Job ID = 1292371 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 46,643,726 reads read : 93,287,452 reads written : 93,287,452 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:01:05 46643726 reads; of these: 46643726 (100.00%) were paired; of these: 2889770 (6.20%) aligned concordantly 0 times 41220794 (88.37%) aligned concordantly exactly 1 time 2533162 (5.43%) aligned concordantly >1 times ---- 2889770 pairs aligned concordantly 0 times; of these: 1463846 (50.66%) aligned discordantly 1 time ---- 1425924 pairs aligned 0 times concordantly or discordantly; of these: 2851848 mates make up the pairs; of these: 1564512 (54.86%) aligned 0 times 936134 (32.83%) aligned exactly 1 time 351202 (12.31%) aligned >1 times 98.32% overall alignment rate Time searching: 01:01:05 Overall time: 01:01:05 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 13442447 / 44841444 = 0.2998 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 20:26:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:26:27: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:26:27: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:26:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:26:27: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:26:27: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:26:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:26:27: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:26:27: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:26:37: 1000000 INFO @ Sun, 02 Jun 2019 20:26:39: 1000000 INFO @ Sun, 02 Jun 2019 20:26:39: 1000000 INFO @ Sun, 02 Jun 2019 20:26:45: 2000000 INFO @ Sun, 02 Jun 2019 20:26:50: 2000000 INFO @ Sun, 02 Jun 2019 20:26:50: 2000000 INFO @ Sun, 02 Jun 2019 20:26:54: 3000000 INFO @ Sun, 02 Jun 2019 20:27:01: 3000000 INFO @ Sun, 02 Jun 2019 20:27:01: 3000000 INFO @ Sun, 02 Jun 2019 20:27:02: 4000000 INFO @ Sun, 02 Jun 2019 20:27:10: 5000000 INFO @ Sun, 02 Jun 2019 20:27:12: 4000000 INFO @ Sun, 02 Jun 2019 20:27:12: 4000000 INFO @ Sun, 02 Jun 2019 20:27:19: 6000000 INFO @ Sun, 02 Jun 2019 20:27:23: 5000000 INFO @ Sun, 02 Jun 2019 20:27:23: 5000000 INFO @ Sun, 02 Jun 2019 20:27:27: 7000000 INFO @ Sun, 02 Jun 2019 20:27:34: 6000000 INFO @ Sun, 02 Jun 2019 20:27:34: 6000000 INFO @ Sun, 02 Jun 2019 20:27:36: 8000000 INFO @ Sun, 02 Jun 2019 20:27:44: 9000000 INFO @ Sun, 02 Jun 2019 20:27:45: 7000000 INFO @ Sun, 02 Jun 2019 20:27:45: 7000000 INFO @ Sun, 02 Jun 2019 20:27:52: 10000000 INFO @ Sun, 02 Jun 2019 20:27:55: 8000000 INFO @ Sun, 02 Jun 2019 20:27:55: 8000000 INFO @ Sun, 02 Jun 2019 20:28:01: 11000000 INFO @ Sun, 02 Jun 2019 20:28:06: 9000000 INFO @ Sun, 02 Jun 2019 20:28:06: 9000000 INFO @ Sun, 02 Jun 2019 20:28:09: 12000000 INFO @ Sun, 02 Jun 2019 20:28:17: 13000000 INFO @ Sun, 02 Jun 2019 20:28:17: 10000000 INFO @ Sun, 02 Jun 2019 20:28:17: 10000000 INFO @ Sun, 02 Jun 2019 20:28:24: 14000000 INFO @ Sun, 02 Jun 2019 20:28:28: 11000000 INFO @ Sun, 02 Jun 2019 20:28:28: 11000000 INFO @ Sun, 02 Jun 2019 20:28:32: 15000000 INFO @ Sun, 02 Jun 2019 20:28:38: 12000000 INFO @ Sun, 02 Jun 2019 20:28:38: 12000000 INFO @ Sun, 02 Jun 2019 20:28:40: 16000000 INFO @ Sun, 02 Jun 2019 20:28:48: 17000000 INFO @ Sun, 02 Jun 2019 20:28:48: 13000000 INFO @ Sun, 02 Jun 2019 20:28:48: 13000000 INFO @ Sun, 02 Jun 2019 20:28:56: 18000000 INFO @ Sun, 02 Jun 2019 20:28:58: 14000000 INFO @ Sun, 02 Jun 2019 20:28:58: 14000000 INFO @ Sun, 02 Jun 2019 20:29:03: 19000000 INFO @ Sun, 02 Jun 2019 20:29:07: 15000000 INFO @ Sun, 02 Jun 2019 20:29:07: 15000000 INFO @ Sun, 02 Jun 2019 20:29:11: 20000000 INFO @ Sun, 02 Jun 2019 20:29:17: 16000000 INFO @ Sun, 02 Jun 2019 20:29:17: 16000000 INFO @ Sun, 02 Jun 2019 20:29:19: 21000000 INFO @ Sun, 02 Jun 2019 20:29:26: 17000000 INFO @ Sun, 02 Jun 2019 20:29:27: 17000000 INFO @ Sun, 02 Jun 2019 20:29:27: 22000000 INFO @ Sun, 02 Jun 2019 20:29:35: 18000000 INFO @ Sun, 02 Jun 2019 20:29:36: 18000000 INFO @ Sun, 02 Jun 2019 20:29:36: 23000000 INFO @ Sun, 02 Jun 2019 20:29:44: 19000000 INFO @ Sun, 02 Jun 2019 20:29:44: 24000000 INFO @ Sun, 02 Jun 2019 20:29:45: 19000000 INFO @ Sun, 02 Jun 2019 20:29:52: 25000000 INFO @ Sun, 02 Jun 2019 20:29:53: 20000000 INFO @ Sun, 02 Jun 2019 20:29:55: 20000000 INFO @ Sun, 02 Jun 2019 20:30:00: 26000000 INFO @ Sun, 02 Jun 2019 20:30:02: 21000000 INFO @ Sun, 02 Jun 2019 20:30:04: 21000000 INFO @ Sun, 02 Jun 2019 20:30:08: 27000000 INFO @ Sun, 02 Jun 2019 20:30:11: 22000000 INFO @ Sun, 02 Jun 2019 20:30:13: 22000000 INFO @ Sun, 02 Jun 2019 20:30:16: 28000000 INFO @ Sun, 02 Jun 2019 20:30:21: 23000000 INFO @ Sun, 02 Jun 2019 20:30:24: 23000000 INFO @ Sun, 02 Jun 2019 20:30:25: 29000000 INFO @ Sun, 02 Jun 2019 20:30:30: 24000000 INFO @ Sun, 02 Jun 2019 20:30:32: 30000000 INFO @ Sun, 02 Jun 2019 20:30:33: 24000000 INFO @ Sun, 02 Jun 2019 20:30:39: 25000000 INFO @ Sun, 02 Jun 2019 20:30:41: 31000000 INFO @ Sun, 02 Jun 2019 20:30:42: 25000000 INFO @ Sun, 02 Jun 2019 20:30:48: 26000000 INFO @ Sun, 02 Jun 2019 20:30:49: 32000000 INFO @ Sun, 02 Jun 2019 20:30:51: 26000000 INFO @ Sun, 02 Jun 2019 20:30:57: 27000000 INFO @ Sun, 02 Jun 2019 20:30:57: 33000000 INFO @ Sun, 02 Jun 2019 20:31:01: 27000000 INFO @ Sun, 02 Jun 2019 20:31:06: 34000000 INFO @ Sun, 02 Jun 2019 20:31:06: 28000000 INFO @ Sun, 02 Jun 2019 20:31:11: 28000000 INFO @ Sun, 02 Jun 2019 20:31:14: 35000000 INFO @ Sun, 02 Jun 2019 20:31:15: 29000000 INFO @ Sun, 02 Jun 2019 20:31:20: 29000000 INFO @ Sun, 02 Jun 2019 20:31:22: 36000000 INFO @ Sun, 02 Jun 2019 20:31:24: 30000000 INFO @ Sun, 02 Jun 2019 20:31:29: 30000000 INFO @ Sun, 02 Jun 2019 20:31:30: 37000000 INFO @ Sun, 02 Jun 2019 20:31:32: 31000000 INFO @ Sun, 02 Jun 2019 20:31:38: 31000000 INFO @ Sun, 02 Jun 2019 20:31:38: 38000000 INFO @ Sun, 02 Jun 2019 20:31:41: 32000000 INFO @ Sun, 02 Jun 2019 20:31:46: 39000000 INFO @ Sun, 02 Jun 2019 20:31:47: 32000000 INFO @ Sun, 02 Jun 2019 20:31:50: 33000000 INFO @ Sun, 02 Jun 2019 20:31:54: 40000000 INFO @ Sun, 02 Jun 2019 20:31:56: 33000000 INFO @ Sun, 02 Jun 2019 20:31:59: 34000000 INFO @ Sun, 02 Jun 2019 20:32:02: 41000000 INFO @ Sun, 02 Jun 2019 20:32:06: 34000000 INFO @ Sun, 02 Jun 2019 20:32:09: 35000000 INFO @ Sun, 02 Jun 2019 20:32:10: 42000000 INFO @ Sun, 02 Jun 2019 20:32:15: 35000000 INFO @ Sun, 02 Jun 2019 20:32:18: 36000000 INFO @ Sun, 02 Jun 2019 20:32:18: 43000000 INFO @ Sun, 02 Jun 2019 20:32:24: 36000000 INFO @ Sun, 02 Jun 2019 20:32:26: 44000000 INFO @ Sun, 02 Jun 2019 20:32:27: 37000000 INFO @ Sun, 02 Jun 2019 20:32:34: 37000000 INFO @ Sun, 02 Jun 2019 20:32:34: 45000000 INFO @ Sun, 02 Jun 2019 20:32:36: 38000000 INFO @ Sun, 02 Jun 2019 20:32:43: 46000000 INFO @ Sun, 02 Jun 2019 20:32:44: 38000000 INFO @ Sun, 02 Jun 2019 20:32:46: 39000000 INFO @ Sun, 02 Jun 2019 20:32:51: 47000000 INFO @ Sun, 02 Jun 2019 20:32:53: 39000000 INFO @ Sun, 02 Jun 2019 20:32:55: 40000000 INFO @ Sun, 02 Jun 2019 20:32:59: 48000000 INFO @ Sun, 02 Jun 2019 20:33:03: 40000000 INFO @ Sun, 02 Jun 2019 20:33:04: 41000000 INFO @ Sun, 02 Jun 2019 20:33:07: 49000000 INFO @ Sun, 02 Jun 2019 20:33:13: 41000000 INFO @ Sun, 02 Jun 2019 20:33:14: 42000000 INFO @ Sun, 02 Jun 2019 20:33:15: 50000000 INFO @ Sun, 02 Jun 2019 20:33:23: 43000000 INFO @ Sun, 02 Jun 2019 20:33:23: 42000000 INFO @ Sun, 02 Jun 2019 20:33:23: 51000000 INFO @ Sun, 02 Jun 2019 20:33:31: 52000000 INFO @ Sun, 02 Jun 2019 20:33:32: 44000000 INFO @ Sun, 02 Jun 2019 20:33:32: 43000000 INFO @ Sun, 02 Jun 2019 20:33:39: 53000000 INFO @ Sun, 02 Jun 2019 20:33:41: 45000000 INFO @ Sun, 02 Jun 2019 20:33:42: 44000000 INFO @ Sun, 02 Jun 2019 20:33:47: 54000000 INFO @ Sun, 02 Jun 2019 20:33:51: 46000000 INFO @ Sun, 02 Jun 2019 20:33:51: 45000000 INFO @ Sun, 02 Jun 2019 20:33:55: 55000000 INFO @ Sun, 02 Jun 2019 20:34:00: 47000000 INFO @ Sun, 02 Jun 2019 20:34:01: 46000000 INFO @ Sun, 02 Jun 2019 20:34:04: 56000000 INFO @ Sun, 02 Jun 2019 20:34:10: 48000000 INFO @ Sun, 02 Jun 2019 20:34:11: 47000000 INFO @ Sun, 02 Jun 2019 20:34:12: 57000000 INFO @ Sun, 02 Jun 2019 20:34:19: 49000000 INFO @ Sun, 02 Jun 2019 20:34:20: 58000000 INFO @ Sun, 02 Jun 2019 20:34:20: 48000000 INFO @ Sun, 02 Jun 2019 20:34:28: 50000000 INFO @ Sun, 02 Jun 2019 20:34:29: 59000000 INFO @ Sun, 02 Jun 2019 20:34:30: 49000000 INFO @ Sun, 02 Jun 2019 20:34:37: 51000000 INFO @ Sun, 02 Jun 2019 20:34:37: 60000000 INFO @ Sun, 02 Jun 2019 20:34:39: 50000000 INFO @ Sun, 02 Jun 2019 20:34:45: 61000000 INFO @ Sun, 02 Jun 2019 20:34:46: 52000000 INFO @ Sun, 02 Jun 2019 20:34:48: 51000000 INFO @ Sun, 02 Jun 2019 20:34:54: 62000000 INFO @ Sun, 02 Jun 2019 20:34:55: 53000000 INFO @ Sun, 02 Jun 2019 20:34:58: 52000000 INFO @ Sun, 02 Jun 2019 20:35:02: 63000000 INFO @ Sun, 02 Jun 2019 20:35:04: 54000000 INFO @ Sun, 02 Jun 2019 20:35:07: 53000000 INFO @ Sun, 02 Jun 2019 20:35:11: 64000000 INFO @ Sun, 02 Jun 2019 20:35:13: 55000000 INFO @ Sun, 02 Jun 2019 20:35:16: 54000000 INFO @ Sun, 02 Jun 2019 20:35:19: #1 tag size is determined as 76 bps INFO @ Sun, 02 Jun 2019 20:35:19: #1 tag size = 76 INFO @ Sun, 02 Jun 2019 20:35:19: #1 total tags in treatment: 30469669 INFO @ Sun, 02 Jun 2019 20:35:19: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:35:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:35:20: #1 tags after filtering in treatment: 23890490 INFO @ Sun, 02 Jun 2019 20:35:20: #1 Redundant rate of treatment: 0.22 INFO @ Sun, 02 Jun 2019 20:35:20: #1 finished! INFO @ Sun, 02 Jun 2019 20:35:20: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:35:20: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:35:22: #2 number of paired peaks: 221 WARNING @ Sun, 02 Jun 2019 20:35:22: Fewer paired peaks (221) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 221 pairs to build model! INFO @ Sun, 02 Jun 2019 20:35:22: start model_add_line... INFO @ Sun, 02 Jun 2019 20:35:22: start X-correlation... INFO @ Sun, 02 Jun 2019 20:35:22: end of X-cor INFO @ Sun, 02 Jun 2019 20:35:22: #2 finished! INFO @ Sun, 02 Jun 2019 20:35:22: #2 predicted fragment length is 204 bps INFO @ Sun, 02 Jun 2019 20:35:22: #2 alternative fragment length(s) may be 4,178,204,221 bps INFO @ Sun, 02 Jun 2019 20:35:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.05_model.r INFO @ Sun, 02 Jun 2019 20:35:22: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:35:22: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:35:22: 56000000 INFO @ Sun, 02 Jun 2019 20:35:26: 55000000 INFO @ Sun, 02 Jun 2019 20:35:31: 57000000 INFO @ Sun, 02 Jun 2019 20:35:35: 56000000 INFO @ Sun, 02 Jun 2019 20:35:41: 58000000 INFO @ Sun, 02 Jun 2019 20:35:44: 57000000 INFO @ Sun, 02 Jun 2019 20:35:51: 59000000 INFO @ Sun, 02 Jun 2019 20:35:54: 58000000 INFO @ Sun, 02 Jun 2019 20:36:00: 60000000 INFO @ Sun, 02 Jun 2019 20:36:04: 59000000 INFO @ Sun, 02 Jun 2019 20:36:09: 61000000 INFO @ Sun, 02 Jun 2019 20:36:14: 60000000 INFO @ Sun, 02 Jun 2019 20:36:19: 62000000 INFO @ Sun, 02 Jun 2019 20:36:23: 61000000 INFO @ Sun, 02 Jun 2019 20:36:28: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:36:28: 63000000 INFO @ Sun, 02 Jun 2019 20:36:33: 62000000 INFO @ Sun, 02 Jun 2019 20:36:38: 64000000 INFO @ Sun, 02 Jun 2019 20:36:44: 63000000 INFO @ Sun, 02 Jun 2019 20:36:47: #1 tag size is determined as 76 bps INFO @ Sun, 02 Jun 2019 20:36:47: #1 tag size = 76 INFO @ Sun, 02 Jun 2019 20:36:47: #1 total tags in treatment: 30469669 INFO @ Sun, 02 Jun 2019 20:36:47: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:36:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:36:48: #1 tags after filtering in treatment: 23890490 INFO @ Sun, 02 Jun 2019 20:36:48: #1 Redundant rate of treatment: 0.22 INFO @ Sun, 02 Jun 2019 20:36:48: #1 finished! INFO @ Sun, 02 Jun 2019 20:36:48: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:36:48: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:36:50: #2 number of paired peaks: 221 WARNING @ Sun, 02 Jun 2019 20:36:50: Fewer paired peaks (221) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 221 pairs to build model! INFO @ Sun, 02 Jun 2019 20:36:50: start model_add_line... INFO @ Sun, 02 Jun 2019 20:36:50: start X-correlation... INFO @ Sun, 02 Jun 2019 20:36:50: end of X-cor INFO @ Sun, 02 Jun 2019 20:36:50: #2 finished! INFO @ Sun, 02 Jun 2019 20:36:50: #2 predicted fragment length is 204 bps INFO @ Sun, 02 Jun 2019 20:36:50: #2 alternative fragment length(s) may be 4,178,204,221 bps INFO @ Sun, 02 Jun 2019 20:36:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.20_model.r INFO @ Sun, 02 Jun 2019 20:36:50: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:36:50: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:36:54: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.05_peaks.xls INFO @ Sun, 02 Jun 2019 20:36:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:36:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.05_summits.bed INFO @ Sun, 02 Jun 2019 20:36:54: Done! INFO @ Sun, 02 Jun 2019 20:36:54: 64000000 pass1 - making usageList (7 chroms): 4 millis pass2 - checking and writing primary data (5657 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:37:02: #1 tag size is determined as 76 bps INFO @ Sun, 02 Jun 2019 20:37:02: #1 tag size = 76 INFO @ Sun, 02 Jun 2019 20:37:02: #1 total tags in treatment: 30469669 INFO @ Sun, 02 Jun 2019 20:37:02: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:37:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:37:03: #1 tags after filtering in treatment: 23890490 INFO @ Sun, 02 Jun 2019 20:37:03: #1 Redundant rate of treatment: 0.22 INFO @ Sun, 02 Jun 2019 20:37:03: #1 finished! INFO @ Sun, 02 Jun 2019 20:37:03: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:37:03: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:37:05: #2 number of paired peaks: 221 WARNING @ Sun, 02 Jun 2019 20:37:05: Fewer paired peaks (221) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 221 pairs to build model! INFO @ Sun, 02 Jun 2019 20:37:05: start model_add_line... INFO @ Sun, 02 Jun 2019 20:37:05: start X-correlation... INFO @ Sun, 02 Jun 2019 20:37:05: end of X-cor INFO @ Sun, 02 Jun 2019 20:37:05: #2 finished! INFO @ Sun, 02 Jun 2019 20:37:05: #2 predicted fragment length is 204 bps INFO @ Sun, 02 Jun 2019 20:37:05: #2 alternative fragment length(s) may be 4,178,204,221 bps INFO @ Sun, 02 Jun 2019 20:37:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.10_model.r INFO @ Sun, 02 Jun 2019 20:37:05: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:37:05: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:37:56: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:38:11: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:38:21: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.20_peaks.xls INFO @ Sun, 02 Jun 2019 20:38:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:38:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.20_summits.bed INFO @ Sun, 02 Jun 2019 20:38:21: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1283 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:38:36: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.10_peaks.xls INFO @ Sun, 02 Jun 2019 20:38:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:38:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3733158/SRX3733158.10_summits.bed INFO @ Sun, 02 Jun 2019 20:38:36: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (3068 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。