Job ID = 16434929 SRX = SRX11633398 Genome = ce10 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 63145710 spots for SRR15329106/SRR15329106.sra Written 63145710 spots for SRR15329106/SRR15329106.sra fastq に変換しました。 bowtie でマッピング中... Your job 16435530 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:22:31 63145710 reads; of these: 63145710 (100.00%) were unpaired; of these: 5256745 (8.32%) aligned 0 times 49856687 (78.95%) aligned exactly 1 time 8032278 (12.72%) aligned >1 times 91.68% overall alignment rate Time searching: 00:22:31 Overall time: 00:22:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 9936805 / 57888965 = 0.1717 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 11:14:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 11:14:58: #1 read tag files... INFO @ Tue, 02 Aug 2022 11:14:58: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 11:15:06: 1000000 INFO @ Tue, 02 Aug 2022 11:15:13: 2000000 INFO @ Tue, 02 Aug 2022 11:15:21: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 11:15:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 11:15:27: #1 read tag files... INFO @ Tue, 02 Aug 2022 11:15:27: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 11:15:28: 4000000 INFO @ Tue, 02 Aug 2022 11:15:36: 1000000 INFO @ Tue, 02 Aug 2022 11:15:37: 5000000 INFO @ Tue, 02 Aug 2022 11:15:45: 2000000 INFO @ Tue, 02 Aug 2022 11:15:45: 6000000 INFO @ Tue, 02 Aug 2022 11:15:54: 3000000 INFO @ Tue, 02 Aug 2022 11:15:54: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 11:15:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 11:15:57: #1 read tag files... INFO @ Tue, 02 Aug 2022 11:15:57: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 11:16:03: 8000000 INFO @ Tue, 02 Aug 2022 11:16:03: 4000000 INFO @ Tue, 02 Aug 2022 11:16:07: 1000000 INFO @ Tue, 02 Aug 2022 11:16:11: 9000000 INFO @ Tue, 02 Aug 2022 11:16:13: 5000000 INFO @ Tue, 02 Aug 2022 11:16:17: 2000000 INFO @ Tue, 02 Aug 2022 11:16:20: 10000000 INFO @ Tue, 02 Aug 2022 11:16:22: 6000000 INFO @ Tue, 02 Aug 2022 11:16:27: 3000000 INFO @ Tue, 02 Aug 2022 11:16:28: 11000000 INFO @ Tue, 02 Aug 2022 11:16:32: 7000000 INFO @ Tue, 02 Aug 2022 11:16:36: 4000000 INFO @ Tue, 02 Aug 2022 11:16:36: 12000000 INFO @ Tue, 02 Aug 2022 11:16:41: 8000000 INFO @ Tue, 02 Aug 2022 11:16:44: 13000000 INFO @ Tue, 02 Aug 2022 11:16:46: 5000000 INFO @ Tue, 02 Aug 2022 11:16:50: 9000000 INFO @ Tue, 02 Aug 2022 11:16:53: 14000000 INFO @ Tue, 02 Aug 2022 11:16:56: 6000000 INFO @ Tue, 02 Aug 2022 11:17:00: 10000000 INFO @ Tue, 02 Aug 2022 11:17:01: 15000000 INFO @ Tue, 02 Aug 2022 11:17:05: 7000000 INFO @ Tue, 02 Aug 2022 11:17:09: 16000000 INFO @ Tue, 02 Aug 2022 11:17:10: 11000000 INFO @ Tue, 02 Aug 2022 11:17:15: 8000000 INFO @ Tue, 02 Aug 2022 11:17:18: 17000000 INFO @ Tue, 02 Aug 2022 11:17:19: 12000000 INFO @ Tue, 02 Aug 2022 11:17:25: 9000000 INFO @ Tue, 02 Aug 2022 11:17:26: 18000000 INFO @ Tue, 02 Aug 2022 11:17:28: 13000000 INFO @ Tue, 02 Aug 2022 11:17:34: 19000000 INFO @ Tue, 02 Aug 2022 11:17:34: 10000000 INFO @ Tue, 02 Aug 2022 11:17:37: 14000000 INFO @ Tue, 02 Aug 2022 11:17:42: 20000000 INFO @ Tue, 02 Aug 2022 11:17:44: 11000000 INFO @ Tue, 02 Aug 2022 11:17:47: 15000000 INFO @ Tue, 02 Aug 2022 11:17:50: 21000000 INFO @ Tue, 02 Aug 2022 11:17:53: 12000000 INFO @ Tue, 02 Aug 2022 11:17:56: 16000000 INFO @ Tue, 02 Aug 2022 11:17:58: 22000000 INFO @ Tue, 02 Aug 2022 11:18:03: 13000000 INFO @ Tue, 02 Aug 2022 11:18:05: 17000000 INFO @ Tue, 02 Aug 2022 11:18:06: 23000000 INFO @ Tue, 02 Aug 2022 11:18:12: 14000000 INFO @ Tue, 02 Aug 2022 11:18:14: 24000000 INFO @ Tue, 02 Aug 2022 11:18:15: 18000000 INFO @ Tue, 02 Aug 2022 11:18:22: 25000000 INFO @ Tue, 02 Aug 2022 11:18:22: 15000000 INFO @ Tue, 02 Aug 2022 11:18:25: 19000000 INFO @ Tue, 02 Aug 2022 11:18:30: 26000000 INFO @ Tue, 02 Aug 2022 11:18:32: 16000000 INFO @ Tue, 02 Aug 2022 11:18:35: 20000000 INFO @ Tue, 02 Aug 2022 11:18:37: 27000000 INFO @ Tue, 02 Aug 2022 11:18:42: 17000000 INFO @ Tue, 02 Aug 2022 11:18:44: 21000000 INFO @ Tue, 02 Aug 2022 11:18:45: 28000000 INFO @ Tue, 02 Aug 2022 11:18:52: 18000000 INFO @ Tue, 02 Aug 2022 11:18:53: 29000000 INFO @ Tue, 02 Aug 2022 11:18:54: 22000000 INFO @ Tue, 02 Aug 2022 11:19:01: 30000000 INFO @ Tue, 02 Aug 2022 11:19:02: 19000000 INFO @ Tue, 02 Aug 2022 11:19:04: 23000000 INFO @ Tue, 02 Aug 2022 11:19:09: 31000000 INFO @ Tue, 02 Aug 2022 11:19:12: 20000000 INFO @ Tue, 02 Aug 2022 11:19:14: 24000000 INFO @ Tue, 02 Aug 2022 11:19:17: 32000000 INFO @ Tue, 02 Aug 2022 11:19:21: 21000000 INFO @ Tue, 02 Aug 2022 11:19:23: 25000000 INFO @ Tue, 02 Aug 2022 11:19:25: 33000000 INFO @ Tue, 02 Aug 2022 11:19:31: 22000000 INFO @ Tue, 02 Aug 2022 11:19:33: 34000000 INFO @ Tue, 02 Aug 2022 11:19:33: 26000000 INFO @ Tue, 02 Aug 2022 11:19:41: 35000000 INFO @ Tue, 02 Aug 2022 11:19:41: 23000000 INFO @ Tue, 02 Aug 2022 11:19:42: 27000000 INFO @ Tue, 02 Aug 2022 11:19:48: 36000000 INFO @ Tue, 02 Aug 2022 11:19:51: 24000000 INFO @ Tue, 02 Aug 2022 11:19:52: 28000000 INFO @ Tue, 02 Aug 2022 11:19:56: 37000000 INFO @ Tue, 02 Aug 2022 11:20:00: 25000000 INFO @ Tue, 02 Aug 2022 11:20:02: 29000000 INFO @ Tue, 02 Aug 2022 11:20:04: 38000000 INFO @ Tue, 02 Aug 2022 11:20:10: 26000000 INFO @ Tue, 02 Aug 2022 11:20:11: 30000000 INFO @ Tue, 02 Aug 2022 11:20:12: 39000000 INFO @ Tue, 02 Aug 2022 11:20:19: 27000000 INFO @ Tue, 02 Aug 2022 11:20:20: 40000000 INFO @ Tue, 02 Aug 2022 11:20:21: 31000000 INFO @ Tue, 02 Aug 2022 11:20:28: 28000000 INFO @ Tue, 02 Aug 2022 11:20:29: 41000000 INFO @ Tue, 02 Aug 2022 11:20:30: 32000000 INFO @ Tue, 02 Aug 2022 11:20:37: 42000000 INFO @ Tue, 02 Aug 2022 11:20:37: 29000000 INFO @ Tue, 02 Aug 2022 11:20:40: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 11:20:45: 43000000 INFO @ Tue, 02 Aug 2022 11:20:46: 30000000 INFO @ Tue, 02 Aug 2022 11:20:50: 34000000 INFO @ Tue, 02 Aug 2022 11:20:53: 44000000 INFO @ Tue, 02 Aug 2022 11:20:56: 31000000 INFO @ Tue, 02 Aug 2022 11:21:01: 35000000 INFO @ Tue, 02 Aug 2022 11:21:01: 45000000 INFO @ Tue, 02 Aug 2022 11:21:06: 32000000 INFO @ Tue, 02 Aug 2022 11:21:10: 46000000 INFO @ Tue, 02 Aug 2022 11:21:11: 36000000 INFO @ Tue, 02 Aug 2022 11:21:16: 33000000 INFO @ Tue, 02 Aug 2022 11:21:19: 47000000 INFO @ Tue, 02 Aug 2022 11:21:22: 37000000 INFO @ Tue, 02 Aug 2022 11:21:25: 34000000 INFO @ Tue, 02 Aug 2022 11:21:27: #1 tag size is determined as 74 bps INFO @ Tue, 02 Aug 2022 11:21:27: #1 tag size = 74 INFO @ Tue, 02 Aug 2022 11:21:27: #1 total tags in treatment: 47952160 INFO @ Tue, 02 Aug 2022 11:21:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 11:21:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 11:21:28: #1 tags after filtering in treatment: 47952160 INFO @ Tue, 02 Aug 2022 11:21:28: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 02 Aug 2022 11:21:28: #1 finished! INFO @ Tue, 02 Aug 2022 11:21:28: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 11:21:28: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 11:21:31: #2 number of paired peaks: 0 WARNING @ Tue, 02 Aug 2022 11:21:31: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 02 Aug 2022 11:21:31: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 11:21:33: 38000000 INFO @ Tue, 02 Aug 2022 11:21:35: 35000000 INFO @ Tue, 02 Aug 2022 11:21:43: 39000000 INFO @ Tue, 02 Aug 2022 11:21:44: 36000000 INFO @ Tue, 02 Aug 2022 11:21:53: 37000000 INFO @ Tue, 02 Aug 2022 11:21:53: 40000000 INFO @ Tue, 02 Aug 2022 11:22:03: 38000000 INFO @ Tue, 02 Aug 2022 11:22:04: 41000000 INFO @ Tue, 02 Aug 2022 11:22:13: 39000000 INFO @ Tue, 02 Aug 2022 11:22:15: 42000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 11:22:22: 40000000 INFO @ Tue, 02 Aug 2022 11:22:25: 43000000 INFO @ Tue, 02 Aug 2022 11:22:32: 41000000 INFO @ Tue, 02 Aug 2022 11:22:35: 44000000 INFO @ Tue, 02 Aug 2022 11:22:42: 42000000 INFO @ Tue, 02 Aug 2022 11:22:44: 45000000 INFO @ Tue, 02 Aug 2022 11:22:51: 43000000 INFO @ Tue, 02 Aug 2022 11:22:54: 46000000 INFO @ Tue, 02 Aug 2022 11:23:01: 44000000 INFO @ Tue, 02 Aug 2022 11:23:03: 47000000 INFO @ Tue, 02 Aug 2022 11:23:10: 45000000 INFO @ Tue, 02 Aug 2022 11:23:13: #1 tag size is determined as 74 bps INFO @ Tue, 02 Aug 2022 11:23:13: #1 tag size = 74 INFO @ Tue, 02 Aug 2022 11:23:13: #1 total tags in treatment: 47952160 INFO @ Tue, 02 Aug 2022 11:23:13: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 11:23:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 11:23:13: #1 tags after filtering in treatment: 47952160 INFO @ Tue, 02 Aug 2022 11:23:13: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 02 Aug 2022 11:23:13: #1 finished! INFO @ Tue, 02 Aug 2022 11:23:13: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 11:23:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 11:23:16: #2 number of paired peaks: 0 WARNING @ Tue, 02 Aug 2022 11:23:16: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 02 Aug 2022 11:23:16: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 11:23:20: 46000000 INFO @ Tue, 02 Aug 2022 11:23:29: 47000000 INFO @ Tue, 02 Aug 2022 11:23:38: #1 tag size is determined as 74 bps INFO @ Tue, 02 Aug 2022 11:23:38: #1 tag size = 74 INFO @ Tue, 02 Aug 2022 11:23:38: #1 total tags in treatment: 47952160 INFO @ Tue, 02 Aug 2022 11:23:38: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 11:23:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 11:23:39: #1 tags after filtering in treatment: 47952160 INFO @ Tue, 02 Aug 2022 11:23:39: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 02 Aug 2022 11:23:39: #1 finished! INFO @ Tue, 02 Aug 2022 11:23:39: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 11:23:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 11:23:42: #2 number of paired peaks: 0 WARNING @ Tue, 02 Aug 2022 11:23:42: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 02 Aug 2022 11:23:42: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX11633398/SRX11633398.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling