Job ID = 11170814 sra ファイルのダウンロード中... Completed: 1545868K bytes transferred in 242 seconds (52124K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 54119838 spots for /home/okishinya/chipatlas/results/ce10/SRX2965739/SRR5766324.sra Written 54119838 spots for /home/okishinya/chipatlas/results/ce10/SRX2965739/SRR5766324.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:22:43 54119838 reads; of these: 54119838 (100.00%) were unpaired; of these: 1596944 (2.95%) aligned 0 times 44662530 (82.53%) aligned exactly 1 time 7860364 (14.52%) aligned >1 times 97.05% overall alignment rate Time searching: 00:22:43 Overall time: 00:22:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 13339183 / 52522894 = 0.2540 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:08:12: # Command line: callpeak -t SRX2965739.bam -f BAM -g ce -n SRX2965739.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2965739.20 # format = BAM # ChIP-seq file = ['SRX2965739.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:08:12: # Command line: callpeak -t SRX2965739.bam -f BAM -g ce -n SRX2965739.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2965739.05 # format = BAM # ChIP-seq file = ['SRX2965739.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:08:12: # Command line: callpeak -t SRX2965739.bam -f BAM -g ce -n SRX2965739.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2965739.10 # format = BAM # ChIP-seq file = ['SRX2965739.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:08:12: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:08:12: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:08:12: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:08:12: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:08:12: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:08:12: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:08:18: 1000000 INFO @ Sat, 08 Sep 2018 12:08:19: 1000000 INFO @ Sat, 08 Sep 2018 12:08:19: 1000000 INFO @ Sat, 08 Sep 2018 12:08:25: 2000000 INFO @ Sat, 08 Sep 2018 12:08:25: 2000000 INFO @ Sat, 08 Sep 2018 12:08:25: 2000000 INFO @ Sat, 08 Sep 2018 12:08:31: 3000000 INFO @ Sat, 08 Sep 2018 12:08:32: 3000000 INFO @ Sat, 08 Sep 2018 12:08:32: 3000000 INFO @ Sat, 08 Sep 2018 12:08:37: 4000000 INFO @ Sat, 08 Sep 2018 12:08:39: 4000000 INFO @ Sat, 08 Sep 2018 12:08:39: 4000000 INFO @ Sat, 08 Sep 2018 12:08:43: 5000000 INFO @ Sat, 08 Sep 2018 12:08:45: 5000000 INFO @ Sat, 08 Sep 2018 12:08:45: 5000000 INFO @ Sat, 08 Sep 2018 12:08:50: 6000000 INFO @ Sat, 08 Sep 2018 12:08:52: 6000000 INFO @ Sat, 08 Sep 2018 12:08:52: 6000000 INFO @ Sat, 08 Sep 2018 12:08:56: 7000000 INFO @ Sat, 08 Sep 2018 12:08:59: 7000000 INFO @ Sat, 08 Sep 2018 12:08:59: 7000000 INFO @ Sat, 08 Sep 2018 12:09:02: 8000000 INFO @ Sat, 08 Sep 2018 12:09:05: 8000000 INFO @ Sat, 08 Sep 2018 12:09:05: 8000000 INFO @ Sat, 08 Sep 2018 12:09:08: 9000000 INFO @ Sat, 08 Sep 2018 12:09:12: 9000000 INFO @ Sat, 08 Sep 2018 12:09:12: 9000000 INFO @ Sat, 08 Sep 2018 12:09:14: 10000000 INFO @ Sat, 08 Sep 2018 12:09:18: 10000000 INFO @ Sat, 08 Sep 2018 12:09:18: 10000000 INFO @ Sat, 08 Sep 2018 12:09:21: 11000000 INFO @ Sat, 08 Sep 2018 12:09:25: 11000000 INFO @ Sat, 08 Sep 2018 12:09:25: 11000000 INFO @ Sat, 08 Sep 2018 12:09:27: 12000000 INFO @ Sat, 08 Sep 2018 12:09:31: 12000000 INFO @ Sat, 08 Sep 2018 12:09:31: 12000000 INFO @ Sat, 08 Sep 2018 12:09:33: 13000000 INFO @ Sat, 08 Sep 2018 12:09:38: 13000000 INFO @ Sat, 08 Sep 2018 12:09:38: 13000000 INFO @ Sat, 08 Sep 2018 12:09:39: 14000000 INFO @ Sat, 08 Sep 2018 12:09:45: 14000000 INFO @ Sat, 08 Sep 2018 12:09:45: 14000000 INFO @ Sat, 08 Sep 2018 12:09:46: 15000000 INFO @ Sat, 08 Sep 2018 12:09:51: 15000000 INFO @ Sat, 08 Sep 2018 12:09:51: 15000000 INFO @ Sat, 08 Sep 2018 12:09:52: 16000000 INFO @ Sat, 08 Sep 2018 12:09:58: 16000000 INFO @ Sat, 08 Sep 2018 12:09:58: 16000000 INFO @ Sat, 08 Sep 2018 12:09:58: 17000000 INFO @ Sat, 08 Sep 2018 12:10:04: 17000000 INFO @ Sat, 08 Sep 2018 12:10:04: 17000000 INFO @ Sat, 08 Sep 2018 12:10:04: 18000000 INFO @ Sat, 08 Sep 2018 12:10:10: 19000000 INFO @ Sat, 08 Sep 2018 12:10:11: 18000000 INFO @ Sat, 08 Sep 2018 12:10:11: 18000000 INFO @ Sat, 08 Sep 2018 12:10:17: 20000000 INFO @ Sat, 08 Sep 2018 12:10:17: 19000000 INFO @ Sat, 08 Sep 2018 12:10:17: 19000000 INFO @ Sat, 08 Sep 2018 12:10:23: 21000000 INFO @ Sat, 08 Sep 2018 12:10:24: 20000000 INFO @ Sat, 08 Sep 2018 12:10:24: 20000000 INFO @ Sat, 08 Sep 2018 12:10:29: 22000000 INFO @ Sat, 08 Sep 2018 12:10:31: 21000000 INFO @ Sat, 08 Sep 2018 12:10:31: 21000000 INFO @ Sat, 08 Sep 2018 12:10:35: 23000000 INFO @ Sat, 08 Sep 2018 12:10:37: 22000000 INFO @ Sat, 08 Sep 2018 12:10:37: 22000000 INFO @ Sat, 08 Sep 2018 12:10:42: 24000000 INFO @ Sat, 08 Sep 2018 12:10:44: 23000000 INFO @ Sat, 08 Sep 2018 12:10:44: 23000000 INFO @ Sat, 08 Sep 2018 12:10:48: 25000000 INFO @ Sat, 08 Sep 2018 12:10:50: 24000000 INFO @ Sat, 08 Sep 2018 12:10:50: 24000000 INFO @ Sat, 08 Sep 2018 12:10:54: 26000000 INFO @ Sat, 08 Sep 2018 12:10:57: 25000000 INFO @ Sat, 08 Sep 2018 12:10:57: 25000000 INFO @ Sat, 08 Sep 2018 12:11:00: 27000000 INFO @ Sat, 08 Sep 2018 12:11:04: 26000000 INFO @ Sat, 08 Sep 2018 12:11:04: 26000000 INFO @ Sat, 08 Sep 2018 12:11:06: 28000000 INFO @ Sat, 08 Sep 2018 12:11:10: 27000000 INFO @ Sat, 08 Sep 2018 12:11:10: 27000000 INFO @ Sat, 08 Sep 2018 12:11:13: 29000000 INFO @ Sat, 08 Sep 2018 12:11:17: 28000000 INFO @ Sat, 08 Sep 2018 12:11:17: 28000000 INFO @ Sat, 08 Sep 2018 12:11:19: 30000000 INFO @ Sat, 08 Sep 2018 12:11:24: 29000000 INFO @ Sat, 08 Sep 2018 12:11:24: 29000000 INFO @ Sat, 08 Sep 2018 12:11:25: 31000000 INFO @ Sat, 08 Sep 2018 12:11:30: 30000000 INFO @ Sat, 08 Sep 2018 12:11:30: 30000000 INFO @ Sat, 08 Sep 2018 12:11:31: 32000000 INFO @ Sat, 08 Sep 2018 12:11:37: 31000000 INFO @ Sat, 08 Sep 2018 12:11:37: 31000000 INFO @ Sat, 08 Sep 2018 12:11:37: 33000000 INFO @ Sat, 08 Sep 2018 12:11:44: 32000000 INFO @ Sat, 08 Sep 2018 12:11:44: 32000000 INFO @ Sat, 08 Sep 2018 12:11:44: 34000000 INFO @ Sat, 08 Sep 2018 12:11:50: 35000000 INFO @ Sat, 08 Sep 2018 12:11:50: 33000000 INFO @ Sat, 08 Sep 2018 12:11:50: 33000000 INFO @ Sat, 08 Sep 2018 12:11:56: 36000000 INFO @ Sat, 08 Sep 2018 12:11:57: 34000000 INFO @ Sat, 08 Sep 2018 12:11:57: 34000000 INFO @ Sat, 08 Sep 2018 12:12:02: 37000000 INFO @ Sat, 08 Sep 2018 12:12:03: 35000000 INFO @ Sat, 08 Sep 2018 12:12:03: 35000000 INFO @ Sat, 08 Sep 2018 12:12:08: 38000000 INFO @ Sat, 08 Sep 2018 12:12:10: 36000000 INFO @ Sat, 08 Sep 2018 12:12:10: 36000000 INFO @ Sat, 08 Sep 2018 12:12:14: 39000000 INFO @ Sat, 08 Sep 2018 12:12:16: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:12:16: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:12:16: #1 total tags in treatment: 39183711 INFO @ Sat, 08 Sep 2018 12:12:16: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:12:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:12:17: 37000000 INFO @ Sat, 08 Sep 2018 12:12:17: 37000000 INFO @ Sat, 08 Sep 2018 12:12:17: #1 tags after filtering in treatment: 39183711 INFO @ Sat, 08 Sep 2018 12:12:17: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:12:17: #1 finished! INFO @ Sat, 08 Sep 2018 12:12:17: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:12:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:12:19: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:12:19: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:12:19: Process for pairing-model is terminated! cat: SRX2965739.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965739.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965739.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965739.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:12:23: 38000000 INFO @ Sat, 08 Sep 2018 12:12:23: 38000000 INFO @ Sat, 08 Sep 2018 12:12:30: 39000000 INFO @ Sat, 08 Sep 2018 12:12:30: 39000000 INFO @ Sat, 08 Sep 2018 12:12:31: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:12:31: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:12:31: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:12:31: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:12:31: #1 total tags in treatment: 39183711 INFO @ Sat, 08 Sep 2018 12:12:31: #1 total tags in treatment: 39183711 INFO @ Sat, 08 Sep 2018 12:12:31: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:12:31: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:12:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:12:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:12:32: #1 tags after filtering in treatment: 39183711 INFO @ Sat, 08 Sep 2018 12:12:32: #1 tags after filtering in treatment: 39183711 INFO @ Sat, 08 Sep 2018 12:12:32: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:12:32: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:12:32: #1 finished! INFO @ Sat, 08 Sep 2018 12:12:32: #1 finished! INFO @ Sat, 08 Sep 2018 12:12:32: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:12:32: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:12:32: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:12:32: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:12:35: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:12:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:12:35: Process for pairing-model is terminated! INFO @ Sat, 08 Sep 2018 12:12:35: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:12:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:12:35: Process for pairing-model is terminated! cat: SRX2965739.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX2965739.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965739.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965739.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965739.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965739.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965739.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965739.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。