BodyParts3D is a dictionary-type database for anatomy in which shapes and positions of body parts are represented by 3D human models. This directory contains the models labeled with anatomical terms in BodyParts3D.
| Data name | README |
| Description of data contents | HTML file to describe "BodyParts3D" data. |
| File | README_e.html(English) |
| Data name | Schematic illustration of coordinate system of 3D organ models |
| Description of data contents |
Schematic illustration of the coordinate system of 3D organ models used in BodyParts3D |
| File | coordinate_sytem.png (28KB) |
| Data name | Table of 3D organ model IDs and organ names |
| Description of data contents |
List of downloadable 3D organ models in a tab-delimited text file format, describing the correspondence between 3D organ model IDs and organ names |
| File | partsList.txt (35KB) |
| Data item | Description |
|---|---|
| id | ID of the corresponding FMA (Foundational Model of Anatomy), starting with "FMA". If a corresponding concept is not found in the FMA, a BodyParts3D's original ID that begins with "BP" is assigned. |
| en | English name. Basically, a preferred name of FMA is assigned. |
| phase_number | The stage of data generation, i.e. the quality of data, which consists of three phases from phase1 to phase3. |
| last_updated | Last updated date of the model |
| organ_system | Organ system to which the organ belongs (e.g. nervous system or circulatory system) |
| Data name | Data describing the inclusion (part-of) relationships between two organs |
| Description of data contents |
File of data describing the inclusion (part-of) relationships between two organs of the downloadable 3D organ models |
| File | partOf.txt(37KB) |
| Data item | Description |
|---|---|
| id | Organ ID |
| name | English name of the organ in the first column |
| part id | ID of an organ that is part of the organ in the first and second columns |
| part name | English name of the organ in the third column (part id) |
| Data name | Organ ID-specific polygon data 1 (Polygon reduction ratio = 10.0 %) |
| Description of data contents |
BodyParts3D phase-2 or 3 3D organ model data with the polygon reduction ratio of 10 %. The zip-compressed download files contain multiple files of organ ID-specific polygon data in the STL or VTK format. The polygon data file is named as "organ ID" of the 3D organ models followed by the extension ".stl" or ".vtk". |
| File | BodyParts3D-stl-0.1.zip(166MB) BodyParts3D-vtk-0.1.zip(96MB) |
| Data name | Organ ID-specific polygon data 2 (Polygon reduction ratio = 1.0 %) |
| Description of data contents |
BodyParts3D phase-2 or 3 3D organ model data with the polygon reduction ratio of 1 %. The zip-compressed download files contain multiple files of organ ID-specific polygon data in the STL or VTK format. The polygon data file is named as "organ ID" of the 3D organ models followed by the extension ".stl" or ".vtk". |
| File | BodyParts3D-stl-0.01.zip(22MB) BodyParts3D-vtk-0.01.zip(14MB) |
The polygon reduction ratio is the ratio of the number of triangles after reduction to the number before reduction. Therefore, the data volume decreases as the polygon reduction ratio decreases, and the original shape may not be preserved.
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The Standard License specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The Additional License specifies those items that are exceptionally permitted even though they are generally prohibited in the Standard License.
The Standard License for this database is the license specified in the
Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows:
"BodyParts3D, Copyright© 2008 The Database Center for Life Science licensed by CC Attribution-Share Alike 2.1 Japan".
The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found
here.
With regard to this database, you are licensed to:
under the Standard License, as long as you comply with the following conditions:
1. You must display this Additional License along with the Standard License when distributing any derivative work based on part of whole of the data from this database.
2. When you conduct research by using this database, and describe the research results in an article or paper, you always need to cite this database, and specify the name and URL of this database in the article or paper.
3.You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the Standard License and the above Additional License.
Research Organization of Information and Systems
Database Center for Life Science
E-mail : info [at] dbcls [dot] rois [dot] ac [dot] jp
You can freely provide links to all contents in this database. But, contents might be changed without notice.
| Date | Update contents |
| 2010/03/29 | BodyParts3D English archive site is opened. |
| 2009/02/09 | 3D data is updated. |
| 2008/08 | BodyPart3D(http://lifesciencedb.jp/ag/bp3d/index.jsp?locale=en) is released. |
Research Organization of Information and Systems
Database Center for Life Science
E-mail : info [at] dbcls [dot] rois [dot] ac [dot] jp