Job ID = 14158156 SRX = SRX10342575 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 16887941 spots for SRR13964606/SRR13964606.sra Written 16887941 spots for SRR13964606/SRR13964606.sra Read 16964260 spots for SRR13964607/SRR13964607.sra Written 16964260 spots for SRR13964607/SRR13964607.sra fastq に変換しました。 bowtie でマッピング中... Your job 14158765 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:47:59 33852201 reads; of these: 33852201 (100.00%) were paired; of these: 6005569 (17.74%) aligned concordantly 0 times 17601969 (52.00%) aligned concordantly exactly 1 time 10244663 (30.26%) aligned concordantly >1 times ---- 6005569 pairs aligned concordantly 0 times; of these: 1963472 (32.69%) aligned discordantly 1 time ---- 4042097 pairs aligned 0 times concordantly or discordantly; of these: 8084194 mates make up the pairs; of these: 4671461 (57.79%) aligned 0 times 1485239 (18.37%) aligned exactly 1 time 1927494 (23.84%) aligned >1 times 93.10% overall alignment rate Time searching: 00:47:59 Overall time: 00:47:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 6923281 / 29534955 = 0.2344 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:36:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:36:27: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:36:27: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:36:32: 1000000 INFO @ Wed, 08 Dec 2021 15:36:37: 2000000 INFO @ Wed, 08 Dec 2021 15:36:41: 3000000 INFO @ Wed, 08 Dec 2021 15:36:46: 4000000 INFO @ Wed, 08 Dec 2021 15:36:51: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:36:55: 6000000 INFO @ Wed, 08 Dec 2021 15:36:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:36:57: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:36:57: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:37:00: 7000000 INFO @ Wed, 08 Dec 2021 15:37:02: 1000000 INFO @ Wed, 08 Dec 2021 15:37:06: 8000000 INFO @ Wed, 08 Dec 2021 15:37:08: 2000000 INFO @ Wed, 08 Dec 2021 15:37:11: 9000000 INFO @ Wed, 08 Dec 2021 15:37:13: 3000000 INFO @ Wed, 08 Dec 2021 15:37:16: 10000000 INFO @ Wed, 08 Dec 2021 15:37:18: 4000000 INFO @ Wed, 08 Dec 2021 15:37:21: 11000000 INFO @ Wed, 08 Dec 2021 15:37:23: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:37:26: 12000000 INFO @ Wed, 08 Dec 2021 15:37:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:37:27: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:37:27: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:37:29: 6000000 INFO @ Wed, 08 Dec 2021 15:37:32: 13000000 INFO @ Wed, 08 Dec 2021 15:37:33: 1000000 INFO @ Wed, 08 Dec 2021 15:37:34: 7000000 INFO @ Wed, 08 Dec 2021 15:37:38: 14000000 INFO @ Wed, 08 Dec 2021 15:37:39: 2000000 INFO @ Wed, 08 Dec 2021 15:37:40: 8000000 INFO @ Wed, 08 Dec 2021 15:37:43: 15000000 INFO @ Wed, 08 Dec 2021 15:37:46: 3000000 INFO @ Wed, 08 Dec 2021 15:37:46: 9000000 INFO @ Wed, 08 Dec 2021 15:37:49: 16000000 INFO @ Wed, 08 Dec 2021 15:37:51: 10000000 INFO @ Wed, 08 Dec 2021 15:37:52: 4000000 INFO @ Wed, 08 Dec 2021 15:37:54: 17000000 INFO @ Wed, 08 Dec 2021 15:37:57: 11000000 INFO @ Wed, 08 Dec 2021 15:37:58: 5000000 INFO @ Wed, 08 Dec 2021 15:38:00: 18000000 INFO @ Wed, 08 Dec 2021 15:38:03: 12000000 INFO @ Wed, 08 Dec 2021 15:38:04: 6000000 INFO @ Wed, 08 Dec 2021 15:38:06: 19000000 INFO @ Wed, 08 Dec 2021 15:38:08: 13000000 INFO @ Wed, 08 Dec 2021 15:38:10: 7000000 INFO @ Wed, 08 Dec 2021 15:38:11: 20000000 INFO @ Wed, 08 Dec 2021 15:38:14: 14000000 INFO @ Wed, 08 Dec 2021 15:38:16: 8000000 INFO @ Wed, 08 Dec 2021 15:38:17: 21000000 INFO @ Wed, 08 Dec 2021 15:38:20: 15000000 INFO @ Wed, 08 Dec 2021 15:38:22: 9000000 INFO @ Wed, 08 Dec 2021 15:38:23: 22000000 INFO @ Wed, 08 Dec 2021 15:38:25: 16000000 INFO @ Wed, 08 Dec 2021 15:38:28: 10000000 INFO @ Wed, 08 Dec 2021 15:38:28: 23000000 INFO @ Wed, 08 Dec 2021 15:38:31: 17000000 INFO @ Wed, 08 Dec 2021 15:38:34: 24000000 INFO @ Wed, 08 Dec 2021 15:38:34: 11000000 INFO @ Wed, 08 Dec 2021 15:38:36: 18000000 INFO @ Wed, 08 Dec 2021 15:38:40: 25000000 INFO @ Wed, 08 Dec 2021 15:38:41: 12000000 INFO @ Wed, 08 Dec 2021 15:38:42: 19000000 INFO @ Wed, 08 Dec 2021 15:38:45: 26000000 INFO @ Wed, 08 Dec 2021 15:38:47: 13000000 INFO @ Wed, 08 Dec 2021 15:38:48: 20000000 INFO @ Wed, 08 Dec 2021 15:38:51: 27000000 INFO @ Wed, 08 Dec 2021 15:38:53: 14000000 INFO @ Wed, 08 Dec 2021 15:38:53: 21000000 INFO @ Wed, 08 Dec 2021 15:38:56: 28000000 INFO @ Wed, 08 Dec 2021 15:38:59: 22000000 INFO @ Wed, 08 Dec 2021 15:38:59: 15000000 INFO @ Wed, 08 Dec 2021 15:39:02: 29000000 INFO @ Wed, 08 Dec 2021 15:39:04: 23000000 INFO @ Wed, 08 Dec 2021 15:39:05: 16000000 INFO @ Wed, 08 Dec 2021 15:39:08: 30000000 INFO @ Wed, 08 Dec 2021 15:39:10: 24000000 INFO @ Wed, 08 Dec 2021 15:39:11: 17000000 INFO @ Wed, 08 Dec 2021 15:39:13: 31000000 INFO @ Wed, 08 Dec 2021 15:39:15: 25000000 INFO @ Wed, 08 Dec 2021 15:39:18: 18000000 INFO @ Wed, 08 Dec 2021 15:39:19: 32000000 INFO @ Wed, 08 Dec 2021 15:39:21: 26000000 INFO @ Wed, 08 Dec 2021 15:39:24: 19000000 INFO @ Wed, 08 Dec 2021 15:39:24: 33000000 INFO @ Wed, 08 Dec 2021 15:39:27: 27000000 INFO @ Wed, 08 Dec 2021 15:39:30: 34000000 INFO @ Wed, 08 Dec 2021 15:39:30: 20000000 INFO @ Wed, 08 Dec 2021 15:39:32: 28000000 INFO @ Wed, 08 Dec 2021 15:39:35: 35000000 INFO @ Wed, 08 Dec 2021 15:39:36: 21000000 INFO @ Wed, 08 Dec 2021 15:39:38: 29000000 INFO @ Wed, 08 Dec 2021 15:39:41: 36000000 INFO @ Wed, 08 Dec 2021 15:39:42: 22000000 INFO @ Wed, 08 Dec 2021 15:39:43: 30000000 INFO @ Wed, 08 Dec 2021 15:39:47: 37000000 INFO @ Wed, 08 Dec 2021 15:39:48: 23000000 INFO @ Wed, 08 Dec 2021 15:39:49: 31000000 INFO @ Wed, 08 Dec 2021 15:39:52: 38000000 INFO @ Wed, 08 Dec 2021 15:39:54: 24000000 INFO @ Wed, 08 Dec 2021 15:39:54: 32000000 INFO @ Wed, 08 Dec 2021 15:39:58: 39000000 INFO @ Wed, 08 Dec 2021 15:40:00: 33000000 INFO @ Wed, 08 Dec 2021 15:40:00: 25000000 INFO @ Wed, 08 Dec 2021 15:40:03: 40000000 INFO @ Wed, 08 Dec 2021 15:40:05: 34000000 INFO @ Wed, 08 Dec 2021 15:40:06: 26000000 INFO @ Wed, 08 Dec 2021 15:40:09: 41000000 INFO @ Wed, 08 Dec 2021 15:40:11: 35000000 INFO @ Wed, 08 Dec 2021 15:40:12: 27000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 15:40:14: 42000000 INFO @ Wed, 08 Dec 2021 15:40:16: 36000000 INFO @ Wed, 08 Dec 2021 15:40:19: 28000000 INFO @ Wed, 08 Dec 2021 15:40:20: 43000000 INFO @ Wed, 08 Dec 2021 15:40:22: 37000000 INFO @ Wed, 08 Dec 2021 15:40:25: 29000000 INFO @ Wed, 08 Dec 2021 15:40:26: 44000000 INFO @ Wed, 08 Dec 2021 15:40:28: 38000000 INFO @ Wed, 08 Dec 2021 15:40:31: 30000000 INFO @ Wed, 08 Dec 2021 15:40:31: 45000000 INFO @ Wed, 08 Dec 2021 15:40:33: 39000000 INFO @ Wed, 08 Dec 2021 15:40:37: 46000000 INFO @ Wed, 08 Dec 2021 15:40:37: 31000000 INFO @ Wed, 08 Dec 2021 15:40:39: 40000000 INFO @ Wed, 08 Dec 2021 15:40:42: 47000000 INFO @ Wed, 08 Dec 2021 15:40:43: 32000000 INFO @ Wed, 08 Dec 2021 15:40:44: 41000000 INFO @ Wed, 08 Dec 2021 15:40:48: 48000000 INFO @ Wed, 08 Dec 2021 15:40:49: 33000000 INFO @ Wed, 08 Dec 2021 15:40:50: 42000000 INFO @ Wed, 08 Dec 2021 15:40:53: 49000000 INFO @ Wed, 08 Dec 2021 15:40:54: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 15:40:54: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 15:40:54: #1 total tags in treatment: 21148259 INFO @ Wed, 08 Dec 2021 15:40:54: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:40:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:40:55: 34000000 INFO @ Wed, 08 Dec 2021 15:40:55: #1 tags after filtering in treatment: 15190160 INFO @ Wed, 08 Dec 2021 15:40:55: #1 Redundant rate of treatment: 0.28 INFO @ Wed, 08 Dec 2021 15:40:55: #1 finished! INFO @ Wed, 08 Dec 2021 15:40:55: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:40:55: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:40:55: 43000000 INFO @ Wed, 08 Dec 2021 15:40:56: #2 number of paired peaks: 1172 INFO @ Wed, 08 Dec 2021 15:40:56: start model_add_line... INFO @ Wed, 08 Dec 2021 15:40:56: start X-correlation... INFO @ Wed, 08 Dec 2021 15:40:56: end of X-cor INFO @ Wed, 08 Dec 2021 15:40:56: #2 finished! INFO @ Wed, 08 Dec 2021 15:40:56: #2 predicted fragment length is 151 bps INFO @ Wed, 08 Dec 2021 15:40:56: #2 alternative fragment length(s) may be 4,151 bps INFO @ Wed, 08 Dec 2021 15:40:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.05_model.r INFO @ Wed, 08 Dec 2021 15:40:56: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:40:56: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:41:00: 44000000 INFO @ Wed, 08 Dec 2021 15:41:01: 35000000 INFO @ Wed, 08 Dec 2021 15:41:06: 45000000 INFO @ Wed, 08 Dec 2021 15:41:06: 36000000 INFO @ Wed, 08 Dec 2021 15:41:11: 46000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 15:41:12: 37000000 INFO @ Wed, 08 Dec 2021 15:41:17: 47000000 INFO @ Wed, 08 Dec 2021 15:41:18: 38000000 INFO @ Wed, 08 Dec 2021 15:41:22: 48000000 INFO @ Wed, 08 Dec 2021 15:41:24: 39000000 INFO @ Wed, 08 Dec 2021 15:41:27: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:41:27: 49000000 INFO @ Wed, 08 Dec 2021 15:41:29: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 15:41:29: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 15:41:29: #1 total tags in treatment: 21148259 INFO @ Wed, 08 Dec 2021 15:41:29: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:41:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:41:29: #1 tags after filtering in treatment: 15190160 INFO @ Wed, 08 Dec 2021 15:41:29: #1 Redundant rate of treatment: 0.28 INFO @ Wed, 08 Dec 2021 15:41:29: #1 finished! INFO @ Wed, 08 Dec 2021 15:41:29: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:41:29: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:41:30: #2 number of paired peaks: 1172 INFO @ Wed, 08 Dec 2021 15:41:30: start model_add_line... INFO @ Wed, 08 Dec 2021 15:41:30: start X-correlation... INFO @ Wed, 08 Dec 2021 15:41:30: end of X-cor INFO @ Wed, 08 Dec 2021 15:41:30: #2 finished! INFO @ Wed, 08 Dec 2021 15:41:30: #2 predicted fragment length is 151 bps INFO @ Wed, 08 Dec 2021 15:41:30: #2 alternative fragment length(s) may be 4,151 bps INFO @ Wed, 08 Dec 2021 15:41:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.10_model.r INFO @ Wed, 08 Dec 2021 15:41:30: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:41:30: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:41:30: 40000000 INFO @ Wed, 08 Dec 2021 15:41:36: 41000000 INFO @ Wed, 08 Dec 2021 15:41:42: 42000000 INFO @ Wed, 08 Dec 2021 15:41:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.05_peaks.xls INFO @ Wed, 08 Dec 2021 15:41:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:41:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.05_summits.bed INFO @ Wed, 08 Dec 2021 15:41:42: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (4135 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 15:41:47: 43000000 INFO @ Wed, 08 Dec 2021 15:41:53: 44000000 INFO @ Wed, 08 Dec 2021 15:41:59: 45000000 INFO @ Wed, 08 Dec 2021 15:42:02: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:42:05: 46000000 INFO @ Wed, 08 Dec 2021 15:42:10: 47000000 INFO @ Wed, 08 Dec 2021 15:42:16: 48000000 INFO @ Wed, 08 Dec 2021 15:42:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.10_peaks.xls INFO @ Wed, 08 Dec 2021 15:42:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:42:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.10_summits.bed INFO @ Wed, 08 Dec 2021 15:42:17: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (2151 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 15:42:22: 49000000 INFO @ Wed, 08 Dec 2021 15:42:23: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 15:42:23: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 15:42:23: #1 total tags in treatment: 21148259 INFO @ Wed, 08 Dec 2021 15:42:23: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:42:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:42:23: #1 tags after filtering in treatment: 15190160 INFO @ Wed, 08 Dec 2021 15:42:23: #1 Redundant rate of treatment: 0.28 INFO @ Wed, 08 Dec 2021 15:42:23: #1 finished! INFO @ Wed, 08 Dec 2021 15:42:23: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:42:23: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:42:24: #2 number of paired peaks: 1172 INFO @ Wed, 08 Dec 2021 15:42:24: start model_add_line... INFO @ Wed, 08 Dec 2021 15:42:24: start X-correlation... INFO @ Wed, 08 Dec 2021 15:42:24: end of X-cor INFO @ Wed, 08 Dec 2021 15:42:24: #2 finished! INFO @ Wed, 08 Dec 2021 15:42:24: #2 predicted fragment length is 151 bps INFO @ Wed, 08 Dec 2021 15:42:24: #2 alternative fragment length(s) may be 4,151 bps INFO @ Wed, 08 Dec 2021 15:42:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.20_model.r INFO @ Wed, 08 Dec 2021 15:42:24: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:42:24: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:42:56: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:43:10: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.20_peaks.xls INFO @ Wed, 08 Dec 2021 15:43:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:43:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX10342575/SRX10342575.20_summits.bed INFO @ Wed, 08 Dec 2021 15:43:10: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (969 records, 4 fields): 3 millis CompletedMACS2peakCalling