Sun, 03 Jun 2018 14:42:24: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 14:42:24: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 14:42:24: #1 total tags in treatment: 40634694 INFO @ Sun, 03 Jun 2018 14:42:24: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 14:42:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 14:42:24: 83000000 INFO @ Sun, 03 Jun 2018 14:42:25: #1 tags after filtering in treatment: 31849793 INFO @ Sun, 03 Jun 2018 14:42:25: #1 Redundant rate of treatment: 0.22 INFO @ Sun, 03 Jun 2018 14:42:25: #1 finished! INFO @ Sun, 03 Jun 2018 14:42:25: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 14:42:25: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 14:42:27: #2 number of paired peaks: 8 WARNING @ Sun, 03 Jun 2018 14:42:27: Too few paired peaks (8) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 14:42:27: Process for pairing-model is terminated! cat: SRX4085434.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4085434.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4085434.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4085434.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 14:42:31: 84000000 INFO @ Sun, 03 Jun 2018 14:42:37: 85000000 INFO @ Sun, 03 Jun 2018 14:42:42: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 14:42:42: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 14:42:42: #1 total tags in treatment: 40634694 INFO @ Sun, 03 Jun 2018 14:42:42: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 14:42:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 14:42:43: #1 tags after filtering in treatment: 31849793 INFO @ Sun, 03 Jun 2018 14:42:43: #1 Redundant rate of treatment: 0.22 INFO @ Sun, 03 Jun 2018 14:42:43: #1 finished! INFO @ Sun, 03 Jun 2018 14:42:43: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 14:42:43: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 14:42:45: #2 number of paired peaks: 8 WARNING @ Sun, 03 Jun 2018 14:42:45: Too few paired peaks (8) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 14:42:45: Process for pairing-model is terminated! cat: SRX4085434.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4085434.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4085434.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4085434.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。