Job ID = 12264782 SRX = SRX4082388 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 10464702 spots for SRR7164207/SRR7164207.sra Written 10464702 spots for SRR7164207/SRR7164207.sra Read 8295803 spots for SRR7164208/SRR7164208.sra Written 8295803 spots for SRR7164208/SRR7164208.sra Read 29770335 spots for SRR7164209/SRR7164209.sra Written 29770335 spots for SRR7164209/SRR7164209.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265440 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:38:36 48530840 reads; of these: 48530840 (100.00%) were paired; of these: 5414081 (11.16%) aligned concordantly 0 times 38409459 (79.14%) aligned concordantly exactly 1 time 4707300 (9.70%) aligned concordantly >1 times ---- 5414081 pairs aligned concordantly 0 times; of these: 1089497 (20.12%) aligned discordantly 1 time ---- 4324584 pairs aligned 0 times concordantly or discordantly; of these: 8649168 mates make up the pairs; of these: 6550321 (75.73%) aligned 0 times 1619035 (18.72%) aligned exactly 1 time 479812 (5.55%) aligned >1 times 93.25% overall alignment rate Time searching: 00:38:36 Overall time: 00:38:36 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 18856002 / 43091950 = 0.4376 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:58:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:58:04: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:58:04: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:58:13: 1000000 INFO @ Sat, 03 Apr 2021 06:58:20: 2000000 INFO @ Sat, 03 Apr 2021 06:58:29: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:58:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:58:35: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:58:35: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:58:37: 4000000 INFO @ Sat, 03 Apr 2021 06:58:43: 1000000 INFO @ Sat, 03 Apr 2021 06:58:46: 5000000 INFO @ Sat, 03 Apr 2021 06:58:52: 2000000 INFO @ Sat, 03 Apr 2021 06:58:54: 6000000 INFO @ Sat, 03 Apr 2021 06:59:00: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:59:02: 7000000 INFO @ Sat, 03 Apr 2021 06:59:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:59:05: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:59:05: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:59:09: 4000000 INFO @ Sat, 03 Apr 2021 06:59:11: 8000000 INFO @ Sat, 03 Apr 2021 06:59:11: 1000000 INFO @ Sat, 03 Apr 2021 06:59:17: 5000000 INFO @ Sat, 03 Apr 2021 06:59:17: 2000000 INFO @ Sat, 03 Apr 2021 06:59:19: 9000000 INFO @ Sat, 03 Apr 2021 06:59:24: 3000000 INFO @ Sat, 03 Apr 2021 06:59:26: 6000000 INFO @ Sat, 03 Apr 2021 06:59:27: 10000000 INFO @ Sat, 03 Apr 2021 06:59:30: 4000000 INFO @ Sat, 03 Apr 2021 06:59:35: 7000000 INFO @ Sat, 03 Apr 2021 06:59:35: 5000000 INFO @ Sat, 03 Apr 2021 06:59:36: 11000000 INFO @ Sat, 03 Apr 2021 06:59:41: 6000000 INFO @ Sat, 03 Apr 2021 06:59:44: 8000000 INFO @ Sat, 03 Apr 2021 06:59:44: 12000000 INFO @ Sat, 03 Apr 2021 06:59:47: 7000000 INFO @ Sat, 03 Apr 2021 06:59:52: 8000000 INFO @ Sat, 03 Apr 2021 06:59:52: 9000000 INFO @ Sat, 03 Apr 2021 06:59:52: 13000000 INFO @ Sat, 03 Apr 2021 06:59:57: 9000000 INFO @ Sat, 03 Apr 2021 07:00:00: 10000000 INFO @ Sat, 03 Apr 2021 07:00:01: 14000000 INFO @ Sat, 03 Apr 2021 07:00:03: 10000000 INFO @ Sat, 03 Apr 2021 07:00:09: 11000000 INFO @ Sat, 03 Apr 2021 07:00:10: 11000000 INFO @ Sat, 03 Apr 2021 07:00:10: 15000000 INFO @ Sat, 03 Apr 2021 07:00:14: 12000000 INFO @ Sat, 03 Apr 2021 07:00:18: 12000000 INFO @ Sat, 03 Apr 2021 07:00:18: 16000000 INFO @ Sat, 03 Apr 2021 07:00:20: 13000000 INFO @ Sat, 03 Apr 2021 07:00:26: 14000000 INFO @ Sat, 03 Apr 2021 07:00:26: 13000000 INFO @ Sat, 03 Apr 2021 07:00:27: 17000000 INFO @ Sat, 03 Apr 2021 07:00:31: 15000000 INFO @ Sat, 03 Apr 2021 07:00:35: 18000000 INFO @ Sat, 03 Apr 2021 07:00:35: 14000000 INFO @ Sat, 03 Apr 2021 07:00:37: 16000000 INFO @ Sat, 03 Apr 2021 07:00:42: 17000000 INFO @ Sat, 03 Apr 2021 07:00:43: 19000000 INFO @ Sat, 03 Apr 2021 07:00:44: 15000000 INFO @ Sat, 03 Apr 2021 07:00:48: 18000000 INFO @ Sat, 03 Apr 2021 07:00:51: 20000000 INFO @ Sat, 03 Apr 2021 07:00:52: 16000000 INFO @ Sat, 03 Apr 2021 07:00:53: 19000000 INFO @ Sat, 03 Apr 2021 07:01:00: 20000000 INFO @ Sat, 03 Apr 2021 07:01:00: 21000000 INFO @ Sat, 03 Apr 2021 07:01:00: 17000000 INFO @ Sat, 03 Apr 2021 07:01:05: 21000000 INFO @ Sat, 03 Apr 2021 07:01:07: 22000000 INFO @ Sat, 03 Apr 2021 07:01:08: 18000000 INFO @ Sat, 03 Apr 2021 07:01:11: 22000000 INFO @ Sat, 03 Apr 2021 07:01:15: 23000000 INFO @ Sat, 03 Apr 2021 07:01:16: 19000000 INFO @ Sat, 03 Apr 2021 07:01:17: 23000000 INFO @ Sat, 03 Apr 2021 07:01:23: 24000000 INFO @ Sat, 03 Apr 2021 07:01:23: 24000000 INFO @ Sat, 03 Apr 2021 07:01:24: 20000000 INFO @ Sat, 03 Apr 2021 07:01:28: 25000000 INFO @ Sat, 03 Apr 2021 07:01:31: 25000000 INFO @ Sat, 03 Apr 2021 07:01:31: 21000000 INFO @ Sat, 03 Apr 2021 07:01:34: 26000000 INFO @ Sat, 03 Apr 2021 07:01:39: 26000000 INFO @ Sat, 03 Apr 2021 07:01:39: 22000000 INFO @ Sat, 03 Apr 2021 07:01:40: 27000000 INFO @ Sat, 03 Apr 2021 07:01:46: 28000000 INFO @ Sat, 03 Apr 2021 07:01:47: 27000000 INFO @ Sat, 03 Apr 2021 07:01:47: 23000000 INFO @ Sat, 03 Apr 2021 07:01:52: 29000000 INFO @ Sat, 03 Apr 2021 07:01:55: 28000000 INFO @ Sat, 03 Apr 2021 07:01:55: 24000000 INFO @ Sat, 03 Apr 2021 07:01:58: 30000000 INFO @ Sat, 03 Apr 2021 07:02:03: 29000000 INFO @ Sat, 03 Apr 2021 07:02:03: 25000000 INFO @ Sat, 03 Apr 2021 07:02:04: 31000000 INFO @ Sat, 03 Apr 2021 07:02:10: 32000000 INFO @ Sat, 03 Apr 2021 07:02:11: 30000000 INFO @ Sat, 03 Apr 2021 07:02:11: 26000000 INFO @ Sat, 03 Apr 2021 07:02:16: 33000000 INFO @ Sat, 03 Apr 2021 07:02:18: 31000000 INFO @ Sat, 03 Apr 2021 07:02:19: 27000000 INFO @ Sat, 03 Apr 2021 07:02:22: 34000000 INFO @ Sat, 03 Apr 2021 07:02:26: 32000000 INFO @ Sat, 03 Apr 2021 07:02:27: 28000000 INFO @ Sat, 03 Apr 2021 07:02:29: 35000000 INFO @ Sat, 03 Apr 2021 07:02:34: 33000000 INFO @ Sat, 03 Apr 2021 07:02:34: 29000000 INFO @ Sat, 03 Apr 2021 07:02:36: 36000000 INFO @ Sat, 03 Apr 2021 07:02:42: 34000000 INFO @ Sat, 03 Apr 2021 07:02:42: 30000000 INFO @ Sat, 03 Apr 2021 07:02:43: 37000000 INFO @ Sat, 03 Apr 2021 07:02:49: 35000000 INFO @ Sat, 03 Apr 2021 07:02:50: 31000000 INFO @ Sat, 03 Apr 2021 07:02:50: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:02:57: 36000000 INFO @ Sat, 03 Apr 2021 07:02:57: 32000000 INFO @ Sat, 03 Apr 2021 07:02:58: 39000000 INFO @ Sat, 03 Apr 2021 07:03:04: 37000000 INFO @ Sat, 03 Apr 2021 07:03:05: 33000000 INFO @ Sat, 03 Apr 2021 07:03:05: 40000000 INFO @ Sat, 03 Apr 2021 07:03:12: 38000000 INFO @ Sat, 03 Apr 2021 07:03:12: 41000000 INFO @ Sat, 03 Apr 2021 07:03:12: 34000000 INFO @ Sat, 03 Apr 2021 07:03:19: 42000000 INFO @ Sat, 03 Apr 2021 07:03:19: 39000000 INFO @ Sat, 03 Apr 2021 07:03:20: 35000000 INFO @ Sat, 03 Apr 2021 07:03:25: 43000000 INFO @ Sat, 03 Apr 2021 07:03:26: 40000000 INFO @ Sat, 03 Apr 2021 07:03:27: 36000000 INFO @ Sat, 03 Apr 2021 07:03:32: 44000000 INFO @ Sat, 03 Apr 2021 07:03:33: 41000000 INFO @ Sat, 03 Apr 2021 07:03:34: 37000000 INFO @ Sat, 03 Apr 2021 07:03:39: 45000000 INFO @ Sat, 03 Apr 2021 07:03:41: 42000000 INFO @ Sat, 03 Apr 2021 07:03:42: 38000000 INFO @ Sat, 03 Apr 2021 07:03:45: 46000000 INFO @ Sat, 03 Apr 2021 07:03:48: 43000000 INFO @ Sat, 03 Apr 2021 07:03:49: 39000000 INFO @ Sat, 03 Apr 2021 07:03:52: 47000000 INFO @ Sat, 03 Apr 2021 07:03:55: 44000000 INFO @ Sat, 03 Apr 2021 07:03:55: 40000000 INFO @ Sat, 03 Apr 2021 07:03:58: 48000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:04:02: 45000000 INFO @ Sat, 03 Apr 2021 07:04:02: 41000000 INFO @ Sat, 03 Apr 2021 07:04:04: 49000000 INFO @ Sat, 03 Apr 2021 07:04:08: 46000000 INFO @ Sat, 03 Apr 2021 07:04:09: 42000000 INFO @ Sat, 03 Apr 2021 07:04:10: 50000000 INFO @ Sat, 03 Apr 2021 07:04:15: 47000000 INFO @ Sat, 03 Apr 2021 07:04:16: 51000000 INFO @ Sat, 03 Apr 2021 07:04:16: 43000000 INFO @ Sat, 03 Apr 2021 07:04:22: 52000000 INFO @ Sat, 03 Apr 2021 07:04:23: 48000000 INFO @ Sat, 03 Apr 2021 07:04:23: 44000000 INFO @ Sat, 03 Apr 2021 07:04:26: #1 tag size is determined as 41 bps INFO @ Sat, 03 Apr 2021 07:04:26: #1 tag size = 41 INFO @ Sat, 03 Apr 2021 07:04:26: #1 total tags in treatment: 24409875 INFO @ Sat, 03 Apr 2021 07:04:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:04:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:04:27: #1 tags after filtering in treatment: 13820359 INFO @ Sat, 03 Apr 2021 07:04:27: #1 Redundant rate of treatment: 0.43 INFO @ Sat, 03 Apr 2021 07:04:27: #1 finished! INFO @ Sat, 03 Apr 2021 07:04:27: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:04:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:04:28: #2 number of paired peaks: 552 WARNING @ Sat, 03 Apr 2021 07:04:28: Fewer paired peaks (552) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 552 pairs to build model! INFO @ Sat, 03 Apr 2021 07:04:28: start model_add_line... INFO @ Sat, 03 Apr 2021 07:04:28: start X-correlation... INFO @ Sat, 03 Apr 2021 07:04:28: end of X-cor INFO @ Sat, 03 Apr 2021 07:04:28: #2 finished! INFO @ Sat, 03 Apr 2021 07:04:28: #2 predicted fragment length is 81 bps INFO @ Sat, 03 Apr 2021 07:04:28: #2 alternative fragment length(s) may be 81 bps INFO @ Sat, 03 Apr 2021 07:04:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.20_model.r WARNING @ Sat, 03 Apr 2021 07:04:28: #2 Since the d (81) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:04:28: #2 You may need to consider one of the other alternative d(s): 81 WARNING @ Sat, 03 Apr 2021 07:04:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:04:28: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:04:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:04:30: 49000000 INFO @ Sat, 03 Apr 2021 07:04:31: 45000000 INFO @ Sat, 03 Apr 2021 07:04:37: 50000000 INFO @ Sat, 03 Apr 2021 07:04:38: 46000000 INFO @ Sat, 03 Apr 2021 07:04:44: 51000000 INFO @ Sat, 03 Apr 2021 07:04:45: 47000000 INFO @ Sat, 03 Apr 2021 07:04:51: 52000000 INFO @ Sat, 03 Apr 2021 07:04:52: 48000000 INFO @ Sat, 03 Apr 2021 07:04:54: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:04:57: #1 tag size is determined as 41 bps INFO @ Sat, 03 Apr 2021 07:04:57: #1 tag size = 41 INFO @ Sat, 03 Apr 2021 07:04:57: #1 total tags in treatment: 24409875 INFO @ Sat, 03 Apr 2021 07:04:57: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:04:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:04:57: #1 tags after filtering in treatment: 13820359 INFO @ Sat, 03 Apr 2021 07:04:57: #1 Redundant rate of treatment: 0.43 INFO @ Sat, 03 Apr 2021 07:04:57: #1 finished! INFO @ Sat, 03 Apr 2021 07:04:57: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:04:57: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:04:58: #2 number of paired peaks: 552 WARNING @ Sat, 03 Apr 2021 07:04:58: Fewer paired peaks (552) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 552 pairs to build model! INFO @ Sat, 03 Apr 2021 07:04:58: start model_add_line... INFO @ Sat, 03 Apr 2021 07:04:58: start X-correlation... INFO @ Sat, 03 Apr 2021 07:04:58: end of X-cor INFO @ Sat, 03 Apr 2021 07:04:58: #2 finished! INFO @ Sat, 03 Apr 2021 07:04:58: #2 predicted fragment length is 81 bps INFO @ Sat, 03 Apr 2021 07:04:58: #2 alternative fragment length(s) may be 81 bps INFO @ Sat, 03 Apr 2021 07:04:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.05_model.r WARNING @ Sat, 03 Apr 2021 07:04:58: #2 Since the d (81) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:04:58: #2 You may need to consider one of the other alternative d(s): 81 WARNING @ Sat, 03 Apr 2021 07:04:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:04:58: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:04:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:04:59: 49000000 INFO @ Sat, 03 Apr 2021 07:05:06: 50000000 INFO @ Sat, 03 Apr 2021 07:05:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:05:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:05:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.20_summits.bed INFO @ Sat, 03 Apr 2021 07:05:08: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3532 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:05:13: 51000000 INFO @ Sat, 03 Apr 2021 07:05:20: 52000000 INFO @ Sat, 03 Apr 2021 07:05:25: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:05:26: #1 tag size is determined as 41 bps INFO @ Sat, 03 Apr 2021 07:05:26: #1 tag size = 41 INFO @ Sat, 03 Apr 2021 07:05:26: #1 total tags in treatment: 24409875 INFO @ Sat, 03 Apr 2021 07:05:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:05:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:05:26: #1 tags after filtering in treatment: 13820359 INFO @ Sat, 03 Apr 2021 07:05:26: #1 Redundant rate of treatment: 0.43 INFO @ Sat, 03 Apr 2021 07:05:26: #1 finished! INFO @ Sat, 03 Apr 2021 07:05:26: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:05:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:05:27: #2 number of paired peaks: 552 WARNING @ Sat, 03 Apr 2021 07:05:27: Fewer paired peaks (552) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 552 pairs to build model! INFO @ Sat, 03 Apr 2021 07:05:27: start model_add_line... INFO @ Sat, 03 Apr 2021 07:05:27: start X-correlation... INFO @ Sat, 03 Apr 2021 07:05:27: end of X-cor INFO @ Sat, 03 Apr 2021 07:05:27: #2 finished! INFO @ Sat, 03 Apr 2021 07:05:27: #2 predicted fragment length is 81 bps INFO @ Sat, 03 Apr 2021 07:05:27: #2 alternative fragment length(s) may be 81 bps INFO @ Sat, 03 Apr 2021 07:05:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.10_model.r WARNING @ Sat, 03 Apr 2021 07:05:27: #2 Since the d (81) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:05:27: #2 You may need to consider one of the other alternative d(s): 81 WARNING @ Sat, 03 Apr 2021 07:05:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:05:27: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:05:27: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:05:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:05:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:05:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.05_summits.bed INFO @ Sat, 03 Apr 2021 07:05:39: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (12253 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:05:54: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:06:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:06:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:06:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082388/SRX4082388.10_summits.bed INFO @ Sat, 03 Apr 2021 07:06:08: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (7566 records, 4 fields): 11 millis CompletedMACS2peakCalling