Job ID = 12264769 SRX = SRX3029134 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 53096677 spots for SRR5860434/SRR5860434.sra Written 53096677 spots for SRR5860434/SRR5860434.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265604 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:56:57 53096677 reads; of these: 53096677 (100.00%) were paired; of these: 20072796 (37.80%) aligned concordantly 0 times 28709740 (54.07%) aligned concordantly exactly 1 time 4314141 (8.13%) aligned concordantly >1 times ---- 20072796 pairs aligned concordantly 0 times; of these: 6125456 (30.52%) aligned discordantly 1 time ---- 13947340 pairs aligned 0 times concordantly or discordantly; of these: 27894680 mates make up the pairs; of these: 24932523 (89.38%) aligned 0 times 1354393 (4.86%) aligned exactly 1 time 1607764 (5.76%) aligned >1 times 76.52% overall alignment rate Time searching: 00:56:57 Overall time: 00:56:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7739385 / 38690166 = 0.2000 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:59:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:59:31: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:59:31: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:59:39: 1000000 INFO @ Sat, 03 Apr 2021 07:59:48: 2000000 INFO @ Sat, 03 Apr 2021 07:59:57: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:00:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:00:01: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:00:01: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:00:06: 4000000 INFO @ Sat, 03 Apr 2021 08:00:10: 1000000 INFO @ Sat, 03 Apr 2021 08:00:15: 5000000 INFO @ Sat, 03 Apr 2021 08:00:20: 2000000 INFO @ Sat, 03 Apr 2021 08:00:24: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:00:29: 3000000 INFO @ Sat, 03 Apr 2021 08:00:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:00:31: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:00:31: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:00:33: 7000000 INFO @ Sat, 03 Apr 2021 08:00:38: 4000000 INFO @ Sat, 03 Apr 2021 08:00:41: 1000000 INFO @ Sat, 03 Apr 2021 08:00:42: 8000000 INFO @ Sat, 03 Apr 2021 08:00:48: 5000000 INFO @ Sat, 03 Apr 2021 08:00:50: 2000000 INFO @ Sat, 03 Apr 2021 08:00:51: 9000000 INFO @ Sat, 03 Apr 2021 08:00:57: 6000000 INFO @ Sat, 03 Apr 2021 08:01:00: 3000000 INFO @ Sat, 03 Apr 2021 08:01:00: 10000000 INFO @ Sat, 03 Apr 2021 08:01:07: 7000000 INFO @ Sat, 03 Apr 2021 08:01:09: 4000000 INFO @ Sat, 03 Apr 2021 08:01:10: 11000000 INFO @ Sat, 03 Apr 2021 08:01:16: 8000000 INFO @ Sat, 03 Apr 2021 08:01:19: 5000000 INFO @ Sat, 03 Apr 2021 08:01:19: 12000000 INFO @ Sat, 03 Apr 2021 08:01:25: 9000000 INFO @ Sat, 03 Apr 2021 08:01:28: 6000000 INFO @ Sat, 03 Apr 2021 08:01:28: 13000000 INFO @ Sat, 03 Apr 2021 08:01:34: 10000000 INFO @ Sat, 03 Apr 2021 08:01:37: 7000000 INFO @ Sat, 03 Apr 2021 08:01:38: 14000000 INFO @ Sat, 03 Apr 2021 08:01:43: 11000000 INFO @ Sat, 03 Apr 2021 08:01:46: 15000000 INFO @ Sat, 03 Apr 2021 08:01:46: 8000000 INFO @ Sat, 03 Apr 2021 08:01:53: 12000000 INFO @ Sat, 03 Apr 2021 08:01:55: 16000000 INFO @ Sat, 03 Apr 2021 08:01:55: 9000000 INFO @ Sat, 03 Apr 2021 08:02:02: 13000000 INFO @ Sat, 03 Apr 2021 08:02:04: 17000000 INFO @ Sat, 03 Apr 2021 08:02:05: 10000000 INFO @ Sat, 03 Apr 2021 08:02:11: 14000000 INFO @ Sat, 03 Apr 2021 08:02:13: 18000000 INFO @ Sat, 03 Apr 2021 08:02:14: 11000000 INFO @ Sat, 03 Apr 2021 08:02:21: 15000000 INFO @ Sat, 03 Apr 2021 08:02:23: 19000000 INFO @ Sat, 03 Apr 2021 08:02:23: 12000000 INFO @ Sat, 03 Apr 2021 08:02:30: 16000000 INFO @ Sat, 03 Apr 2021 08:02:32: 20000000 INFO @ Sat, 03 Apr 2021 08:02:32: 13000000 INFO @ Sat, 03 Apr 2021 08:02:39: 17000000 INFO @ Sat, 03 Apr 2021 08:02:41: 21000000 INFO @ Sat, 03 Apr 2021 08:02:42: 14000000 INFO @ Sat, 03 Apr 2021 08:02:48: 18000000 INFO @ Sat, 03 Apr 2021 08:02:51: 22000000 INFO @ Sat, 03 Apr 2021 08:02:51: 15000000 INFO @ Sat, 03 Apr 2021 08:02:57: 19000000 INFO @ Sat, 03 Apr 2021 08:03:00: 23000000 INFO @ Sat, 03 Apr 2021 08:03:00: 16000000 INFO @ Sat, 03 Apr 2021 08:03:07: 20000000 INFO @ Sat, 03 Apr 2021 08:03:09: 24000000 INFO @ Sat, 03 Apr 2021 08:03:09: 17000000 INFO @ Sat, 03 Apr 2021 08:03:16: 21000000 INFO @ Sat, 03 Apr 2021 08:03:19: 25000000 INFO @ Sat, 03 Apr 2021 08:03:19: 18000000 INFO @ Sat, 03 Apr 2021 08:03:26: 22000000 INFO @ Sat, 03 Apr 2021 08:03:28: 26000000 INFO @ Sat, 03 Apr 2021 08:03:28: 19000000 INFO @ Sat, 03 Apr 2021 08:03:35: 23000000 INFO @ Sat, 03 Apr 2021 08:03:38: 20000000 INFO @ Sat, 03 Apr 2021 08:03:38: 27000000 INFO @ Sat, 03 Apr 2021 08:03:44: 24000000 INFO @ Sat, 03 Apr 2021 08:03:47: 21000000 INFO @ Sat, 03 Apr 2021 08:03:47: 28000000 INFO @ Sat, 03 Apr 2021 08:03:53: 25000000 INFO @ Sat, 03 Apr 2021 08:03:56: 22000000 INFO @ Sat, 03 Apr 2021 08:03:57: 29000000 INFO @ Sat, 03 Apr 2021 08:04:03: 26000000 INFO @ Sat, 03 Apr 2021 08:04:06: 23000000 INFO @ Sat, 03 Apr 2021 08:04:06: 30000000 INFO @ Sat, 03 Apr 2021 08:04:13: 27000000 INFO @ Sat, 03 Apr 2021 08:04:15: 24000000 INFO @ Sat, 03 Apr 2021 08:04:15: 31000000 INFO @ Sat, 03 Apr 2021 08:04:22: 28000000 INFO @ Sat, 03 Apr 2021 08:04:23: 32000000 INFO @ Sat, 03 Apr 2021 08:04:24: 25000000 INFO @ Sat, 03 Apr 2021 08:04:31: 29000000 INFO @ Sat, 03 Apr 2021 08:04:32: 33000000 INFO @ Sat, 03 Apr 2021 08:04:33: 26000000 INFO @ Sat, 03 Apr 2021 08:04:40: 30000000 INFO @ Sat, 03 Apr 2021 08:04:41: 34000000 INFO @ Sat, 03 Apr 2021 08:04:43: 27000000 INFO @ Sat, 03 Apr 2021 08:04:49: 31000000 INFO @ Sat, 03 Apr 2021 08:04:50: 35000000 INFO @ Sat, 03 Apr 2021 08:04:52: 28000000 INFO @ Sat, 03 Apr 2021 08:04:58: 32000000 INFO @ Sat, 03 Apr 2021 08:04:59: 36000000 INFO @ Sat, 03 Apr 2021 08:05:01: 29000000 INFO @ Sat, 03 Apr 2021 08:05:07: 33000000 INFO @ Sat, 03 Apr 2021 08:05:08: 37000000 INFO @ Sat, 03 Apr 2021 08:05:10: 30000000 INFO @ Sat, 03 Apr 2021 08:05:16: 34000000 INFO @ Sat, 03 Apr 2021 08:05:17: 38000000 INFO @ Sat, 03 Apr 2021 08:05:19: 31000000 INFO @ Sat, 03 Apr 2021 08:05:25: 35000000 INFO @ Sat, 03 Apr 2021 08:05:26: 39000000 INFO @ Sat, 03 Apr 2021 08:05:28: 32000000 INFO @ Sat, 03 Apr 2021 08:05:34: 36000000 INFO @ Sat, 03 Apr 2021 08:05:35: 40000000 INFO @ Sat, 03 Apr 2021 08:05:37: 33000000 INFO @ Sat, 03 Apr 2021 08:05:43: 37000000 INFO @ Sat, 03 Apr 2021 08:05:44: 41000000 INFO @ Sat, 03 Apr 2021 08:05:47: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:05:52: 38000000 INFO @ Sat, 03 Apr 2021 08:05:53: 42000000 INFO @ Sat, 03 Apr 2021 08:05:56: 35000000 INFO @ Sat, 03 Apr 2021 08:06:01: 39000000 INFO @ Sat, 03 Apr 2021 08:06:02: 43000000 INFO @ Sat, 03 Apr 2021 08:06:05: 36000000 INFO @ Sat, 03 Apr 2021 08:06:10: 40000000 INFO @ Sat, 03 Apr 2021 08:06:11: 44000000 INFO @ Sat, 03 Apr 2021 08:06:14: 37000000 INFO @ Sat, 03 Apr 2021 08:06:19: 41000000 INFO @ Sat, 03 Apr 2021 08:06:20: 45000000 INFO @ Sat, 03 Apr 2021 08:06:23: 38000000 INFO @ Sat, 03 Apr 2021 08:06:28: 42000000 INFO @ Sat, 03 Apr 2021 08:06:29: 46000000 INFO @ Sat, 03 Apr 2021 08:06:32: 39000000 INFO @ Sat, 03 Apr 2021 08:06:38: 43000000 INFO @ Sat, 03 Apr 2021 08:06:38: 47000000 INFO @ Sat, 03 Apr 2021 08:06:41: 40000000 INFO @ Sat, 03 Apr 2021 08:06:46: 44000000 INFO @ Sat, 03 Apr 2021 08:06:48: 48000000 INFO @ Sat, 03 Apr 2021 08:06:50: 41000000 INFO @ Sat, 03 Apr 2021 08:06:55: 45000000 INFO @ Sat, 03 Apr 2021 08:06:57: 49000000 INFO @ Sat, 03 Apr 2021 08:06:59: 42000000 INFO @ Sat, 03 Apr 2021 08:07:04: 46000000 INFO @ Sat, 03 Apr 2021 08:07:07: 50000000 INFO @ Sat, 03 Apr 2021 08:07:07: 43000000 INFO @ Sat, 03 Apr 2021 08:07:13: 47000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:07:16: 44000000 INFO @ Sat, 03 Apr 2021 08:07:17: 51000000 INFO @ Sat, 03 Apr 2021 08:07:22: 48000000 INFO @ Sat, 03 Apr 2021 08:07:25: 45000000 INFO @ Sat, 03 Apr 2021 08:07:27: 52000000 INFO @ Sat, 03 Apr 2021 08:07:31: 49000000 INFO @ Sat, 03 Apr 2021 08:07:33: 46000000 INFO @ Sat, 03 Apr 2021 08:07:36: 53000000 INFO @ Sat, 03 Apr 2021 08:07:41: 50000000 INFO @ Sat, 03 Apr 2021 08:07:42: 47000000 INFO @ Sat, 03 Apr 2021 08:07:45: 54000000 INFO @ Sat, 03 Apr 2021 08:07:51: 51000000 INFO @ Sat, 03 Apr 2021 08:07:51: 48000000 INFO @ Sat, 03 Apr 2021 08:07:55: 55000000 INFO @ Sat, 03 Apr 2021 08:08:00: 52000000 INFO @ Sat, 03 Apr 2021 08:08:01: 49000000 INFO @ Sat, 03 Apr 2021 08:08:04: 56000000 INFO @ Sat, 03 Apr 2021 08:08:09: 53000000 INFO @ Sat, 03 Apr 2021 08:08:10: 50000000 INFO @ Sat, 03 Apr 2021 08:08:13: 57000000 INFO @ Sat, 03 Apr 2021 08:08:19: 54000000 INFO @ Sat, 03 Apr 2021 08:08:20: 51000000 INFO @ Sat, 03 Apr 2021 08:08:22: 58000000 INFO @ Sat, 03 Apr 2021 08:08:28: 55000000 INFO @ Sat, 03 Apr 2021 08:08:29: 52000000 INFO @ Sat, 03 Apr 2021 08:08:31: 59000000 INFO @ Sat, 03 Apr 2021 08:08:37: 56000000 INFO @ Sat, 03 Apr 2021 08:08:39: 53000000 INFO @ Sat, 03 Apr 2021 08:08:40: 60000000 INFO @ Sat, 03 Apr 2021 08:08:46: 57000000 INFO @ Sat, 03 Apr 2021 08:08:48: 54000000 INFO @ Sat, 03 Apr 2021 08:08:49: 61000000 INFO @ Sat, 03 Apr 2021 08:08:55: 58000000 INFO @ Sat, 03 Apr 2021 08:08:57: 55000000 INFO @ Sat, 03 Apr 2021 08:08:59: 62000000 INFO @ Sat, 03 Apr 2021 08:09:04: 59000000 INFO @ Sat, 03 Apr 2021 08:09:07: 56000000 INFO @ Sat, 03 Apr 2021 08:09:08: 63000000 INFO @ Sat, 03 Apr 2021 08:09:13: 60000000 INFO @ Sat, 03 Apr 2021 08:09:16: 57000000 INFO @ Sat, 03 Apr 2021 08:09:17: 64000000 INFO @ Sat, 03 Apr 2021 08:09:23: 61000000 INFO @ Sat, 03 Apr 2021 08:09:25: 58000000 INFO @ Sat, 03 Apr 2021 08:09:25: 65000000 INFO @ Sat, 03 Apr 2021 08:09:32: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:09:32: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:09:32: #1 total tags in treatment: 26617411 INFO @ Sat, 03 Apr 2021 08:09:32: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:09:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:09:32: 62000000 INFO @ Sat, 03 Apr 2021 08:09:33: #1 tags after filtering in treatment: 18452455 INFO @ Sat, 03 Apr 2021 08:09:33: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 08:09:33: #1 finished! INFO @ Sat, 03 Apr 2021 08:09:33: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:09:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:09:33: 59000000 INFO @ Sat, 03 Apr 2021 08:09:34: #2 number of paired peaks: 133 WARNING @ Sat, 03 Apr 2021 08:09:34: Fewer paired peaks (133) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 133 pairs to build model! INFO @ Sat, 03 Apr 2021 08:09:34: start model_add_line... INFO @ Sat, 03 Apr 2021 08:09:34: start X-correlation... INFO @ Sat, 03 Apr 2021 08:09:34: end of X-cor INFO @ Sat, 03 Apr 2021 08:09:34: #2 finished! INFO @ Sat, 03 Apr 2021 08:09:34: #2 predicted fragment length is 69 bps INFO @ Sat, 03 Apr 2021 08:09:34: #2 alternative fragment length(s) may be 3,69,104 bps INFO @ Sat, 03 Apr 2021 08:09:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.05_model.r WARNING @ Sat, 03 Apr 2021 08:09:34: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:09:34: #2 You may need to consider one of the other alternative d(s): 3,69,104 WARNING @ Sat, 03 Apr 2021 08:09:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:09:34: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:09:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:09:41: 63000000 INFO @ Sat, 03 Apr 2021 08:09:42: 60000000 INFO @ Sat, 03 Apr 2021 08:09:49: 64000000 INFO @ Sat, 03 Apr 2021 08:09:51: 61000000 INFO @ Sat, 03 Apr 2021 08:09:57: 65000000 INFO @ Sat, 03 Apr 2021 08:10:00: 62000000 INFO @ Sat, 03 Apr 2021 08:10:04: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:10:04: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:10:04: #1 total tags in treatment: 26617411 INFO @ Sat, 03 Apr 2021 08:10:04: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:10:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:10:05: #1 tags after filtering in treatment: 18452455 INFO @ Sat, 03 Apr 2021 08:10:05: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 08:10:05: #1 finished! INFO @ Sat, 03 Apr 2021 08:10:05: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:10:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:10:06: #2 number of paired peaks: 133 WARNING @ Sat, 03 Apr 2021 08:10:06: Fewer paired peaks (133) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 133 pairs to build model! INFO @ Sat, 03 Apr 2021 08:10:06: start model_add_line... INFO @ Sat, 03 Apr 2021 08:10:06: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:10:06: start X-correlation... INFO @ Sat, 03 Apr 2021 08:10:06: end of X-cor INFO @ Sat, 03 Apr 2021 08:10:06: #2 finished! INFO @ Sat, 03 Apr 2021 08:10:06: #2 predicted fragment length is 69 bps INFO @ Sat, 03 Apr 2021 08:10:06: #2 alternative fragment length(s) may be 3,69,104 bps INFO @ Sat, 03 Apr 2021 08:10:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.10_model.r WARNING @ Sat, 03 Apr 2021 08:10:06: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:10:06: #2 You may need to consider one of the other alternative d(s): 3,69,104 WARNING @ Sat, 03 Apr 2021 08:10:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:10:06: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:10:06: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:10:09: 63000000 INFO @ Sat, 03 Apr 2021 08:10:17: 64000000 INFO @ Sat, 03 Apr 2021 08:10:23: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:10:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:10:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.05_summits.bed INFO @ Sat, 03 Apr 2021 08:10:23: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (7604 records, 4 fields): 64 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:10:24: 65000000 INFO @ Sat, 03 Apr 2021 08:10:31: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:10:31: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:10:31: #1 total tags in treatment: 26617411 INFO @ Sat, 03 Apr 2021 08:10:31: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:10:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:10:31: #1 tags after filtering in treatment: 18452455 INFO @ Sat, 03 Apr 2021 08:10:31: #1 Redundant rate of treatment: 0.31 INFO @ Sat, 03 Apr 2021 08:10:31: #1 finished! INFO @ Sat, 03 Apr 2021 08:10:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:10:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:10:32: #2 number of paired peaks: 133 WARNING @ Sat, 03 Apr 2021 08:10:32: Fewer paired peaks (133) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 133 pairs to build model! INFO @ Sat, 03 Apr 2021 08:10:32: start model_add_line... INFO @ Sat, 03 Apr 2021 08:10:33: start X-correlation... INFO @ Sat, 03 Apr 2021 08:10:33: end of X-cor INFO @ Sat, 03 Apr 2021 08:10:33: #2 finished! INFO @ Sat, 03 Apr 2021 08:10:33: #2 predicted fragment length is 69 bps INFO @ Sat, 03 Apr 2021 08:10:33: #2 alternative fragment length(s) may be 3,69,104 bps INFO @ Sat, 03 Apr 2021 08:10:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.20_model.r WARNING @ Sat, 03 Apr 2021 08:10:33: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:10:33: #2 You may need to consider one of the other alternative d(s): 3,69,104 WARNING @ Sat, 03 Apr 2021 08:10:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:10:33: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:10:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:10:38: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:10:54: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:10:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:10:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.10_summits.bed INFO @ Sat, 03 Apr 2021 08:10:54: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (3545 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:11:04: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:11:21: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:11:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:11:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3029134/SRX3029134.20_summits.bed INFO @ Sat, 03 Apr 2021 08:11:21: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (937 records, 4 fields): 3 millis CompletedMACS2peakCalling