Job ID = 9157383 sra ファイルのダウンロード中... Completed: 4693694K bytes transferred in 39 seconds (968818K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 104108339 spots for /home/okishinya/chipatlas/results/ce10/SRX1674099/SRR3320145.sra Written 104108339 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:52:54 104108339 reads; of these: 104108339 (100.00%) were unpaired; of these: 4861187 (4.67%) aligned 0 times 88148206 (84.67%) aligned exactly 1 time 11098946 (10.66%) aligned >1 times 95.33% overall alignment rate Time searching: 00:52:54 Overall time: 00:52:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 51840201 / 99247152 = 0.5223 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 13:07:02: # Command line: callpeak -t SRX1674099.bam -f BAM -g ce -n SRX1674099.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1674099.10 # format = BAM # ChIP-seq file = ['SRX1674099.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 13:07:02: #1 read tag files... INFO @ Tue, 27 Jun 2017 13:07:02: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 13:07:02: # Command line: callpeak -t SRX1674099.bam -f BAM -g ce -n SRX1674099.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1674099.20 # format = BAM # ChIP-seq file = ['SRX1674099.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 13:07:02: #1 read tag files... INFO @ Tue, 27 Jun 2017 13:07:02: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 13:07:02: # Command line: callpeak -t SRX1674099.bam -f BAM -g ce -n SRX1674099.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1674099.05 # format = BAM # ChIP-seq file = ['SRX1674099.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 13:07:02: #1 read tag files... INFO @ Tue, 27 Jun 2017 13:07:02: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 13:07:11: 1000000 INFO @ Tue, 27 Jun 2017 13:07:12: 1000000 INFO @ Tue, 27 Jun 2017 13:07:12: 1000000 INFO @ Tue, 27 Jun 2017 13:07:20: 2000000 INFO @ Tue, 27 Jun 2017 13:07:22: 2000000 INFO @ Tue, 27 Jun 2017 13:07:22: 2000000 INFO @ Tue, 27 Jun 2017 13:07:29: 3000000 INFO @ Tue, 27 Jun 2017 13:07:31: 3000000 INFO @ Tue, 27 Jun 2017 13:07:31: 3000000 INFO @ Tue, 27 Jun 2017 13:07:38: 4000000 INFO @ Tue, 27 Jun 2017 13:07:41: 4000000 INFO @ Tue, 27 Jun 2017 13:07:41: 4000000 INFO @ Tue, 27 Jun 2017 13:07:46: 5000000 INFO @ Tue, 27 Jun 2017 13:07:51: 5000000 INFO @ Tue, 27 Jun 2017 13:07:51: 5000000 INFO @ Tue, 27 Jun 2017 13:07:55: 6000000 INFO @ Tue, 27 Jun 2017 13:08:00: 6000000 INFO @ Tue, 27 Jun 2017 13:08:00: 6000000 INFO @ Tue, 27 Jun 2017 13:08:04: 7000000 INFO @ Tue, 27 Jun 2017 13:08:10: 7000000 INFO @ Tue, 27 Jun 2017 13:08:10: 7000000 INFO @ Tue, 27 Jun 2017 13:08:13: 8000000 INFO @ Tue, 27 Jun 2017 13:08:20: 8000000 INFO @ Tue, 27 Jun 2017 13:08:20: 8000000 INFO @ Tue, 27 Jun 2017 13:08:22: 9000000 INFO @ Tue, 27 Jun 2017 13:08:29: 9000000 INFO @ Tue, 27 Jun 2017 13:08:29: 9000000 INFO @ Tue, 27 Jun 2017 13:08:31: 10000000 INFO @ Tue, 27 Jun 2017 13:08:39: 10000000 INFO @ Tue, 27 Jun 2017 13:08:39: 10000000 INFO @ Tue, 27 Jun 2017 13:08:40: 11000000 INFO @ Tue, 27 Jun 2017 13:08:48: 11000000 INFO @ Tue, 27 Jun 2017 13:08:48: 11000000 INFO @ Tue, 27 Jun 2017 13:08:49: 12000000 INFO @ Tue, 27 Jun 2017 13:08:57: 12000000 INFO @ Tue, 27 Jun 2017 13:08:57: 12000000 INFO @ Tue, 27 Jun 2017 13:08:58: 13000000 INFO @ Tue, 27 Jun 2017 13:09:05: 13000000 INFO @ Tue, 27 Jun 2017 13:09:05: 13000000 INFO @ Tue, 27 Jun 2017 13:09:07: 14000000 INFO @ Tue, 27 Jun 2017 13:09:14: 14000000 INFO @ Tue, 27 Jun 2017 13:09:14: 14000000 INFO @ Tue, 27 Jun 2017 13:09:16: 15000000 INFO @ Tue, 27 Jun 2017 13:09:23: 15000000 INFO @ Tue, 27 Jun 2017 13:09:23: 15000000 INFO @ Tue, 27 Jun 2017 13:09:25: 16000000 INFO @ Tue, 27 Jun 2017 13:09:32: 16000000 INFO @ Tue, 27 Jun 2017 13:09:32: 16000000 INFO @ Tue, 27 Jun 2017 13:09:34: 17000000 INFO @ Tue, 27 Jun 2017 13:09:41: 17000000 INFO @ Tue, 27 Jun 2017 13:09:41: 17000000 INFO @ Tue, 27 Jun 2017 13:09:43: 18000000 INFO @ Tue, 27 Jun 2017 13:09:49: 18000000 INFO @ Tue, 27 Jun 2017 13:09:49: 18000000 INFO @ Tue, 27 Jun 2017 13:09:52: 19000000 INFO @ Tue, 27 Jun 2017 13:09:58: 19000000 INFO @ Tue, 27 Jun 2017 13:09:58: 19000000 INFO @ Tue, 27 Jun 2017 13:10:01: 20000000 INFO @ Tue, 27 Jun 2017 13:10:07: 20000000 INFO @ Tue, 27 Jun 2017 13:10:07: 20000000 INFO @ Tue, 27 Jun 2017 13:10:10: 21000000 INFO @ Tue, 27 Jun 2017 13:10:16: 21000000 INFO @ Tue, 27 Jun 2017 13:10:16: 21000000 INFO @ Tue, 27 Jun 2017 13:10:19: 22000000 INFO @ Tue, 27 Jun 2017 13:10:24: 22000000 INFO @ Tue, 27 Jun 2017 13:10:24: 22000000 INFO @ Tue, 27 Jun 2017 13:10:28: 23000000 INFO @ Tue, 27 Jun 2017 13:10:33: 23000000 INFO @ Tue, 27 Jun 2017 13:10:33: 23000000 INFO @ Tue, 27 Jun 2017 13:10:38: 24000000 INFO @ Tue, 27 Jun 2017 13:10:42: 24000000 INFO @ Tue, 27 Jun 2017 13:10:42: 24000000 INFO @ Tue, 27 Jun 2017 13:10:47: 25000000 INFO @ Tue, 27 Jun 2017 13:10:51: 25000000 INFO @ Tue, 27 Jun 2017 13:10:51: 25000000 INFO @ Tue, 27 Jun 2017 13:10:56: 26000000 INFO @ Tue, 27 Jun 2017 13:11:00: 26000000 INFO @ Tue, 27 Jun 2017 13:11:00: 26000000 INFO @ Tue, 27 Jun 2017 13:11:05: 27000000 INFO @ Tue, 27 Jun 2017 13:11:10: 27000000 INFO @ Tue, 27 Jun 2017 13:11:10: 27000000 INFO @ Tue, 27 Jun 2017 13:11:14: 28000000 INFO @ Tue, 27 Jun 2017 13:11:19: 28000000 INFO @ Tue, 27 Jun 2017 13:11:19: 28000000 INFO @ Tue, 27 Jun 2017 13:11:23: 29000000 INFO @ Tue, 27 Jun 2017 13:11:28: 29000000 INFO @ Tue, 27 Jun 2017 13:11:28: 29000000 INFO @ Tue, 27 Jun 2017 13:11:32: 30000000 INFO @ Tue, 27 Jun 2017 13:11:37: 30000000 INFO @ Tue, 27 Jun 2017 13:11:37: 30000000 INFO @ Tue, 27 Jun 2017 13:11:41: 31000000 INFO @ Tue, 27 Jun 2017 13:11:47: 31000000 INFO @ Tue, 27 Jun 2017 13:11:47: 31000000 INFO @ Tue, 27 Jun 2017 13:11:50: 32000000 INFO @ Tue, 27 Jun 2017 13:11:57: 32000000 INFO @ Tue, 27 Jun 2017 13:11:57: 32000000 INFO @ Tue, 27 Jun 2017 13:11:59: 33000000 INFO @ Tue, 27 Jun 2017 13:12:07: 33000000 INFO @ Tue, 27 Jun 2017 13:12:07: 33000000 INFO @ Tue, 27 Jun 2017 13:12:08: 34000000 INFO @ Tue, 27 Jun 2017 13:12:16: 35000000 INFO @ Tue, 27 Jun 2017 13:12:16: 34000000 INFO @ Tue, 27 Jun 2017 13:12:16: 34000000 INFO @ Tue, 27 Jun 2017 13:12:25: 36000000 INFO @ Tue, 27 Jun 2017 13:12:26: 35000000 INFO @ Tue, 27 Jun 2017 13:12:26: 35000000 INFO @ Tue, 27 Jun 2017 13:12:34: 37000000 INFO @ Tue, 27 Jun 2017 13:12:35: 36000000 INFO @ Tue, 27 Jun 2017 13:12:35: 36000000 INFO @ Tue, 27 Jun 2017 13:12:43: 38000000 INFO @ Tue, 27 Jun 2017 13:12:44: 37000000 INFO @ Tue, 27 Jun 2017 13:12:44: 37000000 INFO @ Tue, 27 Jun 2017 13:12:51: 39000000 INFO @ Tue, 27 Jun 2017 13:12:54: 38000000 INFO @ Tue, 27 Jun 2017 13:12:54: 38000000 INFO @ Tue, 27 Jun 2017 13:13:00: 40000000 INFO @ Tue, 27 Jun 2017 13:13:03: 39000000 INFO @ Tue, 27 Jun 2017 13:13:03: 39000000 INFO @ Tue, 27 Jun 2017 13:13:09: 41000000 INFO @ Tue, 27 Jun 2017 13:13:12: 40000000 INFO @ Tue, 27 Jun 2017 13:13:12: 40000000 INFO @ Tue, 27 Jun 2017 13:13:17: 42000000 INFO @ Tue, 27 Jun 2017 13:13:22: 41000000 INFO @ Tue, 27 Jun 2017 13:13:22: 41000000 INFO @ Tue, 27 Jun 2017 13:13:26: 43000000 INFO @ Tue, 27 Jun 2017 13:13:30: 42000000 INFO @ Tue, 27 Jun 2017 13:13:30: 42000000 INFO @ Tue, 27 Jun 2017 13:13:35: 44000000 INFO @ Tue, 27 Jun 2017 13:13:40: 43000000 INFO @ Tue, 27 Jun 2017 13:13:40: 43000000 INFO @ Tue, 27 Jun 2017 13:13:44: 45000000 INFO @ Tue, 27 Jun 2017 13:13:50: 44000000 INFO @ Tue, 27 Jun 2017 13:13:50: 44000000 INFO @ Tue, 27 Jun 2017 13:13:52: 46000000 INFO @ Tue, 27 Jun 2017 13:14:00: 45000000 INFO @ Tue, 27 Jun 2017 13:14:00: 45000000 INFO @ Tue, 27 Jun 2017 13:14:01: 47000000 INFO @ Tue, 27 Jun 2017 13:14:05: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:14:05: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:14:05: #1 total tags in treatment: 47406951 INFO @ Tue, 27 Jun 2017 13:14:05: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:14:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:14:06: #1 tags after filtering in treatment: 47406951 INFO @ Tue, 27 Jun 2017 13:14:06: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:14:06: #1 finished! INFO @ Tue, 27 Jun 2017 13:14:06: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:14:06: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:14:09: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:14:09: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:14:09: Process for pairing-model is terminated! cat: SRX1674099.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674099.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674099.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674099.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 13:14:09: 46000000 INFO @ Tue, 27 Jun 2017 13:14:09: 46000000 INFO @ Tue, 27 Jun 2017 13:14:19: 47000000 INFO @ Tue, 27 Jun 2017 13:14:19: 47000000 INFO @ Tue, 27 Jun 2017 13:14:23: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:14:23: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:14:23: #1 total tags in treatment: 47406951 INFO @ Tue, 27 Jun 2017 13:14:23: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:14:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:14:23: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:14:23: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:14:23: #1 total tags in treatment: 47406951 INFO @ Tue, 27 Jun 2017 13:14:23: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:14:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:14:24: #1 tags after filtering in treatment: 47406951 INFO @ Tue, 27 Jun 2017 13:14:24: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:14:24: #1 finished! INFO @ Tue, 27 Jun 2017 13:14:24: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:14:24: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:14:24: #1 tags after filtering in treatment: 47406951 INFO @ Tue, 27 Jun 2017 13:14:24: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:14:24: #1 finished! INFO @ Tue, 27 Jun 2017 13:14:24: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:14:24: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:14:27: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:14:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:14:27: Process for pairing-model is terminated! cat: SRX1674099.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません INFO @ Tue, 27 Jun 2017 13:14:27: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:14:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:14:27: Process for pairing-model is terminated! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674099.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674099.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674099.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling cat: SRX1674099.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674099.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674099.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674099.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。