Job ID = 12264770 SRX = SRX3029135 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 41375988 spots for SRR5860435/SRR5860435.sra Written 41375988 spots for SRR5860435/SRR5860435.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265468 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:45:01 41375988 reads; of these: 41375988 (100.00%) were paired; of these: 14945376 (36.12%) aligned concordantly 0 times 23016662 (55.63%) aligned concordantly exactly 1 time 3413950 (8.25%) aligned concordantly >1 times ---- 14945376 pairs aligned concordantly 0 times; of these: 4515297 (30.21%) aligned discordantly 1 time ---- 10430079 pairs aligned 0 times concordantly or discordantly; of these: 20860158 mates make up the pairs; of these: 18675583 (89.53%) aligned 0 times 987982 (4.74%) aligned exactly 1 time 1196593 (5.74%) aligned >1 times 77.43% overall alignment rate Time searching: 00:45:01 Overall time: 00:45:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 5770777 / 30603238 = 0.1886 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:14:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:14:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:14:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:15:02: 1000000 INFO @ Sat, 03 Apr 2021 07:15:10: 2000000 INFO @ Sat, 03 Apr 2021 07:15:18: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:15:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:15:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:15:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:15:27: 4000000 INFO @ Sat, 03 Apr 2021 07:15:33: 1000000 INFO @ Sat, 03 Apr 2021 07:15:36: 5000000 INFO @ Sat, 03 Apr 2021 07:15:42: 2000000 INFO @ Sat, 03 Apr 2021 07:15:46: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:15:51: 3000000 INFO @ Sat, 03 Apr 2021 07:15:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:15:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:15:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:15:55: 7000000 INFO @ Sat, 03 Apr 2021 07:16:01: 4000000 INFO @ Sat, 03 Apr 2021 07:16:02: 1000000 INFO @ Sat, 03 Apr 2021 07:16:04: 8000000 INFO @ Sat, 03 Apr 2021 07:16:10: 5000000 INFO @ Sat, 03 Apr 2021 07:16:12: 2000000 INFO @ Sat, 03 Apr 2021 07:16:14: 9000000 INFO @ Sat, 03 Apr 2021 07:16:20: 6000000 INFO @ Sat, 03 Apr 2021 07:16:21: 3000000 INFO @ Sat, 03 Apr 2021 07:16:23: 10000000 INFO @ Sat, 03 Apr 2021 07:16:30: 7000000 INFO @ Sat, 03 Apr 2021 07:16:31: 4000000 INFO @ Sat, 03 Apr 2021 07:16:33: 11000000 INFO @ Sat, 03 Apr 2021 07:16:40: 8000000 INFO @ Sat, 03 Apr 2021 07:16:40: 5000000 INFO @ Sat, 03 Apr 2021 07:16:43: 12000000 INFO @ Sat, 03 Apr 2021 07:16:49: 9000000 INFO @ Sat, 03 Apr 2021 07:16:50: 6000000 INFO @ Sat, 03 Apr 2021 07:16:53: 13000000 INFO @ Sat, 03 Apr 2021 07:17:00: 10000000 INFO @ Sat, 03 Apr 2021 07:17:00: 7000000 INFO @ Sat, 03 Apr 2021 07:17:03: 14000000 INFO @ Sat, 03 Apr 2021 07:17:09: 11000000 INFO @ Sat, 03 Apr 2021 07:17:09: 8000000 INFO @ Sat, 03 Apr 2021 07:17:12: 15000000 INFO @ Sat, 03 Apr 2021 07:17:19: 12000000 INFO @ Sat, 03 Apr 2021 07:17:19: 9000000 INFO @ Sat, 03 Apr 2021 07:17:22: 16000000 INFO @ Sat, 03 Apr 2021 07:17:28: 10000000 INFO @ Sat, 03 Apr 2021 07:17:29: 13000000 INFO @ Sat, 03 Apr 2021 07:17:32: 17000000 INFO @ Sat, 03 Apr 2021 07:17:38: 11000000 INFO @ Sat, 03 Apr 2021 07:17:38: 14000000 INFO @ Sat, 03 Apr 2021 07:17:41: 18000000 INFO @ Sat, 03 Apr 2021 07:17:46: 12000000 INFO @ Sat, 03 Apr 2021 07:17:48: 15000000 INFO @ Sat, 03 Apr 2021 07:17:51: 19000000 INFO @ Sat, 03 Apr 2021 07:17:56: 13000000 INFO @ Sat, 03 Apr 2021 07:17:57: 16000000 INFO @ Sat, 03 Apr 2021 07:18:00: 20000000 INFO @ Sat, 03 Apr 2021 07:18:05: 14000000 INFO @ Sat, 03 Apr 2021 07:18:07: 17000000 INFO @ Sat, 03 Apr 2021 07:18:10: 21000000 INFO @ Sat, 03 Apr 2021 07:18:15: 15000000 INFO @ Sat, 03 Apr 2021 07:18:17: 18000000 INFO @ Sat, 03 Apr 2021 07:18:20: 22000000 INFO @ Sat, 03 Apr 2021 07:18:25: 16000000 INFO @ Sat, 03 Apr 2021 07:18:27: 19000000 INFO @ Sat, 03 Apr 2021 07:18:30: 23000000 INFO @ Sat, 03 Apr 2021 07:18:35: 17000000 INFO @ Sat, 03 Apr 2021 07:18:37: 20000000 INFO @ Sat, 03 Apr 2021 07:18:40: 24000000 INFO @ Sat, 03 Apr 2021 07:18:45: 18000000 INFO @ Sat, 03 Apr 2021 07:18:47: 21000000 INFO @ Sat, 03 Apr 2021 07:18:50: 25000000 INFO @ Sat, 03 Apr 2021 07:18:55: 19000000 INFO @ Sat, 03 Apr 2021 07:18:57: 22000000 INFO @ Sat, 03 Apr 2021 07:18:59: 26000000 INFO @ Sat, 03 Apr 2021 07:19:05: 20000000 INFO @ Sat, 03 Apr 2021 07:19:07: 23000000 INFO @ Sat, 03 Apr 2021 07:19:09: 27000000 INFO @ Sat, 03 Apr 2021 07:19:15: 21000000 INFO @ Sat, 03 Apr 2021 07:19:16: 24000000 INFO @ Sat, 03 Apr 2021 07:19:19: 28000000 INFO @ Sat, 03 Apr 2021 07:19:25: 22000000 INFO @ Sat, 03 Apr 2021 07:19:26: 25000000 INFO @ Sat, 03 Apr 2021 07:19:29: 29000000 INFO @ Sat, 03 Apr 2021 07:19:35: 23000000 INFO @ Sat, 03 Apr 2021 07:19:36: 26000000 INFO @ Sat, 03 Apr 2021 07:19:38: 30000000 INFO @ Sat, 03 Apr 2021 07:19:45: 24000000 INFO @ Sat, 03 Apr 2021 07:19:46: 27000000 INFO @ Sat, 03 Apr 2021 07:19:49: 31000000 INFO @ Sat, 03 Apr 2021 07:19:55: 25000000 INFO @ Sat, 03 Apr 2021 07:19:56: 28000000 INFO @ Sat, 03 Apr 2021 07:19:58: 32000000 INFO @ Sat, 03 Apr 2021 07:20:04: 26000000 INFO @ Sat, 03 Apr 2021 07:20:06: 29000000 INFO @ Sat, 03 Apr 2021 07:20:08: 33000000 INFO @ Sat, 03 Apr 2021 07:20:14: 27000000 INFO @ Sat, 03 Apr 2021 07:20:16: 30000000 INFO @ Sat, 03 Apr 2021 07:20:18: 34000000 INFO @ Sat, 03 Apr 2021 07:20:24: 28000000 INFO @ Sat, 03 Apr 2021 07:20:26: 31000000 INFO @ Sat, 03 Apr 2021 07:20:28: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:20:34: 29000000 INFO @ Sat, 03 Apr 2021 07:20:36: 32000000 INFO @ Sat, 03 Apr 2021 07:20:38: 36000000 INFO @ Sat, 03 Apr 2021 07:20:44: 30000000 INFO @ Sat, 03 Apr 2021 07:20:46: 33000000 INFO @ Sat, 03 Apr 2021 07:20:48: 37000000 INFO @ Sat, 03 Apr 2021 07:20:54: 31000000 INFO @ Sat, 03 Apr 2021 07:20:56: 34000000 INFO @ Sat, 03 Apr 2021 07:20:58: 38000000 INFO @ Sat, 03 Apr 2021 07:21:04: 32000000 INFO @ Sat, 03 Apr 2021 07:21:05: 35000000 INFO @ Sat, 03 Apr 2021 07:21:07: 39000000 INFO @ Sat, 03 Apr 2021 07:21:13: 33000000 INFO @ Sat, 03 Apr 2021 07:21:15: 36000000 INFO @ Sat, 03 Apr 2021 07:21:17: 40000000 INFO @ Sat, 03 Apr 2021 07:21:23: 34000000 INFO @ Sat, 03 Apr 2021 07:21:25: 37000000 INFO @ Sat, 03 Apr 2021 07:21:27: 41000000 INFO @ Sat, 03 Apr 2021 07:21:33: 35000000 INFO @ Sat, 03 Apr 2021 07:21:35: 38000000 INFO @ Sat, 03 Apr 2021 07:21:36: 42000000 INFO @ Sat, 03 Apr 2021 07:21:43: 36000000 INFO @ Sat, 03 Apr 2021 07:21:44: 39000000 INFO @ Sat, 03 Apr 2021 07:21:46: 43000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:21:53: 37000000 INFO @ Sat, 03 Apr 2021 07:21:55: 40000000 INFO @ Sat, 03 Apr 2021 07:21:56: 44000000 INFO @ Sat, 03 Apr 2021 07:22:02: 38000000 INFO @ Sat, 03 Apr 2021 07:22:04: 41000000 INFO @ Sat, 03 Apr 2021 07:22:06: 45000000 INFO @ Sat, 03 Apr 2021 07:22:12: 39000000 INFO @ Sat, 03 Apr 2021 07:22:14: 42000000 INFO @ Sat, 03 Apr 2021 07:22:15: 46000000 INFO @ Sat, 03 Apr 2021 07:22:22: 40000000 INFO @ Sat, 03 Apr 2021 07:22:24: 43000000 INFO @ Sat, 03 Apr 2021 07:22:25: 47000000 INFO @ Sat, 03 Apr 2021 07:22:31: 41000000 INFO @ Sat, 03 Apr 2021 07:22:34: 44000000 INFO @ Sat, 03 Apr 2021 07:22:35: 48000000 INFO @ Sat, 03 Apr 2021 07:22:41: 42000000 INFO @ Sat, 03 Apr 2021 07:22:44: 45000000 INFO @ Sat, 03 Apr 2021 07:22:45: 49000000 INFO @ Sat, 03 Apr 2021 07:22:51: 43000000 INFO @ Sat, 03 Apr 2021 07:22:53: 46000000 INFO @ Sat, 03 Apr 2021 07:22:55: 50000000 INFO @ Sat, 03 Apr 2021 07:23:01: 44000000 INFO @ Sat, 03 Apr 2021 07:23:03: 47000000 INFO @ Sat, 03 Apr 2021 07:23:04: 51000000 INFO @ Sat, 03 Apr 2021 07:23:10: 45000000 INFO @ Sat, 03 Apr 2021 07:23:13: 48000000 INFO @ Sat, 03 Apr 2021 07:23:14: 52000000 INFO @ Sat, 03 Apr 2021 07:23:19: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:23:19: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:23:19: #1 total tags in treatment: 21551078 INFO @ Sat, 03 Apr 2021 07:23:19: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:23:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:23:19: #1 tags after filtering in treatment: 15580786 INFO @ Sat, 03 Apr 2021 07:23:19: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 03 Apr 2021 07:23:19: #1 finished! INFO @ Sat, 03 Apr 2021 07:23:19: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:23:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:23:20: 46000000 INFO @ Sat, 03 Apr 2021 07:23:20: #2 number of paired peaks: 189 WARNING @ Sat, 03 Apr 2021 07:23:20: Fewer paired peaks (189) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 189 pairs to build model! INFO @ Sat, 03 Apr 2021 07:23:20: start model_add_line... INFO @ Sat, 03 Apr 2021 07:23:20: start X-correlation... INFO @ Sat, 03 Apr 2021 07:23:20: end of X-cor INFO @ Sat, 03 Apr 2021 07:23:20: #2 finished! INFO @ Sat, 03 Apr 2021 07:23:20: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 07:23:20: #2 alternative fragment length(s) may be 4,102 bps INFO @ Sat, 03 Apr 2021 07:23:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.05_model.r WARNING @ Sat, 03 Apr 2021 07:23:20: #2 Since the d (102) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:23:20: #2 You may need to consider one of the other alternative d(s): 4,102 WARNING @ Sat, 03 Apr 2021 07:23:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:23:20: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:23:20: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:23:22: 49000000 INFO @ Sat, 03 Apr 2021 07:23:29: 47000000 INFO @ Sat, 03 Apr 2021 07:23:32: 50000000 INFO @ Sat, 03 Apr 2021 07:23:39: 48000000 INFO @ Sat, 03 Apr 2021 07:23:41: 51000000 INFO @ Sat, 03 Apr 2021 07:23:48: 49000000 INFO @ Sat, 03 Apr 2021 07:23:50: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:23:51: 52000000 INFO @ Sat, 03 Apr 2021 07:23:56: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:23:56: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:23:56: #1 total tags in treatment: 21551078 INFO @ Sat, 03 Apr 2021 07:23:56: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:23:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:23:56: #1 tags after filtering in treatment: 15580786 INFO @ Sat, 03 Apr 2021 07:23:56: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 03 Apr 2021 07:23:56: #1 finished! INFO @ Sat, 03 Apr 2021 07:23:56: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:23:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:23:57: #2 number of paired peaks: 189 WARNING @ Sat, 03 Apr 2021 07:23:57: Fewer paired peaks (189) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 189 pairs to build model! INFO @ Sat, 03 Apr 2021 07:23:57: start model_add_line... INFO @ Sat, 03 Apr 2021 07:23:57: start X-correlation... INFO @ Sat, 03 Apr 2021 07:23:57: end of X-cor INFO @ Sat, 03 Apr 2021 07:23:57: #2 finished! INFO @ Sat, 03 Apr 2021 07:23:57: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 07:23:57: #2 alternative fragment length(s) may be 4,102 bps INFO @ Sat, 03 Apr 2021 07:23:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.10_model.r WARNING @ Sat, 03 Apr 2021 07:23:57: #2 Since the d (102) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:23:57: #2 You may need to consider one of the other alternative d(s): 4,102 WARNING @ Sat, 03 Apr 2021 07:23:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:23:57: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:23:57: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:23:57: 50000000 INFO @ Sat, 03 Apr 2021 07:24:05: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:24:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:24:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.05_summits.bed INFO @ Sat, 03 Apr 2021 07:24:05: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (7077 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:24:07: 51000000 INFO @ Sat, 03 Apr 2021 07:24:15: 52000000 INFO @ Sat, 03 Apr 2021 07:24:20: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:24:20: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:24:20: #1 total tags in treatment: 21551078 INFO @ Sat, 03 Apr 2021 07:24:20: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:24:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:24:20: #1 tags after filtering in treatment: 15580786 INFO @ Sat, 03 Apr 2021 07:24:20: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 03 Apr 2021 07:24:20: #1 finished! INFO @ Sat, 03 Apr 2021 07:24:20: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:24:20: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:24:21: #2 number of paired peaks: 189 WARNING @ Sat, 03 Apr 2021 07:24:21: Fewer paired peaks (189) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 189 pairs to build model! INFO @ Sat, 03 Apr 2021 07:24:21: start model_add_line... INFO @ Sat, 03 Apr 2021 07:24:22: start X-correlation... INFO @ Sat, 03 Apr 2021 07:24:22: end of X-cor INFO @ Sat, 03 Apr 2021 07:24:22: #2 finished! INFO @ Sat, 03 Apr 2021 07:24:22: #2 predicted fragment length is 102 bps INFO @ Sat, 03 Apr 2021 07:24:22: #2 alternative fragment length(s) may be 4,102 bps INFO @ Sat, 03 Apr 2021 07:24:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.20_model.r WARNING @ Sat, 03 Apr 2021 07:24:22: #2 Since the d (102) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:24:22: #2 You may need to consider one of the other alternative d(s): 4,102 WARNING @ Sat, 03 Apr 2021 07:24:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:24:22: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:24:22: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:24:26: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:24:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:24:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:24:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.10_summits.bed INFO @ Sat, 03 Apr 2021 07:24:42: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (3687 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:24:50: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:25:06: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:25:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:25:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3029135/SRX3029135.20_summits.bed INFO @ Sat, 03 Apr 2021 07:25:06: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1400 records, 4 fields): 3 millis CompletedMACS2peakCalling