Job ID = 11170821 sra ファイルのダウンロード中... Completed: 2190240K bytes transferred in 212 seconds (84440K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 81489952 spots for /home/okishinya/chipatlas/results/ce10/SRX2973388/SRR5786981.sra Written 81489952 spots for /home/okishinya/chipatlas/results/ce10/SRX2973388/SRR5786981.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:33:22 81489952 reads; of these: 81489952 (100.00%) were unpaired; of these: 3649729 (4.48%) aligned 0 times 64462262 (79.10%) aligned exactly 1 time 13377961 (16.42%) aligned >1 times 95.52% overall alignment rate Time searching: 00:33:22 Overall time: 00:33:22 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 21553583 / 77840223 = 0.2769 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:24:35: # Command line: callpeak -t SRX2973388.bam -f BAM -g ce -n SRX2973388.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2973388.10 # format = BAM # ChIP-seq file = ['SRX2973388.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:24:35: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:24:35: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:24:35: # Command line: callpeak -t SRX2973388.bam -f BAM -g ce -n SRX2973388.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2973388.20 # format = BAM # ChIP-seq file = ['SRX2973388.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:24:35: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:24:35: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:24:35: # Command line: callpeak -t SRX2973388.bam -f BAM -g ce -n SRX2973388.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2973388.05 # format = BAM # ChIP-seq file = ['SRX2973388.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:24:35: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:24:35: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:24:43: 1000000 INFO @ Sat, 08 Sep 2018 12:24:43: 1000000 INFO @ Sat, 08 Sep 2018 12:24:43: 1000000 INFO @ Sat, 08 Sep 2018 12:24:50: 2000000 INFO @ Sat, 08 Sep 2018 12:24:50: 2000000 INFO @ Sat, 08 Sep 2018 12:24:51: 2000000 INFO @ Sat, 08 Sep 2018 12:24:58: 3000000 INFO @ Sat, 08 Sep 2018 12:24:58: 3000000 INFO @ Sat, 08 Sep 2018 12:24:58: 3000000 INFO @ Sat, 08 Sep 2018 12:25:06: 4000000 INFO @ Sat, 08 Sep 2018 12:25:06: 4000000 INFO @ Sat, 08 Sep 2018 12:25:06: 4000000 INFO @ Sat, 08 Sep 2018 12:25:14: 5000000 INFO @ Sat, 08 Sep 2018 12:25:14: 5000000 INFO @ Sat, 08 Sep 2018 12:25:14: 5000000 INFO @ Sat, 08 Sep 2018 12:25:21: 6000000 INFO @ Sat, 08 Sep 2018 12:25:21: 6000000 INFO @ Sat, 08 Sep 2018 12:25:22: 6000000 INFO @ Sat, 08 Sep 2018 12:25:29: 7000000 INFO @ Sat, 08 Sep 2018 12:25:29: 7000000 INFO @ Sat, 08 Sep 2018 12:25:30: 7000000 INFO @ Sat, 08 Sep 2018 12:25:37: 8000000 INFO @ Sat, 08 Sep 2018 12:25:37: 8000000 INFO @ Sat, 08 Sep 2018 12:25:38: 8000000 INFO @ Sat, 08 Sep 2018 12:25:45: 9000000 INFO @ Sat, 08 Sep 2018 12:25:45: 9000000 INFO @ Sat, 08 Sep 2018 12:25:45: 9000000 INFO @ Sat, 08 Sep 2018 12:25:52: 10000000 INFO @ Sat, 08 Sep 2018 12:25:52: 10000000 INFO @ Sat, 08 Sep 2018 12:25:53: 10000000 INFO @ Sat, 08 Sep 2018 12:26:00: 11000000 INFO @ Sat, 08 Sep 2018 12:26:00: 11000000 INFO @ Sat, 08 Sep 2018 12:26:01: 11000000 INFO @ Sat, 08 Sep 2018 12:26:08: 12000000 INFO @ Sat, 08 Sep 2018 12:26:08: 12000000 INFO @ Sat, 08 Sep 2018 12:26:09: 12000000 INFO @ Sat, 08 Sep 2018 12:26:16: 13000000 INFO @ Sat, 08 Sep 2018 12:26:16: 13000000 INFO @ Sat, 08 Sep 2018 12:26:17: 13000000 INFO @ Sat, 08 Sep 2018 12:26:23: 14000000 INFO @ Sat, 08 Sep 2018 12:26:23: 14000000 INFO @ Sat, 08 Sep 2018 12:26:25: 14000000 INFO @ Sat, 08 Sep 2018 12:26:31: 15000000 INFO @ Sat, 08 Sep 2018 12:26:31: 15000000 INFO @ Sat, 08 Sep 2018 12:26:33: 15000000 INFO @ Sat, 08 Sep 2018 12:26:39: 16000000 INFO @ Sat, 08 Sep 2018 12:26:39: 16000000 INFO @ Sat, 08 Sep 2018 12:26:40: 16000000 INFO @ Sat, 08 Sep 2018 12:26:47: 17000000 INFO @ Sat, 08 Sep 2018 12:26:47: 17000000 INFO @ Sat, 08 Sep 2018 12:26:48: 17000000 INFO @ Sat, 08 Sep 2018 12:26:54: 18000000 INFO @ Sat, 08 Sep 2018 12:26:54: 18000000 INFO @ Sat, 08 Sep 2018 12:26:56: 18000000 INFO @ Sat, 08 Sep 2018 12:27:02: 19000000 INFO @ Sat, 08 Sep 2018 12:27:02: 19000000 INFO @ Sat, 08 Sep 2018 12:27:04: 19000000 INFO @ Sat, 08 Sep 2018 12:27:10: 20000000 INFO @ Sat, 08 Sep 2018 12:27:10: 20000000 INFO @ Sat, 08 Sep 2018 12:27:12: 20000000 INFO @ Sat, 08 Sep 2018 12:27:18: 21000000 INFO @ Sat, 08 Sep 2018 12:27:18: 21000000 INFO @ Sat, 08 Sep 2018 12:27:19: 21000000 INFO @ Sat, 08 Sep 2018 12:27:25: 22000000 INFO @ Sat, 08 Sep 2018 12:27:25: 22000000 INFO @ Sat, 08 Sep 2018 12:27:27: 22000000 INFO @ Sat, 08 Sep 2018 12:27:33: 23000000 INFO @ Sat, 08 Sep 2018 12:27:33: 23000000 INFO @ Sat, 08 Sep 2018 12:27:35: 23000000 INFO @ Sat, 08 Sep 2018 12:27:41: 24000000 INFO @ Sat, 08 Sep 2018 12:27:41: 24000000 INFO @ Sat, 08 Sep 2018 12:27:43: 24000000 INFO @ Sat, 08 Sep 2018 12:27:49: 25000000 INFO @ Sat, 08 Sep 2018 12:27:49: 25000000 INFO @ Sat, 08 Sep 2018 12:27:51: 25000000 INFO @ Sat, 08 Sep 2018 12:27:56: 26000000 INFO @ Sat, 08 Sep 2018 12:27:56: 26000000 INFO @ Sat, 08 Sep 2018 12:27:58: 26000000 INFO @ Sat, 08 Sep 2018 12:28:04: 27000000 INFO @ Sat, 08 Sep 2018 12:28:04: 27000000 INFO @ Sat, 08 Sep 2018 12:28:06: 27000000 INFO @ Sat, 08 Sep 2018 12:28:12: 28000000 INFO @ Sat, 08 Sep 2018 12:28:12: 28000000 INFO @ Sat, 08 Sep 2018 12:28:14: 28000000 INFO @ Sat, 08 Sep 2018 12:28:20: 29000000 INFO @ Sat, 08 Sep 2018 12:28:20: 29000000 INFO @ Sat, 08 Sep 2018 12:28:22: 29000000 INFO @ Sat, 08 Sep 2018 12:28:27: 30000000 INFO @ Sat, 08 Sep 2018 12:28:27: 30000000 INFO @ Sat, 08 Sep 2018 12:28:29: 30000000 INFO @ Sat, 08 Sep 2018 12:28:35: 31000000 INFO @ Sat, 08 Sep 2018 12:28:35: 31000000 INFO @ Sat, 08 Sep 2018 12:28:37: 31000000 INFO @ Sat, 08 Sep 2018 12:28:43: 32000000 INFO @ Sat, 08 Sep 2018 12:28:43: 32000000 INFO @ Sat, 08 Sep 2018 12:28:45: 32000000 INFO @ Sat, 08 Sep 2018 12:28:50: 33000000 INFO @ Sat, 08 Sep 2018 12:28:50: 33000000 INFO @ Sat, 08 Sep 2018 12:28:52: 33000000 INFO @ Sat, 08 Sep 2018 12:28:58: 34000000 INFO @ Sat, 08 Sep 2018 12:28:58: 34000000 INFO @ Sat, 08 Sep 2018 12:29:00: 34000000 INFO @ Sat, 08 Sep 2018 12:29:06: 35000000 INFO @ Sat, 08 Sep 2018 12:29:06: 35000000 INFO @ Sat, 08 Sep 2018 12:29:08: 35000000 INFO @ Sat, 08 Sep 2018 12:29:13: 36000000 INFO @ Sat, 08 Sep 2018 12:29:13: 36000000 INFO @ Sat, 08 Sep 2018 12:29:15: 36000000 INFO @ Sat, 08 Sep 2018 12:29:21: 37000000 INFO @ Sat, 08 Sep 2018 12:29:21: 37000000 INFO @ Sat, 08 Sep 2018 12:29:23: 37000000 INFO @ Sat, 08 Sep 2018 12:29:28: 38000000 INFO @ Sat, 08 Sep 2018 12:29:28: 38000000 INFO @ Sat, 08 Sep 2018 12:29:31: 38000000 INFO @ Sat, 08 Sep 2018 12:29:36: 39000000 INFO @ Sat, 08 Sep 2018 12:29:36: 39000000 INFO @ Sat, 08 Sep 2018 12:29:38: 39000000 INFO @ Sat, 08 Sep 2018 12:29:44: 40000000 INFO @ Sat, 08 Sep 2018 12:29:44: 40000000 INFO @ Sat, 08 Sep 2018 12:29:46: 40000000 INFO @ Sat, 08 Sep 2018 12:29:51: 41000000 INFO @ Sat, 08 Sep 2018 12:29:51: 41000000 INFO @ Sat, 08 Sep 2018 12:29:54: 41000000 INFO @ Sat, 08 Sep 2018 12:29:59: 42000000 INFO @ Sat, 08 Sep 2018 12:29:59: 42000000 INFO @ Sat, 08 Sep 2018 12:30:01: 42000000 INFO @ Sat, 08 Sep 2018 12:30:06: 43000000 INFO @ Sat, 08 Sep 2018 12:30:06: 43000000 INFO @ Sat, 08 Sep 2018 12:30:09: 43000000 INFO @ Sat, 08 Sep 2018 12:30:14: 44000000 INFO @ Sat, 08 Sep 2018 12:30:14: 44000000 INFO @ Sat, 08 Sep 2018 12:30:17: 44000000 INFO @ Sat, 08 Sep 2018 12:30:22: 45000000 INFO @ Sat, 08 Sep 2018 12:30:22: 45000000 INFO @ Sat, 08 Sep 2018 12:30:24: 45000000 INFO @ Sat, 08 Sep 2018 12:30:29: 46000000 INFO @ Sat, 08 Sep 2018 12:30:29: 46000000 INFO @ Sat, 08 Sep 2018 12:30:32: 46000000 INFO @ Sat, 08 Sep 2018 12:30:37: 47000000 INFO @ Sat, 08 Sep 2018 12:30:37: 47000000 INFO @ Sat, 08 Sep 2018 12:30:40: 47000000 INFO @ Sat, 08 Sep 2018 12:30:45: 48000000 INFO @ Sat, 08 Sep 2018 12:30:45: 48000000 INFO @ Sat, 08 Sep 2018 12:30:48: 48000000 INFO @ Sat, 08 Sep 2018 12:30:52: 49000000 INFO @ Sat, 08 Sep 2018 12:30:52: 49000000 INFO @ Sat, 08 Sep 2018 12:30:55: 49000000 INFO @ Sat, 08 Sep 2018 12:31:00: 50000000 INFO @ Sat, 08 Sep 2018 12:31:00: 50000000 INFO @ Sat, 08 Sep 2018 12:31:03: 50000000 INFO @ Sat, 08 Sep 2018 12:31:07: 51000000 INFO @ Sat, 08 Sep 2018 12:31:07: 51000000 INFO @ Sat, 08 Sep 2018 12:31:11: 51000000 INFO @ Sat, 08 Sep 2018 12:31:15: 52000000 INFO @ Sat, 08 Sep 2018 12:31:15: 52000000 INFO @ Sat, 08 Sep 2018 12:31:18: 52000000 INFO @ Sat, 08 Sep 2018 12:31:23: 53000000 INFO @ Sat, 08 Sep 2018 12:31:23: 53000000 INFO @ Sat, 08 Sep 2018 12:31:26: 53000000 INFO @ Sat, 08 Sep 2018 12:31:30: 54000000 INFO @ Sat, 08 Sep 2018 12:31:30: 54000000 INFO @ Sat, 08 Sep 2018 12:31:34: 54000000 INFO @ Sat, 08 Sep 2018 12:31:38: 55000000 INFO @ Sat, 08 Sep 2018 12:31:38: 55000000 INFO @ Sat, 08 Sep 2018 12:31:41: 55000000 INFO @ Sat, 08 Sep 2018 12:31:45: 56000000 INFO @ Sat, 08 Sep 2018 12:31:45: 56000000 INFO @ Sat, 08 Sep 2018 12:31:48: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:31:48: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:31:48: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:31:48: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:31:48: #1 total tags in treatment: 56286640 INFO @ Sat, 08 Sep 2018 12:31:48: #1 total tags in treatment: 56286640 INFO @ Sat, 08 Sep 2018 12:31:48: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:31:48: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:31:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:31:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:31:49: 56000000 INFO @ Sat, 08 Sep 2018 12:31:49: #1 tags after filtering in treatment: 56286640 INFO @ Sat, 08 Sep 2018 12:31:49: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:31:49: #1 finished! INFO @ Sat, 08 Sep 2018 12:31:49: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:31:49: #1 tags after filtering in treatment: 56286640 INFO @ Sat, 08 Sep 2018 12:31:49: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:31:49: #1 finished! INFO @ Sat, 08 Sep 2018 12:31:49: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:31:49: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:31:49: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:31:51: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:31:51: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:31:51: #1 total tags in treatment: 56286640 INFO @ Sat, 08 Sep 2018 12:31:51: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:31:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:31:53: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:31:53: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:31:53: Process for pairing-model is terminated! INFO @ Sat, 08 Sep 2018 12:31:53: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:31:53: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:31:53: Process for pairing-model is terminated! cat: SRX2973388.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません INFO @ Sat, 08 Sep 2018 12:31:53: #1 tags after filtering in treatment: 56286640 INFO @ Sat, 08 Sep 2018 12:31:53: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:31:53: #1 finished! INFO @ Sat, 08 Sep 2018 12:31:53: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:31:53: #2 looking for paired plus/minus strand peaks... cat: SRX2973388.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973388.05_model.r'rm: cannot remove `SRX2973388.10_model.r': そのようなファイルやディレクトリはありません : そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973388.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973388.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973388.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973388.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:31:57: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:31:57: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:31:57: Process for pairing-model is terminated! cat: SRX2973388.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973388.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973388.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973388.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。