<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<csml:project majorVersion="3" minorVersion="0" projectID="local" projectVersionID="undef" xmlns:csml="http://www.csml.org/csml/version3" xmlns:xlink="http://www.w3.org/1999/xlink">
<csml:model modelID="undef" modelVersionID="undef">
<csml:entitySet>
<csml:entity id="e10" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m10" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="374.0" y="109.0"/>
<csml:shape shapeID="default" depth="72" visible="true">
<csml:image width="887.9700014344677" height="1249.1241085553218" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20045" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e7" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m7" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="345.0" y="71.0"/>
<csml:shape shapeID="default" depth="100" visible="true">
<csml:image width="839.7237354966342" height="1189.8668429177399" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20004" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cell">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e9" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m9" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="356.0" y="113.0"/>
<csml:shape shapeID="default" depth="81" visible="true">
<csml:image width="801.8791759029863" height="1154.3288303559784" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20046" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytoplasm">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e8" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m8" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="348.0" y="92.0"/>
<csml:shape shapeID="default" depth="90" visible="true">
<csml:image width="805.5569854171277" height="1169.6687428256696" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cell_WithoutCellWall_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016882" name="LPS" refUnificationXrefID="ref489;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m155666" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="831.0" y="27.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.5" height="21.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_547081" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#547081;stop-opacity:1;" offset="12%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 32.3743 l -33.6576 -5.4359 c -30.9833 -3.1573 6.111 -20.3941 -26.3424 15.4502 c -17.6949 -23.4208 -17.913 -2.7301 14.7891 -37.6391 l 12.3807 33.5667 c 12.9077 29.9752 -19.7446 4.5967 25.8135 16.4189 c -10.3176 27.9274 6.7221 17.7825 -38.1951 5.2648 l 21.2769 -28.1309 c 18.0746 -26.819 13.6337 15.7984 0.528 -31.8691 c 28.0124 -4.5076 11.1899 -15.0524 23.406 32.3743 z" style="fill:url(#MO_547081);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019394" name="TLR4" refUnificationXrefID="ref490;ref491;ref492;ref493;ref494;ref495;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3961" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="831.0" y="91.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.5" height="21.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_932e3f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#932e3f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_932e3f);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e5" name="LPS:TLR4" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m5" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="911.5" y="82.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.25433019074764" height="39.201929401447046" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="6" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019331" name="TBK1" refUnificationXrefID="ref496;ref497;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3902" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="747.0" y="295.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.5" height="22.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_d73c10" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#d73c10;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_d73c10);stroke:none;" d="M 59.9986 48.5407 c 0.9871 -13.4342 0.1887 -4.8076 -15.7675 -1.0439 c 3.9483 -9.4993 10.8696 -9.6801 13.1979 -13.904 l 2.57 -22.1338 c -13.1289 -5.0441 -4.7493 -1.6563 -5.9165 13.9392 c -8.279 -6.5065 -6.3213 -12.8227 -9.8259 -16.234 l -21.3394 -9.1642 c -9.1011 10.3168 -3.1239 3.7841 12.1112 9.6592 c -9.065 5.4778 -14.7763 1.7554 -19.2702 3.8711 l -15.7584 16.47 c 7.504 11.4202 2.8186 3.9949 13.4017 -7.9699 c 2.677 9.8921 -2.8109 13.9075 -2.0838 18.6265 l 11.6003 19.3432 c 13.739 -3.2587 4.8659 -1.3151 -3.8285 -14.5846 c 10.7193 0.6358 13.0389 6.8403 17.9825 7.6409 l 22.9278 -4.5152 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016608" name="IKK-i" refUnificationXrefID="ref498;ref499;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1599" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="881.0" y="245.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2a93dd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2a93dd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2a93dd);stroke:none;" d="M 60 48.5407 c -0.0085 -0.7599 8.2943 -1.5313 -5.0689 -5.1523 c -0.053 -4.5216 5.4767 0.3552 -5.5543 -11.4708 l 10.6232 -20.4586 c -0.7627 -0.2272 1.0317 -7.9755 -6.7189 2.9925 c -4.538 -1.3492 2.0477 -4.8438 -13.1875 1.4793 l -17.1759 -15.9308 c -0.4628 0.6195 -7.6567 -3.3978 0.9165 7.0021 c -2.7518 3.6877 -4.2113 -3.349 -2.5957 12.3851 l -21.2386 10.6128 c 0.4766 0.6101 -5.7638 5.8755 7.2852 1.3349 c 2.8376 3.6285 -4.6503 2.7743 11.5829 6.1753 l 4.0496 22.4899 c 0.7574 -0.2425 4.0945 7.0288 3.5861 -6.1771 c 4.5053 -1.4451 1.3371 5.0633 9.7545 -8.5688 l 23.7416 3.2867 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019326" name="TANK" refUnificationXrefID="ref500;ref501;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3897" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="632.0" y="328.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_62bb53" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#62bb53;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_62bb53);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016599" name="IKK-gamma" refUnificationXrefID="ref502;ref503;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1593" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="511.0" y="299.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2a93dd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2a93dd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2a93dd);stroke:none;" d="M 60 48.5407 c -0.0085 -0.7599 8.2943 -1.5313 -5.0689 -5.1523 c -0.053 -4.5216 5.4767 0.3552 -5.5543 -11.4708 l 10.6232 -20.4586 c -0.7627 -0.2272 1.0317 -7.9755 -6.7189 2.9925 c -4.538 -1.3492 2.0477 -4.8438 -13.1875 1.4793 l -17.1759 -15.9308 c -0.4628 0.6195 -7.6567 -3.3978 0.9165 7.0021 c -2.7518 3.6877 -4.2113 -3.349 -2.5957 12.3851 l -21.2386 10.6128 c 0.4766 0.6101 -5.7638 5.8755 7.2852 1.3349 c 2.8376 3.6285 -4.6503 2.7743 11.5829 6.1753 l 4.0496 22.4899 c 0.7574 -0.2425 4.0945 7.0288 3.5861 -6.1771 c 4.5053 -1.4451 1.3371 5.0633 9.7545 -8.5688 l 23.7416 3.2867 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019398" name="TLR3" refUnificationXrefID="ref504;ref505;ref506;ref507;ref508;ref509;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3965" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1231.0" y="539.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.5" height="21.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933f3f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933f3f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933f3f);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041446" name="dsRNA:TLR3" refUnificationXrefID="ref510;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19314" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1218.0" y="486.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.5" height="23.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_691efd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#691efd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_691efd);stroke:none;" d="M 49.9997 25.0002 l -12.8898 -3.128 c -7.7419 0.4334 -2.5399 -5.5634 -5.8173 -5.7503 l -26.7073 -4.8992 c -7.4971 1.6382 1.3038 -5.4518 -4.5852 -11.2225 l 3.3172 11.2316 c 4.3044 5.5897 -4.2933 4.6867 -2.8418 7.2381 l 8.4543 22.4801 c 5.3869 4.8036 -6.1039 1.7481 -8.9298 9.0503 l 9.573 -8.1035 c 3.4375 -6.0231 6.8332 0.8768 8.6588 -1.4878 l 18.253 -17.5811 c 2.1102 -6.4418 4.8 3.7038 13.5152 2.1722 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933f3f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933f3f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933f3f);stroke:none;" d="M 60 50.45 l -0.3143 -9.84 c 11.3778 -10.4057 22.1893 12.3362 0.3143 -21.0614 l -9.9372 -2.7562 c -6.8891 -13.5066 19.1926 -16.259 -20.9642 -6.7923 l -5.8275 8.1362 c -15.6359 2.0576 -10.3273 -22.3843 -13.2711 16.8638 l 6.3354 7.7854 c -2.774 14.7784 -25.5754 2.4242 12.7624 17.2146 l 9.7428 -3.3248 c 13.9212 7.0763 -5.4792 23.883 21.1586 -6.2237 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000022224" name="dsRNA" refUnificationXrefID="ref511;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m119368" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1295.0" y="567.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="25.0" height="25.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_691efd" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#691efd;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_691efd);stroke:none;" d="M 59.9996 30.0002 l -15.4678 -3.7536 c -9.2903 0.5201 -3.0479 -6.6761 -6.9808 -6.9004 l -32.0488 -5.8791 c -8.9965 1.9659 1.5646 -6.5422 -5.5022 -13.467 l 3.9806 13.4779 c 5.1653 6.7076 -5.152 5.624 -3.4102 8.6857 l 10.1452 26.9761 c 6.4643 5.7643 -7.3247 2.0977 -10.7157 10.8604 l 11.4876 -9.7242 c 4.125 -7.2277 8.1999 1.0521 10.3905 -1.7853 l 21.9036 -21.0973 c 2.5322 -7.7302 5.76 4.4445 16.2183 2.6067 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041125" name="TRIF" refUnificationXrefID="ref512;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m18998" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="995.0" y="207.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_59ab14" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#59ab14;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_59ab14);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e13" name="LPS:TLR4:TRIF" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m13" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="992.5" y="72.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.222976692971198" height="36.590200036704005" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e14" name="TLR3:dsRNA:TRIF" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m14" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1228.5" y="395.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="27.91172692237108" height="38.94659570563406" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016963" name="TRAF3" refUnificationXrefID="ref513;ref514;ref515;ref516;ref517;ref518;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1872" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1091.0" y="219.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.5" height="21.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b1527" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b1527;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b1527);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e15" name="LPS:TLR4:TRIF:TRAF3" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m15" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1074.0" y="63.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.38235294117647" height="38.970588235294116" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000042126" name="TLR7" refUnificationXrefID="ref519;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19940" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1051.0" y="447.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_bc3b31" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#bc3b31;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_bc3b31);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000042007" name="TLR8" refUnificationXrefID="ref520;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19823" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1010.0" y="650.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.5" height="23.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_ac3e3e" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#ac3e3e;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_ac3e3e);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000042012" name="TLR9" refUnificationXrefID="ref521;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19828" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1100.0" y="564.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.5" height="20.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_933448" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#933448;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_933448);stroke:none;" d="M 60 48.54 l -0.3772 -11.808 c 13.6534 -12.4868 26.6272 14.8035 0.3772 -25.2737 l -11.9246 -3.3074 c -8.2669 -16.2079 23.0311 -19.5108 -25.1571 -8.1508 l -6.993 9.7635 c -18.7631 2.4691 -12.3928 -26.8612 -15.9253 20.2365 l 7.6025 9.3425 c -3.3288 17.7341 -30.6905 2.909 15.3149 20.6575 l 11.6914 -3.9898 c 16.7054 8.4916 -6.575 28.6596 25.3903 -7.4684 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e16" name="viral nucleic acid" type="cso30:c:Dna">
<csml:entitySimulationProperty>
<csml:variable variableID="m16" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1363.0" y="617.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="50.912863070539416" height="13.576763485477178" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="46" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e17" name="TLR9:viral nucleic acid" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m17" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1075.5" y="597.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.16447258790201" height="25.915680719880022" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e18" name="TLR8:viral nulceic acid" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m18" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1046.5" y="692.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.20146642226295" height="27.185469088485256" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e19" name="TLR7:viral nucleic acid" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m19" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1045.5" y="487.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.01749708381936" height="25.73571071488084" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e20" name="TANK:TBK1:IKK-i" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m20" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="807.5" y="410.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="25.268122591301164" height="35.25784547623418" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e22" name="NAP1:TBK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m22" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="798.5" y="268.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.3239460089985" height="27.33544409265123" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e23" name="SINTBAD" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m23" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="950.5" y="298.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="15.0859327832562" height="24.4636747836587" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="35" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e24" name="TBK1:IKK-i:SINTBAD" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m24" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="872.5" y="404.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.121673701596627" height="32.26280051385576" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e25" name="NAP1:TBK1:IKK-i" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m25" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="672.5" y="320.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.63240961644339" height="31.580106441548917" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000007702" name="IRF-7" refUnificationXrefID="ref522;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m980" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="567.0" y="407.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6aef48" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#6aef48;stop-opacity:1;" offset="5%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6aef48);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e26" name="TANK:IRF-7" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m26" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="699.5" y="521.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.723546075654056" height="25.37577070488252" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e27" name="TANK:IKK-gamma" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m27" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="479.5" y="366.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.282619563406094" height="24.835860689885017" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e28" name="TLR3:dsRNA:TRIF:TRAF3" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m28" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1230.0" y="343.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.294117647058822" height="38.82352941176471" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e29" name="TLR3:dsRNA:TRIF:TRAF3:NAP1:IKK-i:TBK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m29" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1234.0" y="635.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.294117647058822" height="38.82352941176471" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000007694" name="IRF-3" refUnificationXrefID="ref523;ref524;ref525;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m977" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="766.0" y="482.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6ad24b" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#6ad24b;stop-opacity:1;" offset="9%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6ad24b);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e30" name="IRF-3{p}" refUnificationXrefID="ref526;ref527;ref528;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m30" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="822.0" y="550.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6ad24b" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#6ad24b;stop-opacity:1;" offset="9%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6ad24b);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e31" name="IRF-3{p}:IRF-3{p}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m31" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="688.5" y="651.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.233127812031316" height="22.326278953507735" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e32" name="IRF-3{p}:IRF-3{p}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m32" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="700.5" y="807.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.233127812031316" height="22.326278953507735" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e33" name="ISRE" type="cso30:c:Dna">
<csml:entitySimulationProperty>
<csml:variable variableID="m33" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="615.0" y="824.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="54.18944016980632" height="11.7410453701247" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="3" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e34" name="IRF-3{p}:IRF-3{p}:ISRE" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m34" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="711.0" y="866.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="53.92131653381332" height="15.27770635124711" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="4" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e35" name="IFN inducible genes" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m35" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="700.0" y="988.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="36.69550173010381" height="19.570934256055363" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000212" name="TRAF6" refUnificationXrefID="ref529;ref530;ref531;ref532;ref533;ref534;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m183" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="984.0" y="364.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b1f27" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b1f27;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b1f27);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e37" name="TLR3:dsRNA:TRIF:TRAF3:RIP1:TRAF6" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m37" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1230.0" y="251.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.294117647058822" height="38.82352941176471" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e38" name="TLR3:dsRNA:TRIF:TRAF3:RIP1{ub}:TRAF6" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m38" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1234.0" y="195.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.294117647058822" height="38.82352941176471" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000022125" name="TAB2" refUnificationXrefID="ref535;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m6433" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="832.0" y="200.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_61b6bb" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#61b6bb;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_61b6bb);stroke:none;" d="M 60 48.5412 l 0 -37.0821 l -37.0821 -11.4591 l -22.9179 30 l 22.9179 30 l 37.0821 -11.4591 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016574" name="TAK1" refUnificationXrefID="ref536;ref537;ref538;ref539;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1573" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="793.0" y="153.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="29.0" height="29.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_734776" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#734776;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_734776);stroke:none;" d="M 60 48.5414 l -12.552 -4.3536 c -4.9628 -1.2539 -2.3244 2.5466 0.8986 -11.5109 c -3.4541 -4.4437 1.7713 -4.7089 3.4554 -7.3184 c -4.1185 -5.6583 -4.2367 -1.5987 2.5591 -5.747 c 1.8754 -2.5235 3.97 -6.1708 5.6388 -8.1524 l -8.2323 10.0079 c -2.7874 4.1014 1.8281 2.8894 -11.2333 -4.3698 c -5.511 1.7512 -4.1616 -3.0574 -6.2505 -5.3869 c -6.9309 1.9769 -2.908 3.3384 -4.9561 -4.0908 c -1.9438 -2.4761 -4.944 -5.4979 -6.4099 -7.6197 l 7.4641 10.5389 c 3.24 3.7887 3.4544 -0.7608 -7.8409 8.8103 c 0.0483 5.5259 -4.3434 2.8195 -7.3185 3.9889 c -0.165 6.88 2.4396 3.6618 -5.6223 3.2188 c -3.0769 0.9931 -7.0254 2.7728 -9.6003 3.4432 l 12.8455 -3.4945 c 4.7898 -1.7598 0.3068 -3.3597 6.3871 9.8147 c 5.5407 1.664 1.4772 4.7998 1.7274 7.8523 c 6.8289 2.2753 4.4157 -1.0751 1.4814 6.08 c 0.0423 3.0898 0.6019 7.2116 0.4764 9.7476 l 0.4749 -12.6987 c -0.2796 -4.8764 -3.2648 -1.3155 11.7884 -2.7443 c 3.3761 -4.4975 5.2562 0.1471 8.386 0.8639 c 4.3855 -5.4739 0.2895 -4.3263 6.5377 0.5388 c 3.1029 0.9165 7.3975 1.6842 9.895 2.5812 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e39" name="TAK1:TAB2" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m39" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="968.5" y="238.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.033327778703548" height="23.306115647392097" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e40" name="TLR3:dsRNA:TRIF:TRAF3:RIP1{ub}:TRAF6:TAB2:TAK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m40" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1234.0" y="131.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.294117647058822" height="38.82352941176471" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000210" name="IKK-alpha" refUnificationXrefID="ref540;ref541;ref542;ref543;ref544;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m181" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="469.0" y="209.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2290b9" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2290b9;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2290b9);stroke:none;" d="M 60 48.5407 c -0.0085 -0.7599 8.2943 -1.5313 -5.0689 -5.1523 c -0.053 -4.5216 5.4767 0.3552 -5.5543 -11.4708 l 10.6232 -20.4586 c -0.7627 -0.2272 1.0317 -7.9755 -6.7189 2.9925 c -4.538 -1.3492 2.0477 -4.8438 -13.1875 1.4793 l -17.1759 -15.9308 c -0.4628 0.6195 -7.6567 -3.3978 0.9165 7.0021 c -2.7518 3.6877 -4.2113 -3.349 -2.5957 12.3851 l -21.2386 10.6128 c 0.4766 0.6101 -5.7638 5.8755 7.2852 1.3349 c 2.8376 3.6285 -4.6503 2.7743 11.5829 6.1753 l 4.0496 22.4899 c 0.7574 -0.2425 4.0945 7.0288 3.5861 -6.1771 c 4.5053 -1.4451 1.3371 5.0633 9.7545 -8.5688 l 23.7416 3.2867 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000248" name="IKK" refUnificationXrefID="ref545;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m207" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="572.0" y="196.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_11f29d" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#11f29d;stop-opacity:1;" offset="16%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 42.4263 c -0.3693 -0.8655 8.2994 -5.4905 -7.9574 -3.6103 c -2.2005 -5.1493 6.1278 -2.0621 -11.4802 -10.6206 l 1.864 -28.1954 c -0.8655 0.3693 -5.4905 -8.2994 -3.6103 7.9574 c -5.1493 2.2005 -2.0621 -6.1278 -10.6206 11.4802 l -28.1954 -1.864 c 0.3693 0.8655 -8.2994 5.4905 7.9574 3.6103 c 2.2005 5.1493 -6.1278 2.0621 11.4802 10.6206 l -1.864 28.1954 c 0.8655 -0.3693 5.4905 8.2994 3.6103 -7.9574 c 5.1493 -2.2005 2.0621 6.1278 10.6206 -11.4802 l 28.1954 1.864 z" style="fill:url(#MO_11f29d);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000211" name="IKK-beta" refUnificationXrefID="ref546;ref547;ref548;ref549;ref550;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m182" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="470.0" y="258.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2aabdb" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2aabdb;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2aabdb);stroke:none;" d="M 60 48.5407 c -0.0085 -0.7599 8.2943 -1.5313 -5.0689 -5.1523 c -0.053 -4.5216 5.4767 0.3552 -5.5543 -11.4708 l 10.6232 -20.4586 c -0.7627 -0.2272 1.0317 -7.9755 -6.7189 2.9925 c -4.538 -1.3492 2.0477 -4.8438 -13.1875 1.4793 l -17.1759 -15.9308 c -0.4628 0.6195 -7.6567 -3.3978 0.9165 7.0021 c -2.7518 3.6877 -4.2113 -3.349 -2.5957 12.3851 l -21.2386 10.6128 c 0.4766 0.6101 -5.7638 5.8755 7.2852 1.3349 c 2.8376 3.6285 -4.6503 2.7743 11.5829 6.1753 l 4.0496 22.4899 c 0.7574 -0.2425 4.0945 7.0288 3.5861 -6.1771 c 4.5053 -1.4451 1.3371 5.0633 9.7545 -8.5688 l 23.7416 3.2867 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e41" name="IKK{active}" refUnificationXrefID="ref551;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m41" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="602.0" y="254.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_11f29d" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#11f29d;stop-opacity:1;" offset="16%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 42.4263 c -0.3693 -0.8655 8.2994 -5.4905 -7.9574 -3.6103 c -2.2005 -5.1493 6.1278 -2.0621 -11.4802 -10.6206 l 1.864 -28.1954 c -0.8655 0.3693 -5.4905 -8.2994 -3.6103 7.9574 c -5.1493 2.2005 -2.0621 -6.1278 -10.6206 11.4802 l -28.1954 -1.864 c 0.3693 0.8655 -8.2994 5.4905 7.9574 3.6103 c 2.2005 5.1493 -6.1278 2.0621 11.4802 10.6206 l -1.864 28.1954 c 0.8655 -0.3693 5.4905 8.2994 3.6103 -7.9574 c 5.1493 -2.2005 2.0621 6.1278 10.6206 -11.4802 l 28.1954 1.864 z" style="fill:url(#MO_11f29d);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e42" name="p65:p50(NF-KappaB)" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m43" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="515.5" y="465.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.91134810864856" height="25.605732377937013" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000080947" name="RelA-p65" refUnificationXrefID="ref552;ref553;ref554;ref555;ref556;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m55295" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="464.0" y="408.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2dc489" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2dc489;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2dc489);stroke:none;" d="M 60 48.5413 c 2.0277 -2.2844 -8.0978 -7.7581 -0.9395 -12.9896 c -5.593 -9.2122 -11.7316 -0.3774 0.299 -9.137 c -7.4593 -9.2084 -18.4088 3.2383 0.6404 -14.956 c -1.6576 -2.54 -10.2606 4.9275 -13.2798 -3.164 c -10.9404 2.2124 -4.0025 10.4947 -9.0443 -3.0939 c -11.5133 3.9016 -2.4503 17.6514 -14.7578 -5.2008 c -3.0524 0.7146 1.7564 10.8036 -7.2677 11.0338 c -1.1684 10.5796 9.2576 6.8636 -5.889 7.2248 c 0.3434 11.6199 16.8945 7.6708 -9.7614 11.7412 c -0.2289 2.9817 11.3463 1.7496 8.7881 9.9835 c 10.2183 4.326 9.7241 -6.2531 5.4049 7.5591 c 11.7256 3.28 12.8915 -12.911 8.7251 12.4577 c 2.9112 1.1285 5.2556 -9.7221 12.6988 -4.8637 c 7.4835 -7.9058 -3.2481 -10.7278 9.2294 -2.5529 c 6.9031 -9.5926 -8.9268 -15.65 15.1537 -4.0421 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000233" name="IKB-alpha" refUnificationXrefID="ref557;ref558;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m199" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="563.0" y="543.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8fc9b5" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#8fc9b5;stop-opacity:1;" offset="10%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5416 c -12.2887 -5.51 21.3933 -33.9099 -21.3163 -13.9968 c 4.1476 -32.1477 41.6771 -13.8734 21.3163 -23.0851 c -9.3074 9.4122 -27.2991 -29.8291 -20.5838 14.9544 c -30.867 -13.6858 -0.9947 -41.9841 -16.4984 -26.414 c 6.5356 11.3273 -38.2647 15.4749 8.5938 23.2394 c -23.2245 23.6892 -42.292 -12.074 -31.5116 6.7606 c 13.3468 -2.4112 3.6502 39.3929 25.895 -0.5925 c 16.5133 28.3265 -25.1436 34.5229 -2.9772 30.5925 c 1.7136 -12.8169 40.5203 8.8711 7.41 -23.6057 c 33.4306 -6.1823 26.7532 33.4099 29.6723 12.146 z" style="fill:url(#MO_8fc9b5);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e44" name="p65:p50:IKBalpha" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m45" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="510.5" y="590.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.948063864929342" height="32.020554230133975" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e45" name="p65:p50:IKBalpha{p}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m46" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="542.5" y="646.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.948063864929342" height="32.020554230133975" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e46" name="p65:p50:IKBalpha{p}{ub}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m47" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="488.5" y="692.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.948063864929342" height="32.020554230133975" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e48" name="p65:p50" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m49" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="549.5" y="843.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.91134810864856" height="25.605732377937013" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e49" name="proinflammatory genes" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m63" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="535.0" y="940.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="53.35640138408304" height="28.456747404844293" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearCentromere">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e63" name="LPS:TLR4:TRIF:TRAF3:TANK:TBK1:IKK-i" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m64" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="746.0" y="63.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.38235294117647" height="38.970588235294116" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e64" name="TLR3:dsRNA:TRIF:TRAF3:RIP1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m65" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1230.0" y="303.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.294117647058822" height="38.82352941176471" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019406" name="Tollip" refUnificationXrefID="ref559;ref560;ref561;ref562;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m3973" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="540.0" y="156.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_38ba17" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#38ba17;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_38ba17);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e65" name="LPS:TLR4:Tollip" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m66" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="648.5" y="80.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.222976692971198" height="36.590200036704005" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000068831" name="MAL" refUnificationXrefID="ref563;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m43675" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="448.0" y="152.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="27.0" height="27.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_5f192f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#5f192f;stop-opacity:1;" offset="46%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 59.9991 48.5403 c 4.7774 -12.6455 -11.3979 -12.6219 -40.0153 -19.1765 c 8.9908 -19.846 -24.8854 -12.5781 40.0153 -17.905 c -11.1687 -8.2288 -16.144 6.4094 -31.5417 30.2687 c -17.0678 -14.2645 -20.2681 18.6226 -5.5393 -41.7275 c -11.6803 7.5593 1.4207 16.5827 20.5211 37.884 c -19.5393 11.03 12.3594 24.0877 -43.4392 -7.884 c 3.9502 12.901 17.0218 3.8392 44.225 -6.8557 c 4.9918 21.0816 27.9062 -3.7359 -21.3069 36.8557 c 14.1215 0.4139 9.0993 -14.2102 6.8109 -42.1204 c 22.6246 1.9988 4.8878 -26.3963 30.271 30.6616 z" style="fill:url(#MO_5f192f);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e66" name="LPS:TLR4:Tollip:Mal" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m67" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="502.0" y="78.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.470588235294123" height="39.117647058823536" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016573" name="MyD88" refUnificationXrefID="ref564;ref565;ref566;ref567;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1572" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="416.0" y="328.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="28.0" height="28.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_d14d35" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#d14d35;stop-opacity:1;" offset="13%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 45.6589 40.7351 c -12.8034 -17.2246 -3.4958 -15.396 14.3411 -6.9145 c -5.6247 -21.6076 15.286 -16.8559 -23.1584 -3.4266 l 8.8172 -14.5467 c -20.2529 6.9178 -15.6471 -1.4149 -2.1102 -15.8473 c -22.1809 -1.2997 -11.2242 -19.8223 -10.3989 21.0812 l -11.038 -12.9242 c 0.2862 21.4997 -6.1744 14.5214 -15.6455 -2.8798 c -8.0838 20.8041 -22.2224 4.6053 16.7319 16.4554 l -15.639 6.5589 c 20.4302 6.3701 11.8309 10.3902 -7.5593 14.0677 c 17.1848 14.1568 -2.5103 22.6686 20.7392 -10.9109 l 1.3726 16.9777 c 12.3399 -17.563 13.4865 -8.0998 10.9738 11.5738 c 18.7046 -12.0544 20.6709 9.4044 -3.9138 -23.1991 l 16.4871 3.9342 z" style="fill:url(#MO_d14d35);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e67" name="LPS:TLR4:Tollip:Mal:MyD88" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m68" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="354.0" y="178.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.470588235294123" height="39.117647058823536" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000213" name="IRAK" refUnificationXrefID="ref568;ref569;ref570;ref571;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m184" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="447.0" y="431.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.0" height="18.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_71653d" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#71653d;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_71653d);stroke:none;" d="M 53.1117 45.8329 c -1.171 -4.7103 0.7422 -4.435 6.8883 -9.5688 l -0.7383 -5.3439 l -1.9522 -9.4672 c -3.3869 -5.177 0.4165 -2.7857 -2.6392 -6.1659 l -1.5587 -3.7825 c -4.8658 -0.348 -4.0114 -2.0724 -7.0211 -9.4728 l -5.338 -0.953 l -9.6559 -1.0788 c -5.9968 1.6041 -2.5349 -1.2548 -6.7114 0.5909 l -4.0985 0.3055 c -1.8364 4.4953 -3.2214 3.1542 -11.2276 3.7144 l -2.5607 4.7549 l -4.0154 8.8004 c -0.3192 6.1685 -1.9833 2.0101 -1.5088 6.5312 l -0.9744 3.9714 c 3.731 3.1263 2.0205 4.022 0.0822 11.7684 l 3.7554 3.8917 l 7.1741 6.5178 c 5.7995 2.2082 1.3091 2.4973 5.7788 3.4456 l 3.4963 2.1488 c 4.1421 -2.5631 4.4699 -0.6685 11.2784 3.559 l 4.8816 -2.3497 l 8.4493 -4.7722 c 3.9035 -4.8036 2.7924 -0.4669 5.0805 -4.4018 l 3.135 -2.6432 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e68" name="LPS:TLR4:Tollip:Mal:MyD88:IRAK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m42" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="358.0" y="334.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.470588235294123" height="39.117647058823536" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000039077" name="IRAK-4" refUnificationXrefID="ref572;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m17258" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="426.0" y="566.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_823e42" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#823e42;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_823e42);stroke:none;" d="M 53.1117 45.8329 c -1.171 -4.7103 0.7422 -4.435 6.8883 -9.5688 l -0.7383 -5.3439 l -1.9522 -9.4672 c -3.3869 -5.177 0.4165 -2.7857 -2.6392 -6.1659 l -1.5587 -3.7825 c -4.8658 -0.348 -4.0114 -2.0724 -7.0211 -9.4728 l -5.338 -0.953 l -9.6559 -1.0788 c -5.9968 1.6041 -2.5349 -1.2548 -6.7114 0.5909 l -4.0985 0.3055 c -1.8364 4.4953 -3.2214 3.1542 -11.2276 3.7144 l -2.5607 4.7549 l -4.0154 8.8004 c -0.3192 6.1685 -1.9833 2.0101 -1.5088 6.5312 l -0.9744 3.9714 c 3.731 3.1263 2.0205 4.022 0.0822 11.7684 l 3.7554 3.8917 l 7.1741 6.5178 c 5.7995 2.2082 1.3091 2.4973 5.7788 3.4456 l 3.4963 2.1488 c 4.1421 -2.5631 4.4699 -0.6685 11.2784 3.559 l 4.8816 -2.3497 l 8.4493 -4.7722 c 3.9035 -4.8036 2.7924 -0.4669 5.0805 -4.4018 l 3.135 -2.6432 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e69" name="LPS:TLR4:Tollip:Mal:MyD88:IRAK1{p}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m69" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="358.0" y="462.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.470588235294123" height="39.117647058823536" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e70" name="LPS:TLR4:Tollip:Mal:MyD88:IRAK1{p}:TRAF6" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m70" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="362.0" y="542.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.470588235294123" height="39.117647058823536" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000041541" name="TAB3" refUnificationXrefID="ref573;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m19389" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="726.0" y="538.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_61b4da" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#61b4da;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_61b4da);stroke:none;" d="M 60 48.5412 l 0 -37.0821 l -37.0821 -11.4591 l -22.9179 30 l 22.9179 30 l 37.0821 -11.4591 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e71" name="TAB2:TAB3:TAK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m71" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="716.5" y="613.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.8997981280969" height="26.371811341530552" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e72" name="LPS:TLR4:Tollip:Mal:MyD88:IRAK1{p}:TRAF6:TAB2:TAB3:TAK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m72" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="362.0" y="642.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.470588235294123" height="39.117647058823536" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000066987" name="DDX58" refUnificationXrefID="ref574;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m41844" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1099.0" y="775.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_75175a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#75175a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_75175a);stroke:none;" d="M 55.1649 47.5686 c 0.5601 -7.2179 4.714 10.4493 -1.2168 -14.4358 c 2.6176 -7.4525 9.2483 -0.5606 -1.731 -25.2694 c 2.8438 -1.6074 6.452 -2.3695 7.7829 16.8886 c 2.2607 -1.648 3.0198 0.1667 -4.8357 -13.094 c -6.6798 -2.7638 11.3773 -1.2622 -14.0813 -3.302 c -6.2663 -4.7972 2.3258 -8.9846 -24.525 -6.1598 c -0.6471 -3.2063 -0.2561 -6.8791 18.4384 -2.1963 c -0.8663 -2.6634 1.0914 -2.8258 -13.9255 0.5606 c -4.6884 5.5095 2.3178 -11.2295 -7.4858 12.3956 c -6.4904 4.4877 -7.8112 -4.9922 -13.4267 21.4624 c -3.2439 -0.3741 -6.6099 -1.8821 3.6125 -18.246 c -2.7963 0.0021 -2.3455 -1.9131 -3.7709 13.4408 c 3.7821 6.1695 -9.9444 -5.6778 9.4547 10.9623 c 2.2549 7.5706 -7.1529 5.8991 16.2273 19.4243 c -1.3576 2.9749 -3.8296 5.7158 -16.206 -9.0802 c -0.862 2.6644 -2.5413 1.6432 11.5949 7.7464 c 7.026 -1.6967 -8.4636 7.7202 13.3291 -5.6201 c 7.8837 0.1913 3.39 8.6378 23.4555 -9.4575 c 2.4048 2.2129 4.243 5.4144 -13.6284 12.6339 c 2.2634 1.6448 0.7751 2.929 10.9372 -8.6533 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e74" name="DDX58:dsRNA" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m74" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1076.0" y="819.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.292817679558013" height="21.436464088397788" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000103999" name="IFIH1" refUnificationXrefID="ref575;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m76904" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1053.0" y="889.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.0" height="18.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_1ec8f1" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#1ec8f1;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_1ec8f1);stroke:none;" d="M 60 48.5418 c -2.9644 -1.7553 -2.5903 -6.4943 -2.5531 -2.2866 c 4.9418 -1.2857 7.2631 -6.8443 -4.1717 -7.7833 l 6.3504 -2.0842 l 0.3744 -24.9285 c -2.6713 2.1389 -7.2945 0.3361 -3.0755 1.6028 c 0.2413 -4.8673 -4.5994 -8.6848 -9.0725 1.3684 l -0.1216 -6.3883 l -24.8123 -8.0421 c 1.3134 3.0773 -1.918 6.7021 0.6523 3.2769 c -4.7925 -1.7224 -10.1058 1.4769 -1.4353 8.6289 l -6.4257 -1.8641 l -15.7093 19.9582 c 3.4829 -0.2371 6.1091 3.8057 3.4785 0.4225 c -3.2035 3.8027 -1.6462 9.5975 8.1852 3.9646 l -3.8497 5.2361 l 15.1034 20.3768 c 0.8393 -3.2237 5.6937 -4.35 1.4976 -3.0159 c 2.8126 4.0727 9.0884 4.4548 6.494 -6.1787 l 4.0466 5.1002 l 25.0438 -7.3647 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e75" name="IFIH1:dsRNA" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m75" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1156.0" y="963.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.292817679558013" height="21.436464088397788" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000090351" name="Efp" refUnificationXrefID="ref576;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m63891" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="999.0" y="923.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_76f0e9" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#76f0e9;stop-opacity:1;" offset="13%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 l -6.377 -15.0867 l 2.2961 -14.4747 l 4.0809 -7.5207 l -17.0575 1.1059 l -13.7652 -6.5498 l -6.2594 -6.0152 l -4.165 15.7703 l -10.8034 10.4267 l -7.9495 3.803 l 14.4832 8.6406 l 7.0883 12.9939 l 1.3465 8.3655 l 13.1163 -10.43 l 15.1842 -2.3961 l 8.7815 1.3672 z" style="fill:url(#MO_76f0e9);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e76" name="DDX58{ub}:dsRNA" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m76" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="992.0" y="775.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.292817679558013" height="21.436464088397788" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e77" name="IFIH1{ub}:dsRNA" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m77" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1028.0" y="1007.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.292817679558013" height="21.436464088397788" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="29" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000094908" name="MAVS" refUnificationXrefID="ref577;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m68199" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="970.0" y="878.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_27af0a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#27af0a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_27af0a);stroke:none;" d="M 59.9992 48.5408 c -4.8875 -0.5772 -6.444 -4.509 -4.4684 -8.7121 l -5.1097 -15.2681 c -2.3994 -10.3754 10.5012 -2.7373 9.578 -13.1018 c -2.0877 4.2424 -6.5002 4.4351 -10.0928 1.3497 l -16.847 -0.0964 c -11.1166 -1.0359 0.5075 -10.3444 -10.1418 -12.7122 c 3.5976 3.1992 2.4265 7.2499 -1.7691 9.5461 l -5.3024 15.2088 c -4.4714 9.7352 -10.1876 -3.6557 -15.8461 5.2451 c 4.3108 -2.2652 8.0001 0.0455 8.9994 4.5501 l 13.5703 9.4959 c 8.3535 7.0524 -6.8039 8.085 0.3484 15.954 c -0.9331 -4.5992 2.5176 -7.2219 7.3313 -6.7338 l 13.6892 -9.3399 c 9.6339 -5.3764 5.9824 8.6524 16.0614 4.6148 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e78" name="DDX58{ub}:dsRNA:MAVS" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m78" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="947.5" y="719.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.66048816296569" height="34.40998348320794" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e79" name="IFIH1{ub}:dsRNA:MAVS" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m79" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="925.5" y="901.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.97742705083502" height="30.666177280234912" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e80" name="DNA" type="cso30:c:Dna">
<csml:entitySimulationProperty>
<csml:variable variableID="m80" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1298.0" y="1021.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="60.0" height="13.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="3" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e82" name="DNA:DAI" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m82" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1000.0" y="1133.5"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="60.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="4" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e83" name="TRAF3{active}" refUnificationXrefID="ref578;ref579;ref580;ref581;ref582;ref583;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m83" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="861.0" y="661.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.5" height="21.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b1527" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b1527;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b1527);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e84" name="NAP1:TBK1:IKK-i{active}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m84" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="870.5" y="610.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.63240961644339" height="31.580106441548917" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e85" name="TANK:TBK1:IKK-i{active}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m85" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="759.5" y="722.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="25.268122591301164" height="35.25784547623418" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e86" name="TBK1:IKK-i:SINTBAD{active}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m86" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="938.5" y="394.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.121673701596627" height="32.26280051385576" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e87" name="IRF-7{p}" refUnificationXrefID="ref584;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m87" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="659.0" y="443.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" viewBox="0 0 60.0 60.0" height="60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6aef48" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" cy="50%" fy="50%" xlink:actuate="onLoad"&gt;
&lt;stop style="stop-color:white;stop-opacity:1;" offset="0%"/&gt;
&lt;stop style="stop-color:#6aef48;stop-opacity:1;" offset="5%"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path d="M 60 48.5413 c -5.4791 -8.878 6.0417 -4.3573 -9.8171 -2.9348 l -4.5651 -27.6151 c -1.9754 -5.4859 12.2339 -9.9822 14.3816 -6.5322 c -10.571 2.2124 -2.4899 -6.8115 -5.9681 7.9727 l -29.0256 -4.4044 c -6.096 0.0919 -6.2013 -14.1503 -2.0879 -15.0274 c -1.0542 10.2454 -7.5808 0.1474 6.1282 7.8622 l -13.374 24.8929 c -1.7923 5.5423 -16.0665 1.2366 -15.6721 -2.7553 c 9.9194 4.1194 -2.1948 6.9024 9.7557 -3.1134 l 20.7599 19.7894 c 4.9886 3.3337 -3.7283 14.915 -7.5982 13.3243 c 7.1844 -7.6993 6.2238 4.1184 -0.0987 -9.7867 l 26.2042 -12.6627 c 4.875 -3.4821 13.7627 7.9809 10.9766 10.9902 z" style="fill:url(#MO_6aef48);stroke:none;"/&gt;
&lt;/svg&gt;
</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e88" name="TRAF6{active}" refUnificationXrefID="ref585;ref586;ref587;ref588;ref589;ref590;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m88" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="856.0" y="800.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b1f27" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b1f27;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b1f27);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e90" name="DNA:DAI:TBK1" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m91" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="867.5" y="1115.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.652596806753536" height="34.39897228849331" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="30" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000289" name="TNF-alpha" refUnificationXrefID="ref591;ref592;ref593;ref594;ref595;ref596;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m230" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="307.0" y="1003.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_409e59" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#409e59;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_409e59);stroke:none;" d="M 48.7906 44.0807 c -5.6296 -9.8987 6.7856 -16.8754 11.2094 -12.1403 l -11.2094 -17.7565 c -11.3601 2.1808 -14.3041 -11.53 -8.3348 -14.1839 l -20.7212 4.9456 c -1.3912 11.2463 -15.6259 9.7495 -16.3609 3.3737 l -1.5971 20.813 c 10.5003 4.77 4.6466 17.5554 -1.7765 16.2691 l 19.7341 7.9176 c 7.8805 -8.2983 18.4977 1.1005 15.2629 6.6809 l 13.7936 -15.9197 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e93" name="RelA-p65{p}" refUnificationXrefID="ref597;ref598;ref599;ref600;ref601;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m94" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="504.0" y="1148.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2dc489" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2dc489;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2dc489);stroke:none;" d="M 60 48.5413 c 2.0277 -2.2844 -8.0978 -7.7581 -0.9395 -12.9896 c -5.593 -9.2122 -11.7316 -0.3774 0.299 -9.137 c -7.4593 -9.2084 -18.4088 3.2383 0.6404 -14.956 c -1.6576 -2.54 -10.2606 4.9275 -13.2798 -3.164 c -10.9404 2.2124 -4.0025 10.4947 -9.0443 -3.0939 c -11.5133 3.9016 -2.4503 17.6514 -14.7578 -5.2008 c -3.0524 0.7146 1.7564 10.8036 -7.2677 11.0338 c -1.1684 10.5796 9.2576 6.8636 -5.889 7.2248 c 0.3434 11.6199 16.8945 7.6708 -9.7614 11.7412 c -0.2289 2.9817 11.3463 1.7496 8.7881 9.9835 c 10.2183 4.326 9.7241 -6.2531 5.4049 7.5591 c 11.7256 3.28 12.8915 -12.911 8.7251 12.4577 c 2.9112 1.1285 5.2556 -9.7221 12.6988 -4.8637 c 7.4835 -7.9058 -3.2481 -10.7278 9.2294 -2.5529 c 6.9031 -9.5926 -8.9268 -15.65 15.1537 -4.0421 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e94" name="p65:p50(NF-KappaB){active}" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m89" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="559.5" y="729.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.91134810864856" height="25.605732377937013" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000207" name="TRADD" refUnificationXrefID="ref602;ref603;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m178" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="423.0" y="1259.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_3ad848" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#3ad848;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_3ad848);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="G011131" name="TANK" refUnificationXrefID="ref604;ref605;" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m94016" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="626.0" y="1010.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#3ec535" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#3ec535;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#3ec535;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#28163F" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;/defs&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="0,60 5.4121,55.4096 5.7389,55.06 6.0446,54.4747 6.3308,53.669 6.5988,52.6597 6.85,51.4625 7.086,50.0951 7.3084,48.5725 7.5185,46.9122 7.7176,45.1294 7.9075,43.2418 8.0893,41.2648 8.2647,39.2155 8.4352,37.1098 8.6021,34.9635 8.7669,32.7941 8.9312,30.6181 9.0962,28.4512 9.2635,26.3088 9.4348,24.2093 9.6113,22.1683 9.7943,20.2017 9.9856,18.3261 10.1866,16.5582 10.3987,14.9142 10.6231,13.4103 10.8617,12.0629 11.1155,10.8889 11.3866,9.9046 11.6759,9.1255 11.9852,8.5686 12.3157,8.2502 12.6689,8.1875 13.026,8.3869 13.3701,8.8365 13.702,9.519 10.3627,2.6373 9.9474,1.7838 9.5171,1.2214 9.0714,0.9722 8.6295,1.0511 8.2163,1.4488 7.8298,2.1448 7.4682,3.1188 7.1295,4.3492 6.812,5.8167 6.5139,7.5009 6.2331,9.3809 5.9681,11.4358 5.717,13.646 5.4777,15.9899 5.2488,18.4483 5.0285,20.9998 4.8145,23.6243 4.6051,26.3015 4.3989,29.0108 4.1935,31.7312 3.9875,34.443 3.7788,37.1246 3.5658,39.7578 3.3465,42.319 3.1191,44.7906 2.8818,47.1504 2.633,49.3783 2.3703,51.4539 2.0924,53.3568 1.7973,55.0662 1.4832,56.5624 1.1482,57.8244 0.7907,58.8315 0.4085,59.5636" /&gt;&lt;polygon style="fill:url(#id_#3ec535);stroke:none;" points="10.3627,2.6373 13.702,9.519 14.0227,10.4186 14.3318,11.5175 14.6304,12.7984 14.9186,14.2465 15.197,15.8431 15.4659,17.5716 15.726,19.4163 15.9776,21.3597 16.2211,23.3859 16.4571,25.4767 16.6861,27.6164 16.9084,29.7868 17.1245,31.9728 17.335,34.1571 17.5402,36.3224 17.7404,38.4523 17.9361,40.5304 18.1283,42.5388 18.3167,44.4618 18.5024,46.2823 18.6855,47.9831 18.8666,49.5479 19.0458,50.9596 19.2242,52.2015 19.4018,53.2575 19.579,54.1096 19.7564,54.7419 19.9346,55.1368 20.114,55.2787 20.3337,55.1534 20.5441,54.7661 18.9149,59.196 18.6519,59.6798 18.3775,59.8366 18.1532,59.6598 17.9304,59.1655 17.7086,58.3754 17.4871,57.3097 17.265,55.9903 17.0423,54.4377 16.818,52.6729 16.5919,50.717 16.3629,48.5909 16.1309,46.3156 15.8951,43.9118 15.6551,41.4012 15.4103,38.8036 15.1599,36.141 14.9033,33.4344 14.6407,30.7043 14.3704,27.9718 14.0925,25.258 13.8063,22.5839 13.5114,19.9701 13.2069,17.438 12.8924,15.009 12.5674,12.7032 12.2313,10.5418 11.883,8.5458 11.5229,6.7363 11.1497,5.1345 10.7633,3.7615" /&gt;&lt;polygon style="fill:url(#id_#3ec535);stroke:none;" points="56.1668,56.8968 50.3457,52.9266 50.4902,52.9972 50.63,53.0141 50.7648,52.982 50.8965,52.9024 51.0238,52.7798 51.1481,52.6161 51.2686,52.4147 51.3872,52.1783 51.5027,51.9101 51.6164,51.6134 51.7283,51.2895 51.8385,50.9434 51.9478,50.5768 52.0561,50.1937 52.1639,49.7964 52.2717,49.3876 52.3797,48.9706 52.4881,48.5483 52.5974,48.1236 52.7074,47.7 52.8194,47.2798 52.9331,46.8666 53.049,46.4623 53.1667,46.0709 53.2883,45.6943 53.4119,45.3375 60,47.4093 59.8448,47.8561 59.6937,48.3264 59.5458,48.8158 59.4014,49.3208 59.2591,49.8379 59.1195,50.3633 58.9816,50.8925 58.845,51.4238 58.7092,51.9512 58.5744,52.4725 58.4398,52.9833 58.305,53.4804 58.1698,53.9597 58.033,54.4173 57.8951,54.8499 57.7555,55.2542 57.6133,55.6255 57.4686,55.9613 57.3209,56.2565 57.1694,56.5081 57.0146,56.713 56.8554,56.8663 56.6913,56.9653 56.5224,57.0062 56.3475,56.984" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="51.4421,42.8884 46.5659,41.7203 46.7028,41.8023 46.8376,41.9525 46.9702,42.1664 47.1013,42.4378 47.231,42.761 47.3586,43.131 47.485,43.5425 47.6101,43.9887 47.7331,44.4656 47.8552,44.9675 47.9761,45.488 48.0958,46.0228 48.2148,46.5658 48.3322,47.1106 48.4494,47.6533 48.5655,48.188 48.6806,48.7082 48.795,49.2094 48.9091,49.6863 49.0228,50.1321 49.1361,50.5433 49.2485,50.9129 49.3616,51.2355 49.5412,51.6837 49.7141,52.0613 49.8808,52.3714 50.0415,52.6172 50.1962,52.8009 50.3457,52.9266 56.1668,56.8968 55.98,56.7393 55.7863,56.5095 55.5857,56.2025 55.3774,55.8145 55.1615,55.3428 54.9367,54.7828 54.796,54.3789 54.6547,53.9171 54.5133,53.4035 54.3712,52.8463 54.2288,52.2499 54.0854,51.6235 53.9414,50.9728 53.7963,50.3052 53.6505,49.6264 53.503,48.9453 53.3548,48.2666 53.2051,47.5986 53.0539,46.9476 52.9015,46.3204 52.7472,45.7241 52.5913,45.1661 52.4332,44.6518 52.2736,44.1894 52.1118,43.7852 51.9481,43.446 51.7817,43.1788 51.6129,42.9908" /&gt;&lt;polygon style="fill:url(#id_#3ec535);stroke:none;" points="46.5072,55.376 42.6178,51.7104 42.8505,51.8235 43.0946,51.7695 43.3515,51.5269 43.6224,51.0766 43.9089,50.3965 44.2118,49.4669 44.5328,48.2673 44.873,46.7766 45.2338,44.9751 45.3918,44.1922 45.5468,43.528 45.6996,42.976 45.85,42.5312 45.9977,42.1879 46.143,41.9407 46.2862,41.784 46.4271,41.7127 46.5659,41.7203 51.4421,42.8884 51.2686,42.8787 51.0923,42.968 50.9139,43.1639 50.7321,43.473 50.5475,43.9021 50.3595,44.4587 50.1684,45.1481 49.9745,45.9788 49.7769,46.9562 49.326,49.2087 48.9008,51.0721 48.4993,52.5718 48.1208,53.7337 47.7629,54.5837 47.4244,55.1469 47.103,55.4494 46.7979,55.5179" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="42.7693,45.6178 39.6278,43.9039 39.843,44.061 40.0506,44.359 40.2515,44.7778 40.4475,45.2963 40.6388,45.8933 40.828,46.5502 41.015,47.2449 41.2027,47.9575 41.3909,48.6667 41.5816,49.3527 41.7764,49.9943 41.9763,50.5717 42.182,51.0638 42.3954,51.4504 42.6178,51.7104 46.5072,55.376 46.2289,55.0506 45.9622,54.5678 45.7048,53.9528 45.4555,53.2308 45.2122,52.4285 44.9734,51.5712 44.7381,50.6848 44.5038,49.7943 44.2696,48.9259 44.0336,48.1049 43.7941,47.358 43.5493,46.7098 43.2981,46.1868 43.0389,45.814" /&gt;&lt;polygon style="fill:url(#id_#3ec535);stroke:none;" points="37.2968,58.9458 35.2497,54.5661 35.4034,54.8741 35.5619,55.0825 35.7257,55.1839 35.8945,55.1721 36.0692,55.0399 36.2492,54.781 36.4354,54.3885 36.6279,53.8562 36.8266,53.1772 37.0321,52.3448 37.2442,51.3518 37.4635,50.1923 37.789,48.4808 38.0959,47.0746 38.3862,45.9539 38.6604,45.0973 38.9205,44.4843 39.1677,44.0949 39.403,43.9084 39.6278,43.9039 42.7693,45.6178 42.4887,45.6233 42.1944,45.857 41.8857,46.3439 41.5604,47.1099 41.2175,48.1807 40.8548,49.5814 40.4708,51.339 40.0643,53.4783 39.7901,54.9278 39.5249,56.1689 39.2682,57.2097 39.0199,58.059 38.7793,58.7239 38.5464,59.214 38.3212,59.5379 38.103,59.7034 37.8918,59.7179 37.6872,59.5912 37.4889,59.331" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="18.9149,59.196 20.5441,54.7661 20.7465,54.1348 20.9416,53.2765 21.1309,52.2081 21.3148,50.9479 21.4944,49.5115 21.6709,47.9184 21.845,46.1844 22.0182,44.3275 22.1908,42.3647 22.3646,40.3133 22.5398,38.1907 22.7176,36.0147 22.8994,33.8023 23.0856,31.5706 23.2776,29.3372 23.4763,27.1193 23.6825,24.9344 23.8976,22.7999 24.122,20.7326 24.3571,18.7501 24.604,16.87 24.8633,15.1097 25.136,13.4858 25.4234,12.0162 25.7263,10.7186 26.0457,9.6097 26.3825,8.7074 26.7381,8.028 27.1129,7.5891 27.5082,7.4095 27.811,7.4389 28.1009,7.5919 28.3782,7.8622 28.6434,8.2436 28.897,8.7289 29.1391,9.3117 29.3705,9.9866 29.5914,10.746 29.8025,11.5843 30.0038,12.4942 30.1959,13.4695 30.3792,14.5047 30.554,15.5915 30.7211,16.7254 30.8809,17.8987 31.0334,19.1055 31.1792,20.3387 31.3186,21.5923 31.4523,22.8601 31.5807,24.1355 31.7039,25.4116 31.8227,26.6825 31.9373,27.9413 32.0481,29.1818 32.1555,30.3977 32.26,31.5821 32.3622,32.7287 32.4623,33.8314 32.5607,34.8832 32.6577,35.878 32.7541,36.809 32.8501,37.6701 32.9535,38.5773 33.0575,39.5183 33.162,40.4857 33.2674,41.4735 33.3736,42.4744 33.4814,43.4823 33.5907,44.4902 33.7016,45.4922 33.8144,46.48 33.9295,47.4484 34.0471,48.3901 34.1672,49.2987 34.2902,50.1671 34.4164,50.9887 34.5457,51.7574 34.6785,52.4656 34.8151,53.1072 34.9556,53.6756 35.1004,54.1643 35.2497,54.5661 37.2968,58.9458 37.1103,58.4435 36.9294,57.833 36.7537,57.1225 36.583,56.3202 36.4168,55.4348 36.2552,54.474 36.0976,53.4468 35.9439,52.3617 35.7939,51.2258 35.6469,50.049 35.5031,48.8383 35.3619,47.6034 35.2232,46.3512 35.0866,45.0914 34.952,43.8312 34.819,42.58 34.6873,41.3454 34.5565,40.1361 34.4267,38.9601 34.2976,37.8262 34.1775,36.7495 34.0572,35.5855 33.9356,34.3416 33.8127,33.0267 33.6876,31.6489 33.5602,30.2153 33.4294,28.735 33.295,27.2152 33.1565,25.665 33.0132,24.0912 32.8648,22.5026 32.7107,20.9077 32.5502,19.3136 32.3831,17.7291 32.2088,16.1615 32.0266,14.6203 31.836,13.1113 31.6365,11.6452 31.4275,10.2275 31.2089,8.869 30.9797,7.5753 30.7395,6.3559 30.4879,5.2186 30.2242,4.1706 29.9481,3.2212 29.6587,2.3781 29.356,1.6492 29.0392,1.0425 28.7077,0.5659 28.3609,0.2281 27.9986,0.0363 27.6202,0 27.1258,0.225 26.6575,0.7729 26.2132,1.6219 25.7921,2.7505 25.3928,4.1367 25.0141,5.7586 24.6548,7.5957 24.3139,9.6253 23.9898,11.8255 23.6812,14.1759 23.3874,16.6537 23.1069,19.2378 22.8382,21.9059 22.5802,24.6374 22.3321,27.4097 22.092,30.2018 21.8591,32.9911 21.6319,35.7565 21.4095,38.4765 21.1904,41.1298 20.9735,43.6941 20.7575,46.1473 20.5414,48.4687 20.3235,50.636 20.1028,52.6279 19.8782,54.4228 19.6482,55.9983 19.412,57.3339 19.168,58.4069" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e89" name="IKK-i" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m90" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="673.0" y="957.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="34.411764705882355" height="18.35294117647059" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="37" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="G010405" name="A20" refUnificationXrefID="ref606;ref607;" type="cso30:c:mRNA">
<csml:entitySimulationProperty>
<csml:variable variableID="m93378" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="751.0" y="1039.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#d3bbb8" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#d3bbb8;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#d3bbb8;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;linearGradient xmlns:xlink="http://www.w3.org/1999/xlink" gradientTransform="" gradientUnits="objectBoundingBox" id="id_#28163F" spreadMethod="pad" x1="0%" x2="100%" y1="0%" y2="0%"&gt;&lt;stop offset="0%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;stop offset="100%" style="stop-color:#28163F;stop-opacity:1;"/&gt;&lt;/linearGradient&gt;&lt;/defs&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="0,60 5.4121,55.4096 5.7389,55.06 6.0446,54.4747 6.3308,53.669 6.5988,52.6597 6.85,51.4625 7.086,50.0951 7.3084,48.5725 7.5185,46.9122 7.7176,45.1294 7.9075,43.2418 8.0893,41.2648 8.2647,39.2155 8.4352,37.1098 8.6021,34.9635 8.7669,32.7941 8.9312,30.6181 9.0962,28.4512 9.2635,26.3088 9.4348,24.2093 9.6113,22.1683 9.7943,20.2017 9.9856,18.3261 10.1866,16.5582 10.3987,14.9142 10.6231,13.4103 10.8617,12.0629 11.1155,10.8889 11.3866,9.9046 11.6759,9.1255 11.9852,8.5686 12.3157,8.2502 12.6689,8.1875 13.026,8.3869 13.3701,8.8365 13.702,9.519 10.3627,2.6373 9.9474,1.7838 9.5171,1.2214 9.0714,0.9722 8.6295,1.0511 8.2163,1.4488 7.8298,2.1448 7.4682,3.1188 7.1295,4.3492 6.812,5.8167 6.5139,7.5009 6.2331,9.3809 5.9681,11.4358 5.717,13.646 5.4777,15.9899 5.2488,18.4483 5.0285,20.9998 4.8145,23.6243 4.6051,26.3015 4.3989,29.0108 4.1935,31.7312 3.9875,34.443 3.7788,37.1246 3.5658,39.7578 3.3465,42.319 3.1191,44.7906 2.8818,47.1504 2.633,49.3783 2.3703,51.4539 2.0924,53.3568 1.7973,55.0662 1.4832,56.5624 1.1482,57.8244 0.7907,58.8315 0.4085,59.5636" /&gt;&lt;polygon style="fill:url(#id_#d3bbb8);stroke:none;" points="10.3627,2.6373 13.702,9.519 14.0227,10.4186 14.3318,11.5175 14.6304,12.7984 14.9186,14.2465 15.197,15.8431 15.4659,17.5716 15.726,19.4163 15.9776,21.3597 16.2211,23.3859 16.4571,25.4767 16.6861,27.6164 16.9084,29.7868 17.1245,31.9728 17.335,34.1571 17.5402,36.3224 17.7404,38.4523 17.9361,40.5304 18.1283,42.5388 18.3167,44.4618 18.5024,46.2823 18.6855,47.9831 18.8666,49.5479 19.0458,50.9596 19.2242,52.2015 19.4018,53.2575 19.579,54.1096 19.7564,54.7419 19.9346,55.1368 20.114,55.2787 20.3337,55.1534 20.5441,54.7661 18.9149,59.196 18.6519,59.6798 18.3775,59.8366 18.1532,59.6598 17.9304,59.1655 17.7086,58.3754 17.4871,57.3097 17.265,55.9903 17.0423,54.4377 16.818,52.6729 16.5919,50.717 16.3629,48.5909 16.1309,46.3156 15.8951,43.9118 15.6551,41.4012 15.4103,38.8036 15.1599,36.141 14.9033,33.4344 14.6407,30.7043 14.3704,27.9718 14.0925,25.258 13.8063,22.5839 13.5114,19.9701 13.2069,17.438 12.8924,15.009 12.5674,12.7032 12.2313,10.5418 11.883,8.5458 11.5229,6.7363 11.1497,5.1345 10.7633,3.7615" /&gt;&lt;polygon style="fill:url(#id_#d3bbb8);stroke:none;" points="56.1668,56.8968 50.3457,52.9266 50.4902,52.9972 50.63,53.0141 50.7648,52.982 50.8965,52.9024 51.0238,52.7798 51.1481,52.6161 51.2686,52.4147 51.3872,52.1783 51.5027,51.9101 51.6164,51.6134 51.7283,51.2895 51.8385,50.9434 51.9478,50.5768 52.0561,50.1937 52.1639,49.7964 52.2717,49.3876 52.3797,48.9706 52.4881,48.5483 52.5974,48.1236 52.7074,47.7 52.8194,47.2798 52.9331,46.8666 53.049,46.4623 53.1667,46.0709 53.2883,45.6943 53.4119,45.3375 60,47.4093 59.8448,47.8561 59.6937,48.3264 59.5458,48.8158 59.4014,49.3208 59.2591,49.8379 59.1195,50.3633 58.9816,50.8925 58.845,51.4238 58.7092,51.9512 58.5744,52.4725 58.4398,52.9833 58.305,53.4804 58.1698,53.9597 58.033,54.4173 57.8951,54.8499 57.7555,55.2542 57.6133,55.6255 57.4686,55.9613 57.3209,56.2565 57.1694,56.5081 57.0146,56.713 56.8554,56.8663 56.6913,56.9653 56.5224,57.0062 56.3475,56.984" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="51.4421,42.8884 46.5659,41.7203 46.7028,41.8023 46.8376,41.9525 46.9702,42.1664 47.1013,42.4378 47.231,42.761 47.3586,43.131 47.485,43.5425 47.6101,43.9887 47.7331,44.4656 47.8552,44.9675 47.9761,45.488 48.0958,46.0228 48.2148,46.5658 48.3322,47.1106 48.4494,47.6533 48.5655,48.188 48.6806,48.7082 48.795,49.2094 48.9091,49.6863 49.0228,50.1321 49.1361,50.5433 49.2485,50.9129 49.3616,51.2355 49.5412,51.6837 49.7141,52.0613 49.8808,52.3714 50.0415,52.6172 50.1962,52.8009 50.3457,52.9266 56.1668,56.8968 55.98,56.7393 55.7863,56.5095 55.5857,56.2025 55.3774,55.8145 55.1615,55.3428 54.9367,54.7828 54.796,54.3789 54.6547,53.9171 54.5133,53.4035 54.3712,52.8463 54.2288,52.2499 54.0854,51.6235 53.9414,50.9728 53.7963,50.3052 53.6505,49.6264 53.503,48.9453 53.3548,48.2666 53.2051,47.5986 53.0539,46.9476 52.9015,46.3204 52.7472,45.7241 52.5913,45.1661 52.4332,44.6518 52.2736,44.1894 52.1118,43.7852 51.9481,43.446 51.7817,43.1788 51.6129,42.9908" /&gt;&lt;polygon style="fill:url(#id_#d3bbb8);stroke:none;" points="46.5072,55.376 42.6178,51.7104 42.8505,51.8235 43.0946,51.7695 43.3515,51.5269 43.6224,51.0766 43.9089,50.3965 44.2118,49.4669 44.5328,48.2673 44.873,46.7766 45.2338,44.9751 45.3918,44.1922 45.5468,43.528 45.6996,42.976 45.85,42.5312 45.9977,42.1879 46.143,41.9407 46.2862,41.784 46.4271,41.7127 46.5659,41.7203 51.4421,42.8884 51.2686,42.8787 51.0923,42.968 50.9139,43.1639 50.7321,43.473 50.5475,43.9021 50.3595,44.4587 50.1684,45.1481 49.9745,45.9788 49.7769,46.9562 49.326,49.2087 48.9008,51.0721 48.4993,52.5718 48.1208,53.7337 47.7629,54.5837 47.4244,55.1469 47.103,55.4494 46.7979,55.5179" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="42.7693,45.6178 39.6278,43.9039 39.843,44.061 40.0506,44.359 40.2515,44.7778 40.4475,45.2963 40.6388,45.8933 40.828,46.5502 41.015,47.2449 41.2027,47.9575 41.3909,48.6667 41.5816,49.3527 41.7764,49.9943 41.9763,50.5717 42.182,51.0638 42.3954,51.4504 42.6178,51.7104 46.5072,55.376 46.2289,55.0506 45.9622,54.5678 45.7048,53.9528 45.4555,53.2308 45.2122,52.4285 44.9734,51.5712 44.7381,50.6848 44.5038,49.7943 44.2696,48.9259 44.0336,48.1049 43.7941,47.358 43.5493,46.7098 43.2981,46.1868 43.0389,45.814" /&gt;&lt;polygon style="fill:url(#id_#d3bbb8);stroke:none;" points="37.2968,58.9458 35.2497,54.5661 35.4034,54.8741 35.5619,55.0825 35.7257,55.1839 35.8945,55.1721 36.0692,55.0399 36.2492,54.781 36.4354,54.3885 36.6279,53.8562 36.8266,53.1772 37.0321,52.3448 37.2442,51.3518 37.4635,50.1923 37.789,48.4808 38.0959,47.0746 38.3862,45.9539 38.6604,45.0973 38.9205,44.4843 39.1677,44.0949 39.403,43.9084 39.6278,43.9039 42.7693,45.6178 42.4887,45.6233 42.1944,45.857 41.8857,46.3439 41.5604,47.1099 41.2175,48.1807 40.8548,49.5814 40.4708,51.339 40.0643,53.4783 39.7901,54.9278 39.5249,56.1689 39.2682,57.2097 39.0199,58.059 38.7793,58.7239 38.5464,59.214 38.3212,59.5379 38.103,59.7034 37.8918,59.7179 37.6872,59.5912 37.4889,59.331" /&gt;&lt;polygon style="fill:url(#id_#28163F);stroke:none;" points="18.9149,59.196 20.5441,54.7661 20.7465,54.1348 20.9416,53.2765 21.1309,52.2081 21.3148,50.9479 21.4944,49.5115 21.6709,47.9184 21.845,46.1844 22.0182,44.3275 22.1908,42.3647 22.3646,40.3133 22.5398,38.1907 22.7176,36.0147 22.8994,33.8023 23.0856,31.5706 23.2776,29.3372 23.4763,27.1193 23.6825,24.9344 23.8976,22.7999 24.122,20.7326 24.3571,18.7501 24.604,16.87 24.8633,15.1097 25.136,13.4858 25.4234,12.0162 25.7263,10.7186 26.0457,9.6097 26.3825,8.7074 26.7381,8.028 27.1129,7.5891 27.5082,7.4095 27.811,7.4389 28.1009,7.5919 28.3782,7.8622 28.6434,8.2436 28.897,8.7289 29.1391,9.3117 29.3705,9.9866 29.5914,10.746 29.8025,11.5843 30.0038,12.4942 30.1959,13.4695 30.3792,14.5047 30.554,15.5915 30.7211,16.7254 30.8809,17.8987 31.0334,19.1055 31.1792,20.3387 31.3186,21.5923 31.4523,22.8601 31.5807,24.1355 31.7039,25.4116 31.8227,26.6825 31.9373,27.9413 32.0481,29.1818 32.1555,30.3977 32.26,31.5821 32.3622,32.7287 32.4623,33.8314 32.5607,34.8832 32.6577,35.878 32.7541,36.809 32.8501,37.6701 32.9535,38.5773 33.0575,39.5183 33.162,40.4857 33.2674,41.4735 33.3736,42.4744 33.4814,43.4823 33.5907,44.4902 33.7016,45.4922 33.8144,46.48 33.9295,47.4484 34.0471,48.3901 34.1672,49.2987 34.2902,50.1671 34.4164,50.9887 34.5457,51.7574 34.6785,52.4656 34.8151,53.1072 34.9556,53.6756 35.1004,54.1643 35.2497,54.5661 37.2968,58.9458 37.1103,58.4435 36.9294,57.833 36.7537,57.1225 36.583,56.3202 36.4168,55.4348 36.2552,54.474 36.0976,53.4468 35.9439,52.3617 35.7939,51.2258 35.6469,50.049 35.5031,48.8383 35.3619,47.6034 35.2232,46.3512 35.0866,45.0914 34.952,43.8312 34.819,42.58 34.6873,41.3454 34.5565,40.1361 34.4267,38.9601 34.2976,37.8262 34.1775,36.7495 34.0572,35.5855 33.9356,34.3416 33.8127,33.0267 33.6876,31.6489 33.5602,30.2153 33.4294,28.735 33.295,27.2152 33.1565,25.665 33.0132,24.0912 32.8648,22.5026 32.7107,20.9077 32.5502,19.3136 32.3831,17.7291 32.2088,16.1615 32.0266,14.6203 31.836,13.1113 31.6365,11.6452 31.4275,10.2275 31.2089,8.869 30.9797,7.5753 30.7395,6.3559 30.4879,5.2186 30.2242,4.1706 29.9481,3.2212 29.6587,2.3781 29.356,1.6492 29.0392,1.0425 28.7077,0.5659 28.3609,0.2281 27.9986,0.0363 27.6202,0 27.1258,0.225 26.6575,0.7729 26.2132,1.6219 25.7921,2.7505 25.3928,4.1367 25.0141,5.7586 24.6548,7.5957 24.3139,9.6253 23.9898,11.8255 23.6812,14.1759 23.3874,16.6537 23.1069,19.2378 22.8382,21.9059 22.5802,24.6374 22.3321,27.4097 22.092,30.2018 21.8591,32.9911 21.6319,35.7565 21.4095,38.4765 21.1904,41.1298 20.9735,43.6941 20.7575,46.1473 20.5414,48.4687 20.3235,50.636 20.1028,52.6279 19.8782,54.4228 19.6482,55.9983 19.412,57.3339 19.168,58.4069" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016591" name="A20" refUnificationXrefID="ref608;ref609;ref610;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1585" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="756.0" y="1208.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_c96dc7" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#c96dc7;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_c96dc7);stroke:none;" d="M 54.6736 46.4884 c 0.7527 -1.6262 -4.4417 -4.4524 4.2189 -4.9027 c 0.3548 -4.6548 6.1945 -4.0754 0.9101 -4.9298 l 0.1974 -7.044 l -5.3264 -18.6373 c -1.2989 -1.2253 -5.5654 2.8902 -3.3131 -5.5672 c -4.2739 -1.7789 -1.9237 -7.2091 -4.3612 -2.3976 l -6.5724 -2.3664 l -19.1973 -0.6433 c -1.5554 0.8688 1.0019 6.2387 -6.2666 1.4619 c -2.9961 3.5553 -7.3833 -0.3801 -3.6055 3.4482 l -4.2595 5.5816 l -6.5382 18.2398 c 0.3375 1.7623 6.1847 0.9655 -0.5598 6.4707 c 2.4221 3.9764 -2.6396 6.9741 2.133 4.5285 l 3.9402 5.8159 l 15.1566 11.9162 c 1.764 0.2204 2.8203 -5.6418 5.9207 2.5373 c 4.4932 -1.0977 5.752 4.6905 4.9239 -0.6492 l 6.6945 -1.9871 l 15.9055 -10.8751 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e95" name="RIP1{ub}" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m95" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="626.0" y="1146.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="32.20433869839049" height="24.68999300209937" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="33" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e96" name="A20:NAP1:TBK1:IKK-i" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m96" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="737.0" y="678.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.441176470588236" height="35.73529411764706" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Extracellular">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000202" name="p100" refUnificationXrefID="ref611;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m173" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="992.0" y="1176.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_3adc9a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#3adc9a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_3adc9a);stroke:none;" d="M 51.9614 51.9613 c 2.0554 -1.43 -4.5487 -7.9459 2.0928 -10.7024 c -2.3065 -8.6059 -8.9448 -2.7239 2.2109 -7.3301 c -3.7433 -8.9875 -14.8657 -1.1754 3.7349 -11.9673 c -0.2109 -2.4953 -9.1557 -0.0333 -8.2222 -7.1638 c -8.6062 -2.3053 -6.8311 6.3845 -5.2429 -5.5795 c -9.655 -1.2521 -8.4507 12.2866 -8.4965 -9.2181 c -2.2663 -1.0653 -4.607 7.9126 -10.315 3.5389 c -6.2997 6.3006 2.1133 9.1084 -7.4534 1.7506 c -5.9117 7.7354 6.415 13.462 -12.2315 2.7492 c -2.0554 1.43 4.5487 7.9459 -2.0928 10.7024 c 2.3065 8.6059 8.9448 2.7239 -2.2109 7.3301 c 3.7433 8.9875 14.8657 1.1754 -3.7349 11.9673 c 0.2109 2.4953 9.1557 0.0333 8.2222 7.1638 c 8.6062 2.3053 6.8311 -6.3845 5.2429 5.5795 c 9.655 1.2521 8.4507 -12.2866 8.4965 9.2181 c 2.2663 1.0653 4.607 -7.9126 10.315 -3.5389 c 6.2997 -6.3006 -2.1133 -9.1084 7.4534 -1.7506 c 5.9117 -7.7354 -6.415 -13.462 12.2315 -2.7492 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000196" name="p52" refUnificationXrefID="ref612;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m168" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="988.0" y="1224.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_23ea9a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#23ea9a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_23ea9a);stroke:none;" d="M 51.9614 51.9613 c 2.0554 -1.43 -4.5487 -7.9459 2.0928 -10.7024 c -2.3065 -8.6059 -8.9448 -2.7239 2.2109 -7.3301 c -3.7433 -8.9875 -14.8657 -1.1754 3.7349 -11.9673 c -0.2109 -2.4953 -9.1557 -0.0333 -8.2222 -7.1638 c -8.6062 -2.3053 -6.8311 6.3845 -5.2429 -5.5795 c -9.655 -1.2521 -8.4507 12.2866 -8.4965 -9.2181 c -2.2663 -1.0653 -4.607 7.9126 -10.315 3.5389 c -6.2997 6.3006 2.1133 9.1084 -7.4534 1.7506 c -5.9117 7.7354 6.415 13.462 -12.2315 2.7492 c -2.0554 1.43 4.5487 7.9459 -2.0928 10.7024 c 2.3065 8.6059 8.9448 2.7239 -2.2109 7.3301 c 3.7433 8.9875 14.8657 1.1754 -3.7349 11.9673 c 0.2109 2.4953 9.1557 0.0333 8.2222 7.1638 c 8.6062 2.3053 6.8311 -6.3845 5.2429 5.5795 c 9.655 1.2521 8.4507 -12.2866 8.4965 9.2181 c 2.2663 1.0653 4.607 -7.9126 10.315 -3.5389 c 6.2997 -6.3006 -2.1133 -9.1084 7.4534 -1.7506 c 5.9117 -7.7354 -6.415 -13.462 12.2315 -2.7492 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e98" name="LT-beta:LT-betaR" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m98" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1232.5" y="1268.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="18.793027844770883" height="36.3736022802017" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="6" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000013731" name="LT-beta" refUnificationXrefID="ref613;ref614;ref615;ref616;ref617;ref618;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1451" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1304.0" y="1188.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_9a5941" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#9a5941;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_9a5941);stroke:none;" d="M 57.0857 48.605 l 2.9143 -18.616 l -2.0162 -4.3064 c 4.6341 -6.8321 5.0494 -1.7889 1.4629 -7.8179 l -2.361 -6.1331 l -16.9115 -8.5078 l -4.7436 0.5751 c -5.105 -6.492 -0.1513 -5.3262 -7.0281 -3.7988 l -6.5977 0.3368 l -13.3662 13.3582 l -0.9154 4.6619 c -7.7893 2.8197 -5.143 -1.503 -5.8067 5.4702 l -1.7166 6.3414 l 8.6505 16.7634 l 4.1776 2.3061 c 0.2912 8.2347 -3.0273 4.3975 3.4396 7.1797 l 5.5369 3.5824 l 18.7126 -2.9978 l 3.4975 -3.2369 c 7.9689 2.2694 3.2719 4.2206 7.9324 -1.0329 l 5.1386 -4.1272 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016981" name="LT-betaR" refUnificationXrefID="ref619;ref620;ref621;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1886" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1230.0" y="1206.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="24.0" height="24.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_67ab83" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#67ab83;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_67ab83);stroke:none;" d="M 59.4969 48.5414 l 0.5031 -7.6805 l -4.521 -21.8867 l 4.018 -7.5152 l -7.4606 -2.8321 l -23.1001 -2.6397 l -6.2104 -5.9872 l -5.1139 5.93 l -9.7558 20.2552 l -7.8561 3.8148 l 4.3 6.497 l 17.0706 15.1581 l 1.3552 8.3449 l 7.7715 -1.9147 l 20.3061 -10.8872 l 8.6936 1.3427 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e97" name="p100{p}" refUnificationXrefID="ref622;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m97" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1008.0" y="1300.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_3adc9a" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#3adc9a;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_3adc9a);stroke:none;" d="M 51.9614 51.9613 c 2.0554 -1.43 -4.5487 -7.9459 2.0928 -10.7024 c -2.3065 -8.6059 -8.9448 -2.7239 2.2109 -7.3301 c -3.7433 -8.9875 -14.8657 -1.1754 3.7349 -11.9673 c -0.2109 -2.4953 -9.1557 -0.0333 -8.2222 -7.1638 c -8.6062 -2.3053 -6.8311 6.3845 -5.2429 -5.5795 c -9.655 -1.2521 -8.4507 12.2866 -8.4965 -9.2181 c -2.2663 -1.0653 -4.607 7.9126 -10.315 3.5389 c -6.2997 6.3006 2.1133 9.1084 -7.4534 1.7506 c -5.9117 7.7354 6.415 13.462 -12.2315 2.7492 c -2.0554 1.43 4.5487 7.9459 -2.0928 10.7024 c 2.3065 8.6059 8.9448 2.7239 -2.2109 7.3301 c 3.7433 8.9875 14.8657 1.1754 -3.7349 11.9673 c 0.2109 2.4953 9.1557 0.0333 8.2222 7.1638 c 8.6062 2.3053 6.8311 -6.3845 5.2429 5.5795 c 9.655 1.2521 8.4507 -12.2866 8.4965 9.2181 c 2.2663 1.0653 4.607 -7.9126 10.315 -3.5389 c 6.2997 -6.3006 -2.1133 -9.1084 7.4534 -1.7506 c 5.9117 -7.7354 -6.415 -13.462 12.2315 -2.7492 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000209" name="TRAF2" refUnificationXrefID="ref623;ref624;ref625;ref626;ref627;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m180" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1092.0" y="1140.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_963d32" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#963d32;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_963d32);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000016965" name="TRAF5" refUnificationXrefID="ref628;ref629;ref630;ref631;ref632;ref633;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1874" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1148.0" y="1228.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_8b3d18" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#8b3d18;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_8b3d18);stroke:none;" d="M 52.8059 47.4706 c -7.7431 -3.717 11.6089 -12.322 7.1941 -19.4363 l -0.9501 -11.2137 l -6.244 -1.3273 c -5.8784 6.3193 -7.9683 -15.0039 -16.0049 -12.9444 l -10.8101 -2.5489 l -3.1742 5.6121 c 4.11 7.6223 -16.5332 3.0487 -17.0856 11.4363 l -5.7311 9.6382 l 4.2819 4.7956 c 8.4188 -1.6086 -2.2498 16.888 5.4452 20.0122 l 7.2681 8.5056 l 5.8205 -2.6483 c 1.0928 -8.6166 15.143 7.3886 20.4506 0.9322 l 10.2227 -4.3818 l -0.6848 -6.4321 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000203" name="NIK" refUnificationXrefID="ref634;ref635;ref636;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m174" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1063.0" y="1215.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_29c6f5" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#29c6f5;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_29c6f5);stroke:none;" d="M 52.2502 49.4208 c 0.3387 -10.6061 -6.371 -7.3321 -10.0838 -13.5898 c -1.9304 -9.2015 -0.4122 -1.8351 10.3075 -1.9126 c 1.6916 -0.2361 10.1922 -0.1926 7.5261 -9.2089 c 0.6449 -9.4218 10.4286 -0.2985 -7.7498 -9.5255 c -9.7455 -3.6072 -8.7784 3.9392 -15.7374 5.6213 c -9.1423 -0.9633 -1.8317 -0.1657 1.4091 -10.6297 c 0.3034 -1.7204 2.9706 -9.9859 -6.2269 -10.1756 c -8.5511 -3.5397 2.9454 -10.2486 -11.2414 4.6041 c -6.3616 8.3766 0.9458 9.7668 0.3578 17.0638 c -3.72 8.6061 -0.7199 1.7329 -9.4367 -4.6568 c -1.5042 -0.8272 -8.3565 -5.9792 -11.3747 2.9202 c -5.9296 7.2343 -8.6084 -6.0356 0.802 12.3708 c 5.814 8.7843 9.3628 2.0967 15.9586 4.9247 c 6.8433 6.2824 1.3868 1.2367 -7.2411 7.7516 c -1.2329 1.2094 -8.1353 6.2909 -0.8027 11.9801 c 4.8862 8.0106 -8.2654 6.5186 11.7371 3.0416 c 9.9548 -2.9475 4.8408 -8.4707 9.5051 -14.0204 c 7.9494 -4.7233 1.577 -0.9685 4.9615 9.4476 c 0.7422 1.5747 3.3287 9.8671 10.8782 4.4842 c 8.9496 -2.2834 3.4998 10.0641 6.4517 -10.491 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e99" name="NIK{active}" refUnificationXrefID="ref637;ref638;ref639;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m99" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1075.0" y="1267.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_29c6f5" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#29c6f5;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_29c6f5);stroke:none;" d="M 52.2502 49.4208 c 0.3387 -10.6061 -6.371 -7.3321 -10.0838 -13.5898 c -1.9304 -9.2015 -0.4122 -1.8351 10.3075 -1.9126 c 1.6916 -0.2361 10.1922 -0.1926 7.5261 -9.2089 c 0.6449 -9.4218 10.4286 -0.2985 -7.7498 -9.5255 c -9.7455 -3.6072 -8.7784 3.9392 -15.7374 5.6213 c -9.1423 -0.9633 -1.8317 -0.1657 1.4091 -10.6297 c 0.3034 -1.7204 2.9706 -9.9859 -6.2269 -10.1756 c -8.5511 -3.5397 2.9454 -10.2486 -11.2414 4.6041 c -6.3616 8.3766 0.9458 9.7668 0.3578 17.0638 c -3.72 8.6061 -0.7199 1.7329 -9.4367 -4.6568 c -1.5042 -0.8272 -8.3565 -5.9792 -11.3747 2.9202 c -5.9296 7.2343 -8.6084 -6.0356 0.802 12.3708 c 5.814 8.7843 9.3628 2.0967 15.9586 4.9247 c 6.8433 6.2824 1.3868 1.2367 -7.2411 7.7516 c -1.2329 1.2094 -8.1353 6.2909 -0.8027 11.9801 c 4.8862 8.0106 -8.2654 6.5186 11.7371 3.0416 c 9.9548 -2.9475 4.8408 -8.4707 9.5051 -14.0204 c 7.9494 -4.7233 1.577 -0.9685 4.9615 9.4476 c 0.7422 1.5747 3.3287 9.8671 10.8782 4.4842 c 8.9496 -2.2834 3.4998 10.0641 6.4517 -10.491 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000194" name="RelB" refUnificationXrefID="ref640;ref641;ref642;ref643;ref644;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m167" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="835.0" y="1315.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_2dd889" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#2dd889;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_2dd889);stroke:none;" d="M 60 48.5413 c 2.0277 -2.2844 -8.0978 -7.7581 -0.9395 -12.9896 c -5.593 -9.2122 -11.7316 -0.3774 0.299 -9.137 c -7.4593 -9.2084 -18.4088 3.2383 0.6404 -14.956 c -1.6576 -2.54 -10.2606 4.9275 -13.2798 -3.164 c -10.9404 2.2124 -4.0025 10.4947 -9.0443 -3.0939 c -11.5133 3.9016 -2.4503 17.6514 -14.7578 -5.2008 c -3.0524 0.7146 1.7564 10.8036 -7.2677 11.0338 c -1.1684 10.5796 9.2576 6.8636 -5.889 7.2248 c 0.3434 11.6199 16.8945 7.6708 -9.7614 11.7412 c -0.2289 2.9817 11.3463 1.7496 8.7881 9.9835 c 10.2183 4.326 9.7241 -6.2531 5.4049 7.5591 c 11.7256 3.28 12.8915 -12.911 8.7251 12.4577 c 2.9112 1.1285 5.2556 -9.7221 12.6988 -4.8637 c 7.4835 -7.9058 -3.2481 -10.7278 9.2294 -2.5529 c 6.9031 -9.5926 -8.9268 -15.65 15.1537 -4.0421 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e100" name="p52:RelB" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m100" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="820.5" y="1258.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.833527745375772" height="24.28595234127645" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e101" name="p52:RelB" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m101" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="668.5" y="1050.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.833527745375772" height="24.28595234127645" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="12" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e102" name="TANK:TBK1:IKK-i:IKK" type="cso30:c:Complex">
<csml:entitySimulationProperty>
<csml:variable variableID="m102" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="582.0" y="312.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.676470588235297" height="32.794117647058826" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="31" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e103" name="TANK{p}" refUnificationXrefID="ref645;ref646;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m103" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="588.0" y="1260.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_62bb53" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#62bb53;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_62bb53);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e104" name="TANK{p}{ub}" refUnificationXrefID="ref647;ref648;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m104" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="664.0" y="1320.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_62bb53" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#62bb53;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_62bb53);stroke:none;" d="M 60 48.5415 c 0.8103 -7.397 2.3214 -19.8066 -3.5398 -20.1631 c 9.5776 -10.3066 -2.5463 -7.5712 3.5398 -16.9193 c -7.1467 -3.0187 -19.0893 -8.2203 -21.2568 -3.0292 c -7.3468 -11.8479 -8.3579 -0.0366 -15.8253 -8.4299 c -5.2269 5.5315 -14.1193 14.7258 -9.5978 18.2907 c -14.118 2.984 -2.6193 7.5483 -13.3201 11.7096 c 3.9166 6.4373 10.3631 17.3217 15.3246 14.3334 c -1.3787 13.6923 6.7392 4.7019 7.5932 15.6663 c 7.6473 -1.5531 20.5241 -4.0206 19.0691 -9.4324 c 13.2666 5.4782 6.7842 -4.643 18.013 -2.0267 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e12" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m12" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="983.2933077958774" y="408.0"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="213.44410520926158" height="356.34312479851314" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20090" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_EndosomeLumen">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e11" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m11" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="983.2933077958774" y="408.0"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="213.44410520926158" height="356.34312479851314" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20048" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_EndosomeMembrane">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e6" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m6" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="983.2933077958774" y="408.0"/>
<csml:shape shapeID="default" depth="70" visible="true">
<csml:image width="213.44410520926158" height="356.34312479851314" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20010" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Endosome">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e1" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m1" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="336.75" y="64.99690800911759"/>
<csml:shape shapeID="default" depth="81" visible="true">
<csml:image width="941.0979797868855" height="1366.4742666505558" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e3" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m3" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="355.57195959573767" y="83.81886760485528"/>
<csml:shape shapeID="default" depth="71" visible="true">
<csml:image width="903.4540605954102" height="1328.8303474590814" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20065" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_IntegralToPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e4" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m4" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="390.3925848478526" y="116.75729689739609"/>
<csml:shape shapeID="default" depth="71" visible="true">
<csml:image width="833.8128100911807" height="1262.9534888739984" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20066" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_InternalSideOfPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e2" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m2" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="336.75" y="64.99690800911759"/>
<csml:shape shapeID="default" depth="71" visible="true">
<csml:image width="941.0979797868855" height="1366.4742666505558" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20064" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_PlasmaMembrane_ExternalSideOfPlasmaMembrane_">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e51" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m51" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="533.7884339476876" y="756.454876574375"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="230.0309397227219" height="345.778992194665" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20021" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearPore">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e59" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m59" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="491.2986425339366" y="748.0"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="393.39686188248913" height="356.76773135339386" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20022" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearEnvelope">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e56" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m56" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="498.8489707735604" y="751.8047022243961"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="381.67554011317856" height="345.778992194665" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20063" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e53" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m53" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="497.1593034185919" y="753.4943695793643"/>
<csml:shape shapeID="default" depth="60" visible="true">
<csml:image width="381.67554011317856" height="345.778992194665" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20113" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearLumen">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e57" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m57" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="778.4710258820477" y="894.5165221163834"/>
<csml:shape shapeID="default" depth="40" visible="true">
<csml:image width="24.57727440975765" height="22.248901044622762" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20117" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearBody">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e60" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m60" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="584.0200693878555" y="906.5446318174152"/>
<csml:shape shapeID="default" depth="30" visible="true">
<csml:image width="12.458300579849025" height="5.998441019927318" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20043" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Chromatin">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e62" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m62" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="601.4928220529455" y="938.5780117034135"/>
<csml:shape shapeID="default" depth="30" visible="true">
<csml:image width="6.656286729557909" height="6.65628672955792" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20115" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearCentromere">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e61" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m61" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="583.6040514672582" y="888.6558612317286"/>
<csml:shape shapeID="default" depth="40" visible="true">
<csml:image width="42.6418368612304" height="76.75530635021478" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20114" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearChromosome">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e52" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m52" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="496.4267208080099" y="752.7617869687824"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="383.14070533434256" height="347.2441574158286" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20110" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearInnerMembrane">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e58" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m58" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="714.0037561508393" y="997.0780875978518"/>
<csml:shape shapeID="default" depth="40" visible="true">
<csml:image width="69.59534800528206" height="63.002104510044916" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20062" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleolus">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e54" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m54" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="491.2986425339366" y="748.0"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="393.39686188248913" height="356.76773135339386" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20111" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearOuterMembrane">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e50" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m50" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="491.2986425339366" y="748.0"/>
<csml:shape shapeID="default" depth="50" visible="true">
<csml:image width="393.39686188248913" height="356.76773135339386" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20112" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_NuclearEnvelopeLumen">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="e55" name="" type="cso30:c:EntityBiologicalCompartment">
<csml:entitySimulationProperty>
<csml:variable variableID="m55" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="0"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="true"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="491.2986425339366" y="748.0"/>
<csml:shape shapeID="default" depth="70" visible="true">
<csml:image width="393.39686188248913" height="356.76773135339386" filePath="system" fileType="resourceFile" fileFormat="svg" resourceID="20025" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_Nucleus">
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
<csml:property key="probeID" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">








</csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000061519" name="NCKAP1(NAP1)" refUnificationXrefID="ref649;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m36417" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="713.0" y="201.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_6fa5dc" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#6fa5dc;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_6fa5dc);stroke:none;" d="M 59.9998 48.5412 c 2.0757 -2.0433 1.2934 -1.7833 -6.3986 -5.4923 l -0.1554 -13.1642 c 1.5644 -4.3694 0.4392 -4.4975 4.2129 -3.9292 l 2.3411 -14.4964 c -1.4019 -2.5088 -1.3837 -1.7209 -7.4695 4.0904 l -13.2123 -3.9273 c -3.8859 -2.7653 -4.3617 -1.7872 -2.6273 -5.0248 l -13.7729 -6.5973 c -2.9421 0.4929 -2.1485 0.7198 1.7823 8.0202 l -8.0102 10.737 c -3.9661 2.6604 -3.1349 3.393 -5.8366 0.8237 l -10.8533 10.4191 c -0.4162 2.8134 0.0559 2.1657 8.571 0.8664 l 8.2617 10.5632 c 1.4348 4.4094 2.4242 3.8841 -0.9799 5.5338 l 7.0651 13.0367 c 2.6847 1.2459 2.183 0.6188 3.5149 -7.4849 l 13.1161 -4.2086 c 4.8528 0.0649 4.6332 -0.9924 5.2311 2.5964 l 15.2199 -2.3621 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000065" name="RIP1" refUnificationXrefID="ref650;ref651;ref652;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m21" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="973.0" y="273.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_aa373f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#aa373f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_aa373f);stroke:none;" d="M 57.5627 48.2396 c -1.6543 -3.8402 3.8436 -5.8272 2.4373 -6.1846 l -2.2156 -27.1125 l -0.2217 -3.5545 c -4.2186 0.3633 -4.4377 -5.4021 -5.2173 -4.1949 l -26.8586 -6.3025 l -3.5 -0.8906 c -0.9527 4.0647 -6.5864 2.4885 -5.6618 3.5922 l -14.3839 23.2176 l -1.9412 3.0041 c 3.6296 2.149 0.3671 6.94 1.7181 6.4147 l 17.9689 20.6517 l 2.3001 2.7471 c 3.1961 -2.7368 6.8132 1.8007 6.7236 0.3725 l 25.4891 -10.454 l 3.3628 -1.3061 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000008179" name="PKR(DAI)" refUnificationXrefID="ref653;ref654;ref655;ref656;ref657;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m1055" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1069.0" y="1041.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="29.5" height="29.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_cf8fbc" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#cf8fbc;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_cf8fbc);stroke:none;" d="M 60 48.5409 c 4.9597 -5.4931 13.9817 -9.4903 -14.709 -11.4335 l 14.709 -25.6484 c -3.9607 -6.1835 -5.1697 -15.5791 -15.9786 9.7711 l -21.1031 -21.2302 c -7.4073 1.6713 -17.1768 -0.1382 4.8333 17.4724 l -27.7516 12.5276 c -0.6176 7.2162 -5.4462 15.4933 18.9664 1.0276 l 3.9519 28.9724 c 7.0259 2.7885 13.8109 9.7142 6.8879 -16.8376 l 30.1938 5.3786 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000200" name="p50" refUnificationXrefID="ref658;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m172" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="554.0" y="474.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="27.5" height="27.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_21b563" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#21b563;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_21b563);stroke:none;" d="M 51.9614 51.9613 c 2.0554 -1.43 -4.5487 -7.9459 2.0928 -10.7024 c -2.3065 -8.6059 -8.9448 -2.7239 2.2109 -7.3301 c -3.7433 -8.9875 -14.8657 -1.1754 3.7349 -11.9673 c -0.2109 -2.4953 -9.1557 -0.0333 -8.2222 -7.1638 c -8.6062 -2.3053 -6.8311 6.3845 -5.2429 -5.5795 c -9.655 -1.2521 -8.4507 12.2866 -8.4965 -9.2181 c -2.2663 -1.0653 -4.607 7.9126 -10.315 3.5389 c -6.2997 6.3006 2.1133 9.1084 -7.4534 1.7506 c -5.9117 7.7354 6.415 13.462 -12.2315 2.7492 c -2.0554 1.43 4.5487 7.9459 -2.0928 10.7024 c 2.3065 8.6059 8.9448 2.7239 -2.2109 7.3301 c 3.7433 8.9875 14.8657 1.1754 -3.7349 11.9673 c 0.2109 2.4953 9.1557 0.0333 8.2222 7.1638 c 8.6062 2.3053 6.8311 -6.3845 5.2429 5.5795 c 9.655 1.2521 8.4507 -12.2866 8.4965 9.2181 c 2.2663 1.0653 4.607 -7.9126 10.315 -3.5389 c 6.2997 -6.3006 -2.1133 -9.1084 7.4534 -1.7506 c 5.9117 -7.7354 -6.415 -13.462 12.2315 -2.7492 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000000206" name="TNFR1" refUnificationXrefID="ref659;ref660;ref661;ref662;ref663;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m177" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="362.0" y="958.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="27.0" height="27.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_32c3a0" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#32c3a0;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_32c3a0);stroke:none;" d="M 42.8702 36.6731 c 4.7583 -1.2596 17.5766 -19.2218 17.1298 2.9883 l -4.3431 -5.3554 c 15.0908 -0.8904 21.3917 -1.9272 -12.7867 -15.8887 c 0.3058 -5.0455 -12.3365 -23.1388 8.0554 -15.8388 l -6.2918 2.5947 c 3.841 -15.0412 4.8283 -21.5274 -18.6384 7.603 c -4.5699 -1.8587 -25.201 4.9212 -12.1514 -12.7762 l 0.4536 6.9587 c -12.7167 -8.4064 -18.4071 -11.3773 1.2683 20.5871 c -3.1301 3.8973 -3.2384 26.1805 -15.5659 7.942 l 6.5728 1.7066 c -11.7001 9.846 -16.2045 14.4956 19.4227 5.1209 c 2.6347 4.2665 23.1993 11.2589 2.5321 17.6847 l 3.6085 -5.9046 c 5.4861 14.4909 8.3917 20.3363 10.7353 -17.4223 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000038687" name="(TNF-alpha)3:(TNFR1)3" refUnificationXrefID="ref664;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m16874" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="360.0" y="1080.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="32.0" height="32.0" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_409e59" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#409e59;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_409e59);stroke:none;" d="M 24.3953 52.0404 c -2.8148 -4.9494 3.3928 -8.4377 5.6047 -6.0702 l -5.6047 -8.8782 c -5.68 1.0904 -7.152 -5.765 -4.1674 -7.092 l -10.3606 2.4728 c -0.6956 5.6232 -7.813 4.8748 -8.1804 1.6868 l -0.7986 10.4065 c 5.2502 2.385 2.3233 8.7777 -0.8882 8.1346 l 9.867 3.9588 c 3.9402 -4.1492 9.2488 0.5502 7.6314 3.3404 l 6.8968 -7.9598 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_409e59" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#409e59;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_409e59);stroke:none;" d="M 24.3953 34.5404 c -2.8148 -4.9494 3.3928 -8.4377 5.6047 -6.0702 l -5.6047 -8.8782 c -5.68 1.0904 -7.152 -5.765 -4.1674 -7.092 l -10.3606 2.4728 c -0.6956 5.6232 -7.813 4.8748 -8.1804 1.6868 l -0.7986 10.4065 c 5.2502 2.385 2.3233 8.7777 -0.8882 8.1346 l 9.867 3.9588 c 3.9402 -4.1492 9.2488 0.5502 7.6314 3.3404 l 6.8968 -7.9598 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_409e59" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#409e59;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_409e59);stroke:none;" d="M 39.3953 22.0404 c -2.8148 -4.9494 3.3928 -8.4377 5.6047 -6.0702 l -5.6047 -8.8782 c -5.68 1.0904 -7.152 -5.765 -4.1674 -7.092 l -10.3606 2.4728 c -0.6956 5.6232 -7.813 4.8748 -8.1804 1.6868 l -0.7986 10.4065 c 5.2502 2.385 2.3233 8.7777 -0.8882 8.1346 l 9.867 3.9588 c 3.9402 -4.1492 9.2488 0.5502 7.6314 3.3404 l 6.8968 -7.9598 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_32c3a0" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#32c3a0;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_32c3a0);stroke:none;" d="M 51.4351 30.8366 c 2.3792 -0.6298 8.7883 -9.6109 8.5649 1.4942 l -2.1716 -2.6777 c 7.5454 -0.4452 10.6958 -0.9636 -6.3934 -7.9444 c 0.1529 -2.5228 -6.1682 -11.5694 4.0277 -7.9194 l -3.1459 1.2974 c 1.9205 -7.5206 2.4142 -10.7637 -9.3192 3.8015 c -2.285 -0.9294 -12.6005 2.4606 -6.0757 -6.3881 l 0.2268 3.4794 c -6.3584 -4.2032 -9.2036 -5.6886 0.6342 10.2936 c -1.565 1.9486 -1.6192 13.0902 -7.783 3.971 l 3.2864 0.8533 c -5.85 4.923 -8.1022 7.2478 9.7114 2.5604 c 1.3174 2.1332 11.5996 5.6294 1.266 8.8424 l 1.8042 -2.9523 c 2.743 7.2454 4.1958 10.1682 5.3676 -8.7112 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_32c3a0" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#32c3a0;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_32c3a0);stroke:none;" d="M 51.4351 48.3366 c 2.3792 -0.6298 8.7883 -9.6109 8.5649 1.4942 l -2.1716 -2.6777 c 7.5454 -0.4452 10.6958 -0.9636 -6.3934 -7.9444 c 0.1529 -2.5228 -6.1682 -11.5694 4.0277 -7.9194 l -3.1459 1.2974 c 1.9205 -7.5206 2.4142 -10.7637 -9.3192 3.8015 c -2.285 -0.9294 -12.6005 2.4606 -6.0757 -6.3881 l 0.2268 3.4794 c -6.3584 -4.2032 -9.2036 -5.6886 0.6342 10.2936 c -1.565 1.9486 -1.6192 13.0902 -7.783 3.971 l 3.2864 0.8533 c -5.85 4.923 -8.1022 7.2478 9.7114 2.5604 c 1.3174 2.1332 11.5996 5.6294 1.266 8.8424 l 1.8042 -2.9523 c 2.743 7.2454 4.1958 10.1682 5.3676 -8.7112 z" /&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_32c3a0" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#32c3a0;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_32c3a0);stroke:none;" d="M 36.4351 37.0866 c 2.3792 -0.6298 8.7883 -9.6109 8.5649 1.4942 l -2.1716 -2.6777 c 7.5454 -0.4452 10.6958 -0.9636 -6.3934 -7.9444 c 0.1529 -2.5228 -6.1682 -11.5694 4.0277 -7.9194 l -3.1459 1.2974 c 1.9205 -7.5206 2.4142 -10.7637 -9.3192 3.8015 c -2.285 -0.9294 -12.6005 2.4606 -6.0757 -6.3881 l 0.2268 3.4794 c -6.3584 -4.2032 -9.2036 -5.6886 0.6342 10.2936 c -1.565 1.9486 -1.6192 13.0902 -7.783 3.971 l 3.2864 0.8533 c -5.85 4.923 -8.1022 7.2478 9.7114 2.5604 c 1.3174 2.1332 11.5996 5.6294 1.266 8.8424 l 1.8042 -2.9523 c 2.743 7.2454 4.1958 10.1682 5.3676 -8.7112 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
<csml:entity id="MO000019479" name="protein remnants" refUnificationXrefID="ref665;" type="cso30:c:Protein">
<csml:entitySimulationProperty>
<csml:variable variableID="m360980" type="csml-variable:Double">
<csml:parameter key="csml-variable:parameter:initialValue" value="10"/>
<csml:parameter key="csml-variable:parameter:maximumValue" value="infinite"/>
<csml:parameter key="csml-variable:parameter:minimumValue" value="0"/>
<csml:parameter key="csml-variable:parameter:global" value="false"/>
</csml:variable>
</csml:entitySimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="423.0" y="879.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="26.5" height="26.5" filePath="" fileType="internal" fileFormat="svg" outlineColor="0 0 0 0">&lt;svg contentScriptType="text/ecmascript" width="60.0" xmlns:xlink="http://www.w3.org/1999/xlink" zoomAndPan="magnify" style="overflow:visible;enable-background:new 0 0 60.0 60.0" contentStyleType="text/css" height="60.0" viewBox="0 0 60.0 60.0" preserveAspectRatio="xMidYMid meet" xmlns="http://www.w3.org/2000/svg" version="1.0"&gt;
&lt;defs&gt;
&lt;radialGradient id="MO_ab834f" gradientUnits="objectBoundingBox" spreadMethod="pad" xlink:show="other" xlink:type="simple" r="50%" cx="50%" fx="50%" fy="50%" cy="50%" xlink:actuate="onLoad"&gt;
&lt;stop offset="0%" style="stop-color:white;stop-opacity:1;"/&gt;
&lt;stop offset="100%" style="stop-color:#ab834f;stop-opacity:1;"/&gt;
&lt;/radialGradient&gt;
&lt;/defs&gt;
&lt;path style="fill:url(#MO_ab834f);stroke:none;" d="M 60 30 l -34.9569 -27.9966 l -17.8713 -2.0034 l -7.1718 43.775 l 7.1718 16.225 l 42.128 -15.7784 l 10.7001 -14.2216 z" /&gt;
&lt;/svg&gt;</csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refCellComponentID="cso30:i:CC_CellComponent">
<csml:property key="probeID" value=""/>
<csml:property key="extension" value=""/>
<csml:property key="accession" value=""/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:entity>
</csml:entitySet>
<csml:processSet>
<csml:process id="p1" name="p1" type="cso30:c:ProcessBiological">
<csml:connector id="c1" name="c1" refID="MO000016882" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="853.0" y="38.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="853.0 38.0 892.0 38.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="892.0 35.0 892.0 41.0 900.0 38.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c2" name="c2" refID="MO000019394" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="853.0" y="52.471529031050636"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="853.0 92.0 895.1637023668793 52.471529031050636" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="893.1118789802354 50.28291741863038 897.2155257535234 54.660140643470896 901.0 47.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c3" name="c3" refID="e5" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="912.0" y="47.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="912.0 47.0 916.6482894791133 74.11502196149387" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="919.6051562435531 73.60813051616132 913.6914227146735 74.6219134068264 918.0000000000001 82.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="900.0" y="28.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,16822173
These include lipopolysaccharide (LPS), a component of the outer membrane of Gram-negative bacteria, and double-stranded (ds) RNA, a product of many replicating viruses, which trigger the TLR4- or the TLR3-dependent signaling cascade, respectively</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p2" name="p2" type="cso30:c:ProcessBiological">
<csml:connector id="c4" name="c4" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1306.2221365379228" y="538.9969153652218"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1307.0 567.0 1306.2221365379228 538.9969153652218" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1303.2232932759646 539.0802165669428 1309.220979799881 538.9136141635007 1306.0 531.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c5" name="c5" refID="MO000019398" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1253.0" y="529.2333107865676"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1253.0 545.0 1288.682507167242 529.2333107865676" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1287.470015622279 526.4892509742833 1289.8949987122048 531.9773705988518 1296.0 526.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c6" name="c6" refID="MO000041446" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1249.6307940059135" y="504.4022870018617"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1296.0 519.0 1249.6307940059135 504.4022870018617" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1248.7299363802153 507.26383475407926 1250.5316516316116 501.5407392496441 1242.0 502.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1296.0" y="512.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






PMID: 18353649,16822173
These include lipopolysaccharide (LPS), a component of the outer membrane of Gram-negative bacteria, and double-stranded (ds) RNA, a product of many replicating viruses, which trigger the TLR4- or the TLR3-dependent signaling cascade, respectively</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p3" name="p3" type="cso30:c:ProcessBiological">
<csml:connector id="c7" name="c7" refID="e5" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="932.0" y="109.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="932.0 109.0 988.6851822609893 153.08847509188064" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="990.5270041015341 150.72041843975165 986.8433604204446 155.45653174400962 994.9999999999999 158.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c8" name="c8" refID="MO000041125" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1006.0" y="184.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1006.0 207.0 1006.0 184.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1003.0 184.0 1009.0 184.0 1006.0 176.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c9" name="c9" refID="e13" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1006.0" y="117.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1006.0 155.0 1006.0 117.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1003.0 117.0 1009.0 117.0 1006.0 109.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="995.0" y="155.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,12471095,12539043
Both pathways requires Toll&#8211;IL-1 receptor (TIR) domain-containing adaptor inducing IFN-&#946; (TRIF) [also called TIR-containing adapter molecule-1 (TICAM-1)] and one of the five TIR-domain-containing adaptors identified so far</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p4" name="p3" type="cso30:c:ProcessBiological">
<csml:connector id="c10" name="c10" refID="MO000041446" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1173.6568542494924" y="441.65685424949237"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1218.0 486.0 1173.6568542494924 441.65685424949237" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1171.5355339059329 443.77817459305203 1175.7781745930522 439.53553390593277 1168.0000000000002 436.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c11" name="c11" refID="MO000041125" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1014.0" y="229.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1014.0 229.0 1145.2781264516748 408.54214352949634" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1147.6998226281137 406.7714409488744 1142.8564302752359 410.31284611011836 1150.0 415.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c12" name="c12" refID="e14" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1168.0" y="417.1676869865141"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1168.0 425.0 1221.085677091404 417.1676869865141" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1220.647794471461 414.19981589579066 1221.5235597113467 420.1355580772376 1228.9999999999998 416.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1147.0" y="415.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">






PMID: 18353649,12471095,12539043
Both pathways requires Toll&#8211;IL-1 receptor (TIR) domain-containing adaptor inducing IFN-&#946; (TRIF) [also called TIR-containing adapter molecule-1 (TICAM-1)] and one of the five TIR-domain-containing adaptors identified so far

</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p5" name="p5" type="cso30:c:ProcessBiological">
<csml:connector id="c14" name="c14" refID="e13" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1019.0" y="102.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1019.0 102.0 1073.0536468300227 150.6482821470204" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1075.06054102489 148.4183997082789 1071.0467526351554 152.8781645857619 1079.0 156.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c13" name="c13" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1093.4632633294639" y="183.86504039586868"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1100.0 219.0 1093.4632633294639 183.86504039586868" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1090.5138731810132 184.41376414441766 1096.4126534779148 183.3163166473197 1092.0 176.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c15" name="c15" refID="e15" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1087.301672079202" y="109.99431009885343"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1089.0 155.0 1087.301672079202 109.99431009885343" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1084.303805792132 110.10743712855418 1090.299538366272 109.88118306915267 1087.0 102.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1079.0" y="155.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,16621716,16582590,16306937,16306936
TRAF3, which connects TRIF to the TBK1 and IKK-var epsilon kinase complexes for subsequent IRF3 phosphorylation, lies downstream of TRIF </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p6" name="p6" type="cso30:c:ProcessBiological">
<csml:connector id="c16" name="c16" refID="e16" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1318.9985211202388" y="622.1538177138508"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1363.0 623.0 1318.9985211202388 622.1538177138508" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1318.9408394775448 625.1532631339403 1319.0562027629328 619.1543722937612 1311.0 622.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c17" name="c17" refID="MO000042012" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1121.0" y="577.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1121.0 577.0 1284.2415362312206 618.0490412745174" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1284.9731457532766 615.1396173612252 1283.5099267091648 620.9584651878098 1292.0000000000002 620.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c20" name="c20" refID="e17" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1104.9895013078128" y="611.4097180157853"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1292.0 621.0 1104.9895013078128 611.4097180157853" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1104.8358570518933 614.4057810062151 1105.1431455637323 608.4136550253555 1097.0 611.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1292.0" y="612.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649, 16424890
The TLR7, TLR8 and TLR9 receptors, which, in contrast to TLR4, are not localized on the cell surface but rather in endosomal compartments, sense viral nucleic acids in plasmacytoid dendritic cells and also elicit IFN gene induction through IRF7 phosphorylation
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p7" name="p6" type="cso30:c:ProcessBiological">
<csml:connector id="c18" name="c18" refID="e16" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1317.3548626638176" y="631.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1379.0 631.0 1317.3548626638176 678.1403991394336" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1319.1772129865299 680.5234726383652 1315.532512341105 675.757325640502 1311.0 683.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c19" name="c19" refID="MO000042007" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1034.0" y="663.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1034.0 663.0 1284.0403157431858 688.1978612764451" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1284.341117764519 685.2129796801398 1283.7395137218527 691.1827428727504 1292.0 689.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c21" name="c21" refID="e18" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1076.9842810017353" y="691.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1292.0 691.0 1076.9842810017353 704.498744690474" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1077.1722517428075 707.4928500661248 1076.796310260663 701.5046393148233 1068.9999999999998 705.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1292.0" y="680.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649, 16424890
The TLR7, TLR8 and TLR9 receptors, which, in contrast to TLR4, are not localized on the cell surface but rather in endosomal compartments, sense viral nucleic acids in plasmacytoid dendritic cells and also elicit IFN gene induction through IRF7 phosphorylation
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p8" name="p6" type="cso30:c:ProcessBiological">
<csml:connector id="c22" name="c22" refID="e16" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1198.5720815054283" y="559.5813914223052"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1367.0 617.0 1198.5720815054283 559.5813914223052" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1197.6040597220638 562.4209219868408 1199.5401032887926 556.7418608577696 1190.9999999999998 557.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c23" name="c23" refID="MO000042126" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1073.0" y="467.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1073.0 467.0 1165.74689205812 541.0101461877928" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1167.6180872376976 538.6652307095878 1163.8756968785422 543.3550616659977 1171.9999999999998 546.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c24" name="c24" refID="e19" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1074.3531602401445" y="508.15135438863337"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1172.0 550.0 1074.3531602401445 508.15135438863337" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1073.171402344407 510.90878947868754 1075.534918135882 505.3939192985792 1067.0 505.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1172.0" y="544.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649, 16424890
The TLR7, TLR8 and TLR9 receptors, which, in contrast to TLR4, are not localized on the cell surface but rather in endosomal compartments, sense viral nucleic acids in plasmacytoid dendritic cells and also elicit IFN gene induction through IRF7 phosphorylation
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p9" name="p9" type="cso30:c:ProcessBiological">
<csml:connector id="c25" name="c25" refID="MO000019326" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="652.0" y="344.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="652.0 344.0 710.0936256470474 377.9624273013508" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="711.6077154090408 375.37253691899355 708.5795358850538 380.55231768370805 717.0 382.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c26" name="c26" refID="MO000019331" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="734.7950595939388" y="318.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="754.0 318.0 734.7950595939388 369.5041583617095" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="737.6060002082978 370.55230570943655 731.9841189795799 368.4560110139824 732.0 377.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c27" name="c27" refID="MO000016608" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="744.2341704273326" y="265.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="881.0 265.0 744.2341704273326 374.98650629969757" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="746.1142305649461 377.3243202099473 742.3541102897193 372.6486923894479 738.0000000000001 380.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c28" name="c28" refID="e20" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="738.0" y="392.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="738.0 392.0 800.6852048828275 419.7605907338236" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="801.8999833576437 417.0175425648839 799.4704264080113 422.50363890276327 808.0 423.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="717.0" y="377.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649,10759890 
TANK constitutively binds to IKK-epsilon and TBK1 through its N-terminal domain</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p10" name="p10" type="cso30:c:ProcessBiological">
<csml:connector id="c30" name="c30" refID="MO000019331" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="760.0" y="215.86804919170356"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="760.0 295.0 774.5530024475028 215.86804919170356" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="771.6024840006139 215.3254251095171 777.5035208943916 216.41067327389 776.0 208.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c275" name="c275" refID="MO000061519" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="736.0" y="203.23048155891163"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="736.0 210.0 759.317230185971 203.23048155891163" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="758.4807996013791 200.34944287865076 760.1536607705629 206.1115202391725 767.0 201.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c31" name="c31" refID="e22" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="782.0" y="208.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="782.0 208.0 802.1365119069404 260.5300310615836" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="804.9377502588466 259.45622302668625 799.3352735550343 261.60383909648095 805.0 268.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="767.0" y="187.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,14560022
NAP1, a candidate scaffold protein that was initially identified as a TBK1-interacting protein, shares several structural features with TANK

PMID: 18353649,15611223,17142768
Similarly to TANK, NAP1 constitutively binds to TBK1 and is also required for IRF3 phosphorylation through both the TLR3- and the RIG-I-dependent pathways</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p11" name="p11" type="cso30:c:ProcessBiological">
<csml:connector id="c32" name="c32" refID="e23" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="920.897233121606" y="317.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="951.0 317.0 920.897233121606 344.59420297186125" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="922.924407007158 346.8056653924635 918.870059236054 342.382740551259 915.0000000000001 350.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c33" name="c33" refID="MO000016608" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="893.0" y="266.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="893.0 266.0 903.8416065590625 340.08431148692716" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="906.8099897514647 339.6499139465756 900.8732233666601 340.51870902727876 904.9999999999999 348.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c34" name="c34" refID="MO000019331" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="770.0" y="310.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="770.0 310.0 888.4472660113772 351.3625373373064" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="889.4363145098873 348.53026209157287 887.4582175128671 354.1948125830399 895.9999999999999 354.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c35" name="c35" refID="e24" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="892.6518879601005" y="367.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="903.0 367.0 892.6518879601005 396.45231888279096" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="895.4822683790538 397.44677686782865 889.8215075411471 395.4578608977533 890.0 404.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="896.0" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649,17568778
SINTBAD is the most recently identified scaffold protein that constitutively binds to TBK1 and IKK-epsilon</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p12" name="p12" type="cso30:c:ProcessBiological">
<csml:connector id="c37" name="c37" refID="MO000019331" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="721.8421713081511" y="272.4652570302059"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="747.0 296.0 721.8421713081511 272.4652570302059" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="719.7926999218239 274.6560712707626 723.8916426944784 270.27444278964924 716.0 267.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c38" name="c38" refID="MO000016608" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="723.9994123696188" y="256.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="881.0 256.0 723.9994123696188 257.9030374258228" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="724.0357733349352 260.9028170644298 723.9630514043023 254.90325778721578 716.0000000000001 258.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c276" name="c276" refID="e15" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="723.2654560121236" y="88.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1074.0 88.0 723.2654560121236 249.65139597206593" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="724.5211825225989 252.3759419766123 722.0097295016484 246.92684996751956 716.0 253.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c139" name="c139" refID="MO000061519" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="714.1898088913156" y="224.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="721.0 224.0 714.1898088913156 239.66343954997413" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="716.9410190600753 240.85961788421747 711.4385987225559 238.46726121573076 711.0 247.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c39" name="c39" refID="e25" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="690.2172852104175" y="268.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="703.0 268.0 690.2172852104175 312.3134112705528" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="693.0997559839601 313.14489322445934 687.3348144368747 311.48192931664624 688.0 319.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="695.0" y="247.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649
The IRF3-activating pathway also involves TRAF3; this connects TRIF to the TBK1&#8211;IKK-epsilon heterodimer kinase complex, which is assembled by the scaffold protein NAP1 
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p13" name="p13" type="cso30:c:ProcessBiological">
<csml:connector id="c40" name="c40" refID="MO000019326" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="645.0" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="645.0 348.0 652.802230976821 375.30780841887344" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="655.6868028197434 374.4836450351813 649.9176591338985 376.1319718025656 655.0 383.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c41" name="c41" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="589.0" y="399.3711937189796"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="589.0 415.0 639.3594869055102 399.3711937189796" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="638.4702892608927 396.5060013085459 640.2486845501275 402.2363861294133 647.0 396.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c42" name="c42" refID="e26" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="662.0" y="404.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="662.0 404.0 702.2403062881097 513.491065946717" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="705.0561565580907 512.4561808047581 699.4244560181285 514.5259510886758 704.9999999999999 521.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="647.0" y="383.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649
Of note, however, IRF7 was also identified as a TANK-interacting protein through yeast two-hybrid analyses, and IRF7 can be phosphorylated by TANK-containing immune complexes in macrophages treated with unmethylated CpG DNA motifs, which are TLR9 ligands </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p14" name="p14" type="cso30:c:ProcessBiological">
<csml:connector id="c43" name="c43" refID="MO000016599" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="530.0" y="321.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="530.0 321.0 557.4314840944112 360.4327583857161" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="559.8941996997677 358.7195649211203 554.9687684890548 362.1459518503119 562.0 367.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c44" name="c44" refID="MO000019326" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="588.0126284062368" y="344.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="632.0 344.0 588.0126284062368 368.14992950245824" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="589.4564048428149 370.77966515479704 586.5688519696586 365.5201938501195 581.0 372.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c45" name="c45" refID="e27" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="508.0" y="378.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="559.0 378.0 508.0 378.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="508.0 381.0 508.0 375.0 500.0 378.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="559.0" y="367.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,17468758
This hypothesis is supported by the physical association between TANK and NEMO </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p15" name="p15" type="cso30:c:ProcessBiological">
<csml:connector id="c46" name="c46" refID="e14" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1114.8110000001107" y="385.7286639344507"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1229.0 411.0 1114.8110000001107 385.7286639344507" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1114.1627510246917 388.6577889344922 1115.4592489755298 382.79953893440916 1107.0 383.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c47" name="c47" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1098.2441610143323" y="241.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1102.0 241.0 1098.2441610143323 364.00372678061336" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1101.2427634716023 364.095287160988 1095.2455585570624 363.9121664002387 1098.0 372.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c48" name="c48" refID="e28" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1107.0" y="365.09527931970325"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1107.0 381.0 1222.0753319809703 365.09527931970325" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1221.6646022360815 362.12352881256714 1222.486061725859 368.06702982683936 1229.9999999999998 363.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1088.0" y="372.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649,16621716,16582590,16306937,16306936

TRAF3, which connects TRIF to the TBK1 and IKK-var epsilon kinase complexes for subsequent IRF3 phosphorylation, lies downstream of TRIF </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p16" name="p16" type="cso30:c:ProcessBiological">
<csml:connector id="c49" name="c49" refID="e25" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="695.0" y="326.2815156786386"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="695.0 336.0 971.0049547266648 326.2815156786386" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="970.8993863471753 323.28337370113786 971.1105231061542 329.2796576561393 979.0 326.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c104" name="c104" refID="e28" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1007.9189058818871" y="328.1361908439229"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1230.0 360.0 1007.9189058818871 328.1361908439229" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1007.492834315416 331.1057805496306 1008.3449774483581 325.1666011382153 1000.0 327.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c105" name="c105" refID="e29" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="998.0" y="336.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="998.0 336.0 1229.0841500401489 632.6885485684962" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1231.4509443269628 630.845104833552 1226.717355753335 634.5319923034403 1234.0 639.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="979.0" y="315.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649
The IRF3-activating pathway also involves TRAF3; this connects TRIF to the TBK1&#8211;IKK-epsilon heterodimer kinase complex, which is assembled by the scaffold protein NAP1 </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p17" name="p17" type="cso30:c:ProcessBiological">
<csml:connector id="c52" name="c52" refID="e29" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="894.2728493241308" y="493.3325159727285"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1234.0 649.0 894.2728493241308 493.3325159727285" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="893.0231558343576 496.0598344692776 895.5225428139039 490.6051974761795 887.0 490.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c53" name="c53" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="790.0" y="487.6135719910779"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="790.0 493.0 860.0235641159874 487.6135719910779" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="859.7934746193332 484.62240853457314 860.2536536126416 490.60473544758264 868.0000000000001 487.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c54" name="c54" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="845.0231486264291" y="495.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="873.0 495.0 845.0231486264291 543.085213298325" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="847.6161936395573 544.593894033236 842.4301036133011 541.5765325634142 841.0000000000001 550.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="868.0" y="476.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
IRF3 is phosphorylated (P) within its C-terminal domain by TBK1&#8211;IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p18" name="p18" type="cso30:c:ProcessBiological">
<csml:connector id="c57" name="c57" refID="e31" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="646.7790984158441" y="664.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="689.0 664.0 646.7790984158441 674.1330163801974" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="647.4792172732701 677.0501782861389 646.0789795584182 671.2158544742558 639.0 676.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c58" name="c58" refID="e32" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="635.0" y="687.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="635.0 687.0 700.0122310059353 800.0647495755397" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="702.612949915108 798.5693362027655 697.4115120967627 801.560162948314 704.0 807.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="620.0" y="668.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10027" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translocation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
IRF3 is phosphorylated (P) within its C-terminal domain by TBK1&#8211;IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p19" name="p19" type="cso30:c:ProcessBiological">
<csml:connector id="c55" name="c55" refID="e30" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="714.9699247055655" y="563.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="822.0 563.0 714.9699247055655 572.3069630690812" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="715.22981355466 575.2956848336682 714.710035856471 569.3182413044941 707.0 572.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c238" name="c238" refID="e96" type="cso30:c:InputInhibitor">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="703.5190802411536" y="586.7003236643484"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:inhibitoryConnector name="default" depth="0" points="741.0 678.0 703.5190802411536 586.7003236643484" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<bioInhibitoryConnectorArrow size="4.0 14.0" pointsInAbsoluteCoordinate="697.0435138285438 589.3587140863672 709.9946466537633 584.0419332423297 708.4755664126097 580.3416095779813 695.5244335873903 585.6583904220188"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c56" name="c56" refID="e31" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="698.0" y="583.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="698.0 583.0 698.0 643.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="701.0 643.0 695.0 643.0 698.0 651.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="688.0" y="564.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10017" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Dimerization" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
IRF3 is phosphorylated (P) within its C-terminal domain by TBK1&#8211;IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.

PMID: 18353649,15258597,15661910
For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-&#954;B and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells or by preventing IRF3 dimerization through direct binding to TBK1 and IKK-var epsilon in dsRNA-stimulated or Newcastle virus-infected cells, respectively</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p20" name="p20" type="cso30:c:ProcessBiological">
<csml:connector id="c59" name="c59" refID="e32" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="665.1337810613895" y="829.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="701.0 829.0 665.1337810613895 871.8645055607784" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="667.4345914760976 873.7896734587995 662.8329706466814 869.9393376627573 660.0 878.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c60" name="c60" refID="e33" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="643.0" y="836.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="643.0 836.0 647.0542968817191 870.0560938064405" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="650.033261704304 869.7014551370851 644.0753320591343 870.4107324757957 648.0 878.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c61" name="c61" refID="e34" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="661.0" y="880.4172239865221"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="661.0 888.0 703.1265334082104 880.4172239865221" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="702.5950744132647 877.4646740146011 703.6579924031563 883.3697739584433 711.0 879.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="638.0" y="878.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="23.0" height="23.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10128" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_DNABinding" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
IRF3 is phosphorylated (P) within its C-terminal domain by TBK1&#8211;IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p21" name="p21" type="cso30:c:ProcessBiological">
<csml:connector id="c62" name="c62" refID="e34" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="735.4204706649821" y="882.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="738.0 882.0 735.4204706649821 931.0110573653399" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="738.4163241529797 931.1687338647082 732.4246171769846 930.8533808659716 735.0 939.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">





indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c63" name="c63" refID="e35" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="723.6906911759853" y="960.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="731.0 960.0 723.6906911759853 980.4660647072413" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="726.5159169107699 981.4750738982358 720.8654654412009 979.4570555162469 721.0000000000001 988.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="723.0" y="939.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
IRF3 is phosphorylated (P) within its C-terminal domain by TBK1&#8211;IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p22" name="p22" type="cso30:c:ProcessBiological">
<csml:connector id="c64" name="c64" refID="e28" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1046.5734565841656" y="295.5773543349255"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1230.0 358.0 1046.5734565841656 295.5773543349255" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1045.6069487085686 298.4174005539876 1047.5399644597626 292.7373081158634 1039.0 293.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c29" name="c29" refID="MO000000065" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="995.0" y="286.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="995.0 286.0 1012.0569852921046 288.0468382350526" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1012.41442095396 285.0682077195918 1011.6995496302494 291.0254687505133 1020.0 289.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c103" name="c103" refID="e64" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1039.0" y="291.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1039.0 291.0 1222.0906480721794 318.79910363399586" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1222.540984209431 315.83309666106317 1221.6403119349277 321.76511060692854 1229.9999999999998 320.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1020.0" y="280.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2&#8211;TAK1 signaling complex, a crucial step for IKK activation </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p23" name="p22" type="cso30:c:ProcessBiological">
<csml:connector id="c50" name="c50" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1003.0" y="336.19409903942767"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1003.0 366.0 1037.9154839823848 336.19409903942767" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1035.9676968425995 333.91240553282194 1039.8632711221703 338.4757925460334 1044.0 331.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c51" name="c51" refID="e64" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1071.0" y="322.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1230.0 322.0 1071.0 322.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1071.0 325.0 1071.0 319.0 1063.0 322.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c66" name="c66" refID="e37" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1063.0" y="275.12447195866395"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1063.0 319.0 1222.2872431065896 275.12447195866395" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1221.4905661220905 272.232188123635 1223.0839200910884 278.0167557936929 1230.0 273.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1044.0" y="312.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2&#8211;TAK1 signaling complex, a crucial step for IKK activation </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p24" name="p24" type="cso30:c:ProcessBiological">
<csml:connector id="c67" name="c67" refID="e37" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1155.0" y="270.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1230.0 270.0 1155.0 270.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1155.0 273.0 1155.0 267.0 1147.0 270.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c68" name="c68" refID="e38" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1147.0" y="223.67538335099013"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1147.0 265.0 1226.8942588547525 223.67538335099013" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1225.5159900981312 221.01073042152228 1228.2725276113738 226.34003628045798 1234.0 220.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1128.0" y="260.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">





PMID: 18353649
RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2&#8211;TAK1 signaling complex, a crucial step for IKK activation </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p25" name="p25" type="cso30:c:ProcessBiological">
<csml:connector id="c69" name="c69" refID="MO000022125" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="852.0" y="210.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="852.0 210.0 894.00159952016 210.8400319904032" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="894.0615875237588 207.84063181046318 893.9416115165612 213.83943217034323 902.0000000000001 211.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c70" name="c70" refID="MO000016574" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="822.0" y="174.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="822.0 174.0 894.6044911912165 203.94935261637684" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="895.7484839600752 201.17603681308307 893.4604984223578 206.72266841967064 901.9999999999999 207.00000000000003"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c71" name="c71" refID="e39" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="922.0" y="217.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="922.0 217.0 962.0631556602339 240.0150043154535" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="963.5575290419388 237.4136876880412 960.5687822785289 242.6163209428658 969.0 244.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="901.5" y="201.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.5" height="20.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">




PMID: 18353649
RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2&#8211;TAK1 signaling complex, a crucial step for IKK activation </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p26" name="p25" type="cso30:c:ProcessBiological">
<csml:connector id="c72" name="c72" refID="e39" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="948.1159660434203" y="199.85994340570036"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="971.0 238.0 948.1159660434203 199.85994340570036" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="945.5434872662827 201.40343067198293 950.688444820558 198.31645613941777 944.0000000000001 193.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c73" name="c73" refID="e38" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="955.9563479663227" y="183.83458195450936"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1234.0 213.0 955.9563479663227 183.83458195450936" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="955.6433797333817 186.81821244188038 956.2693161992637 180.85095146713834 948.0 183.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c74" name="c74" refID="e40" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="948.0" y="151.83458195450936"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="948.0 181.0 1226.0436520336773 151.83458195450936" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1225.7306838007362 148.85095146713834 1226.3566202666182 154.81821244188038 1234.0 150.99999999999997"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="927.5" y="172.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.5" height="20.5" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649
RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2&#8211;TAK1 signaling complex, a crucial step for IKK activation </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p27" name="p27" type="cso30:c:ProcessBiological">
<csml:connector id="c75" name="c75" refID="MO000000210" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="491.0" y="226.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="491.0 226.0 528.8765225424313 245.35911152168714" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="530.2418557217986 242.6878074750989 527.511189363064 248.0304155682754 536.0 249.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c76" name="c76" refID="MO000000211" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="494.0" y="258.85296421844834"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="494.0 267.0 528.2175502825171 258.85296421844834" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="527.522688700599 255.93454557439225 528.9124118644353 261.7713828625044 536.0000000000001 257.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c77" name="c77" refID="MO000016599" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="527.0" y="270.38461538461536"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="527.0 299.0 538.9230769230769 270.38461538461536" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="536.1538461538462 269.2307692307692 541.6923076923077 271.53846153846155 542.0 263.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c78" name="c78" refID="MO000000248" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="553.0" y="222.4"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="553.0 244.0 569.2 222.4" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="566.8000000000001 220.6 571.6 224.2 574.0000000000001 216.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="536.0" y="244.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The IKK complex is assembled by NEMO and targets I&#954;B alpha for phosphorylation and subsequent degradative polyubiquitylation. </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p28" name="p28" type="cso30:c:ProcessBiological">
<csml:connector id="c79" name="c79" refID="e40" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="634.9998263045478" y="150.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1234.0 150.0 634.9998263045478 153.94728285796015" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="635.0195952328128 156.9472177221656 634.9800573762828 150.94734799375473 627.0 154.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



indirect
</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c80" name="c80" refID="MO000000248" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="589.0" y="169.5631853341599"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="589.0 196.0 607.4256587064946 169.5631853341599" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="604.9644642061846 167.84780734909538 609.8868532068045 171.27856331922442 612.0 163.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c81" name="c81" refID="e41" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="612.438898430631" y="163.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="617.0 163.0 612.438898430631 246.0120485625168" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="615.4343802196871 246.1766354740034 609.4434166415747 245.8474616510302 612.0 254.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="608.0" y="144.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
RIP1 and TRAF6 are recruited to TRIF, and the signal-induced polyubiquitylated RIP1 is subsequently recruited to the TAB2&#8211;TAK1 signaling complex, a crucial step for IKK activation 

PMID: 18353649
The IKK complex is assembled by NEMO and targets I&#954;B alpha for phosphorylation and subsequent degradative polyubiquitylation. </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p29" name="p29" type="cso30:c:ProcessBiological">
<csml:connector id="c82" name="c82" refID="MO000080947" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="484.0" y="419.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="484.0 419.0 516.0099812889772 420.60049906444885" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="516.1597941398089 417.6042420478153 515.8601684381456 423.5967560810824 524.0 421.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c156" name="c156" refID="MO000000200" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="542.7120559573644" y="439.08665228224123"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="561.0 474.0 542.7120559573644 439.08665228224123" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="540.054561351524 440.4786732662529 545.3695505632048 437.6946312982295 539.0 431.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c84" name="c84" refID="e42" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="529.1984430354239" y="432.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="533.0 432.0 529.1984430354239 457.0902759662019" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="532.1645895480982 457.5396921044859 526.2322965227496 456.6408598279179 528.0 465.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="524.0" y="412.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649
The p50&#8211;p65 heterodimer is then released from I&#954;B alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to &#954;B sites</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p30" name="p30" type="cso30:c:ProcessBiological">
<csml:connector id="c85" name="c85" refID="e42" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="524.271030765326" y="491.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="526.0 491.0 524.271030765326 542.0045924228813" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="527.2693086067455 542.1062289598785 521.2727529239065 541.902955885884 524.0 549.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c86" name="c86" refID="MO000000233" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="540.929823205461" y="555.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="563.0 555.0 540.929823205461 557.9426902392719" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="541.3263143657341 560.9163739413198 540.533332045188 554.969006537224 533.0 559.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c87" name="c87" refID="e44" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="522.3805211953236" y="569.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="523.0 569.0 522.3805211953236 582.0090548982045" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="525.3771256084968 582.1517503464509 519.3839167821502 581.8663594499582 521.9999999999999 590.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="514.0" y="550.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The p50&#8211;p65 heterodimer is then released from I&#954;B alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to &#954;B sites</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p31" name="p31" type="cso30:c:ProcessBiological">
<csml:connector id="c88" name="c88" refID="e41" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="613.0" y="274.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="613.0 274.0 634.4694485443353 597.0176121897711" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="637.4628439731711 596.8186553938967 631.4760531154993 597.2165689856453 635.0 605.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c89" name="c89" refID="e44" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="533.0" y="607.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="533.0 607.0 617.0300752944345 614.3069630690812" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="617.289964143529 611.3182413044942 616.77018644534 617.2956848336684 624.9999999999999 615.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c90" name="c90" refID="e45" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="571.9601774867889" y="622.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="625.0 622.0 571.9601774867889 652.0558994241529" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="573.4392152027316 654.6659659816987 570.4811397708463 649.445832866607 565.0 655.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="625.0" y="605.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The IKK complex is assembled by NEMO and targets I&#954;B alpha for phosphorylation and subsequent degradative polyubiquitylation. 

PMID: 18353649
TNF-alpha triggers NF-&#954;B activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-&#946;-mediated I&#954;Bgreek small letter alpha phosphorylation and subsequent degradation.  </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p32" name="p32" type="cso30:c:ProcessBiological">
<csml:connector id="c91" name="c91" refID="e45" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="456.0" y="662.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="543.0 662.0 456.0 662.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="456.0 665.0 456.0 659.0 448.0 662.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c92" name="c92" refID="e46" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="448.0" y="669.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="448.0 669.0 482.54375739473255 694.2759200449262" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="484.3152873778852 691.854829067951 480.77222741157993 696.6970110219015 489.0 699.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="427.0" y="651.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The IKK complex is assembled by NEMO and targets I&#954;B alpha for phosphorylation and subsequent degradative polyubiquitylation. 

PMID: 18353649
TNF-alpha triggers NF-&#954;B activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-&#946;-mediated I&#954;Bgreek small letter alpha phosphorylation and subsequent degradation.  </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p33" name="p33" type="cso30:c:ProcessBiological">
<csml:connector id="c93" name="c93" refID="e46" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="451.74701391970297" y="724.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="492.0 724.0 451.74701391970297 799.931769196924" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="454.39760047085645 801.3368994168127 449.0964273685494 798.5266389770355 448.0 807.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c94" name="c94" refID="e42" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="445.0" y="498.76688876399714"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="445.0 807.0 521.0828565709121 498.76688876399714" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="518.1702732844132 498.0479599780892 523.995439857411 499.4858175499051 523.0 491.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c218" name="c218" refID="e94" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="452.0" y="752.0784191224138"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="452.0 812.0 553.1176677309267 752.0784191224138" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="551.5882605600215 749.4975445215113 554.6470749018318 754.6592937233163 560.0000000000001 747.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c212" name="c212" refID="MO000019479" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="437.6255299625491" y="828.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="441.0 828.0 437.6255299625491 871.0244929774996" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="440.61634509598673 871.2590667134555 434.63471482911143 870.7899192415437 437.0 879.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="431.0" y="807.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10012" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownDegradation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The IKK complex is assembled by NEMO and targets I&#954;B alpha for phosphorylation and subsequent degradative polyubiquitylation. 

PMID: 18353649
TNF-alpha triggers NF-&#954;B activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-&#946;-mediated I&#954;Bgreek small letter alpha phosphorylation and subsequent degradation.  </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p34" name="p34" type="cso30:c:ProcessBiological">
<csml:connector id="c201" name="c201" refID="e94" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="580.0" y="730.9870028021417"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="580.0 739.0 611.2506890716477 730.9870028021417" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="610.5055630208445 728.0810112040095 611.9958151224507 733.8929944002738 619.0 729.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c97" name="c97" refID="e48" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="570.8123825158167" y="736.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="625.0 736.0 570.8123825158167 835.9668115656485" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="573.4498281786985 837.3964550090798 568.1749368529348 834.5371681222173 567.0 843.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="619.0" y="715.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10027" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translocation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The p50&#8211;p65 heterodimer is then released from I&#954;B alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to &#954;B sites

PMID: 18353649
The p50&#8211;p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p35" name="p35" type="cso30:c:ProcessBiological">
<csml:connector id="c98" name="c98" refID="e48" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="534.5876987549067" y="869.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="551.0 869.0 534.5876987549067 892.4461446358476" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="537.0453945164638 894.1665316689376 532.1300029933495 890.7257576027577 530.0000000000001 899.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c99" name="c99" refID="e49" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="532.0" y="921.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="532.0 921.0 543.6656411242413 934.0380694917992" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="545.9013650648167 932.0376849133897 541.429917183666 936.0384540702087 549.0 940.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="511.0" y="899.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The p50&#8211;p65 heterodimer is then released from I&#954;B alpha, moves into the nucleus and induces the expression of various proinflammatory genes through binding to &#954;B sites</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p36" name="p5" type="cso30:c:ProcessBiological">
<csml:connector id="c100" name="c100" refID="e20" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="825.0" y="323.7104889620336"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="825.0 410.0 848.8673115636929 323.7104889620336" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="845.9758782029303 322.9107307984184 851.7587449244555 324.5102471256488 851.0 316.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c101" name="c101" refID="e15" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="869.7656092540743" y="94.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1074.0 94.0 869.7656092540743 290.4540330032237" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="871.8453468778654 292.61613647350157 867.6858716302831 288.2919295329458 863.9999999999999 296.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c102" name="c102" refID="e63" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="770.1283172646318" y="109.36299063504812"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="849.0 295.0 770.1283172646318 109.36299063504812" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="767.3671957764888 110.53610960928506 772.8894387527748 108.18987166081118 767.0 102.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="843.0" y="295.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,16621716,16582590,16306937,16306936
TRAF3, which connects TRIF to the TBK1 and IKK-var epsilon kinase complexes for subsequent IRF3 phosphorylation, lies downstream of TRIF 

PMID: 18353649
IRF3 activation also requires TRAF3, which binds to TANK, the scaffold protein that assembles the TBK1&#8211;IKK-epsilon heterodimer</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p37" name="p17" type="cso30:c:ProcessBiological">
<csml:connector id="c106" name="c106" refID="e63" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="763.0" y="102.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="763.0 102.0 852.9442623933992 440.268639001262" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="855.843522767926 439.4977373987867 850.0450020188724 441.03954060373735 855.0 448.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c107" name="c107" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="790.0" y="466.2724472327433"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="790.0 489.0 840.6999254038803 466.2724472327433" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="839.4727576916016 463.53491925919843 841.9270931161591 469.0099752062881 847.9999999999999 463.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c108" name="c108" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="838.7851494673247" y="467.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="856.0 467.0 838.7851494673247 542.2017154848447" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="841.7095061605079 542.8711465350915 835.8607927741415 541.532284434598 837.0 550.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="848.0" y="448.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649
IRF3 is phosphorylated (P) within its C-terminal domain by TBK1&#8211;IKK-epsilon and forms a homodimer which translocates to the nucleus, binds to ISREs and induces the expression of IFN-dependent genes.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p38" name="p38" type="cso30:c:ProcessBiological">
<csml:connector id="c109" name="c109" refID="MO000019406" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="560.0" y="168.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="560.0 168.0 631.1591951486308 182.41198889086195" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="631.7546993145576 179.47168707159852 630.563690982704 185.3522907101254 639.0 184.00000000000003"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c110" name="c110" refID="e5" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="667.6422871255307" y="105.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="912.0 105.0 667.6422871255307 180.63453017543094" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="668.5293383097442 183.50038784750498 666.7552359413173 177.7686725033569 660.0 183.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c111" name="c111" refID="e65" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="652.0" y="124.9249690339478"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="652.0 175.0 658.9069008229037 124.9249690339478" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="655.9350374351733 124.51505684253671 661.8787642106341 125.3348812253589 660.0 117.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="639.0" y="175.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
LPS and IKK-mediated NF-&#954;B activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p39" name="p38" type="cso30:c:ProcessBiological">
<csml:connector id="c112" name="c112" refID="e65" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="550.1026788994519" y="109.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="649.0 109.0 550.1026788994519 192.82725312332173" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="552.0424589782062 195.11575771061618 548.1628988206976 190.53874853602727 544.0 198.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c113" name="c113" refID="MO000068831" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="475.0" y="173.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="475.0 173.0 516.0273957030035 196.07791008293952" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="517.4981794219012 193.46318347156588 514.5566119841059 198.6926366943132 523.0 200.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c114" name="c114" refID="e66" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="519.4133125023502" y="124.87416965595108"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="532.0 195.0 519.4133125023502 124.87416965595108" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="516.4604988813686 125.4041618443324 522.3661261233319 124.34417746756976 518.0000000000001 117.00000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="523.0" y="195.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
LPS and IKK-mediated NF-&#954;B activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p40" name="p38" type="cso30:c:ProcessBiological">
<csml:connector id="c115" name="c115" refID="e66" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="491.78129394354863" y="117.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="512.0 117.0 491.78129394354863 323.0382426705046" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="494.7669529421094 323.3312278993353 488.79563494498785 322.74525744167386 491.0 331.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c116" name="c116" refID="MO000016573" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="444.0" y="342.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="444.0 342.0 471.0 342.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="471.0 339.0 471.0 345.0 479.0 342.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c117" name="c117" refID="e67" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="382.23944430734275" y="217.04551266231854"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="481.0 331.0 382.23944430734275 217.04551266231854" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="379.9723770589733 219.01030427757206 384.50651155571217 215.080721047065 377.0 211.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="479.0" y="331.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
LPS and IKK-mediated NF-&#954;B activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p41" name="p41" type="cso30:c:ProcessBiological">
<csml:connector id="c118" name="c118" refID="e67" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="371.0" y="217.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="371.0 217.0 440.84960825748846 467.29442958933356" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="443.7391971614884 466.4880326858917 437.9600193534886 468.10082649277535 443.00000000000006 475.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c119" name="c119" refID="MO000000213" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="449.79887605359005" y="449.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="454.0 449.0 449.79887605359005 467.204870434443" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="452.7220496406739 467.87944895453927 446.8757024665062 466.5302919143467 448.0 474.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c120" name="c120" refID="e68" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="385.00561363380984" y="379.9249591635357"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="440.0 475.0 385.00561363380984 379.9249591635357" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="382.40875394748394 381.42706427621437 387.6024733201357 378.422854050857 380.99999999999994 373.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="435.0" y="475.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
LPS and IKK-mediated NF-&#954;B activation occurs through the recruitment of Tollip, Mal and Myd88 followed by the binding of the kinase IRAK1 to TLR4</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p42" name="p42" type="cso30:c:ProcessBiological">
<csml:connector id="c122" name="c122" refID="MO000039077" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="437.0" y="547.906973581205"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="437.0 566.0 439.78354252596847 547.906973581205" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="436.8184274330166 547.4508020284431 442.74865761892033 548.3631451339668 441.0 540.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c278" name="c278" refID="e68" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="378.0" y="373.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="378.0 373.0 434.9768240205871 512.5932188504385" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="437.7543669516727 511.45952785815865 432.1992810895015 513.7269098427183 438.0 520.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c121" name="c121" refID="e69" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="387.7165612572172" y="494.34601022525817"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="432.0 523.0 387.7165612572172 494.34601022525817" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="386.0868074227454 496.86472069671464 389.346315091689 491.82729975380175 381.0 490.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="432.0" y="520.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
IRAK1 is subsequently phosphorylated by IRAK4 </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p43" name="p43" type="cso30:c:ProcessBiological">
<csml:connector id="c123" name="c123" refID="e69" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="381.0" y="483.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="381.0 483.0 600.0250328976545 500.36762375399906" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="600.2621739899048 497.3770110906195 599.7878918054041 503.35823641737863 608.0 501.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c124" name="c124" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="634.5701659755862" y="377.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="984.0 377.0 634.5701659755862 496.4129965013403" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="635.5402922875836 499.25180874218506 633.6000396635889 493.57418426049543 627.0 498.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c125" name="c125" refID="e70" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="392.7672476530251" y="504.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="608.0 504.0 392.7672476530251 557.0843111169669" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="393.4856309841625 559.9970289868513 392.0488643218877 554.1715932470826 385.00000000000006 559.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="608.0" y="492.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2&#8211;TAB3&#8211;TAK1 complex, a step required for IKK activation</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p44" name="p43" type="cso30:c:ProcessBiological">
<csml:connector id="c129" name="c129" refID="e70" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="385.0" y="571.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="385.0 571.0 437.74271601955365 613.01538394778" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="439.61194703913617 610.6689024551126 435.8734849999712 615.3618654404474 444.00000000000006 618.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c131" name="c131" refID="e71" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="471.0" y="626.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="717.0 626.0 471.0 626.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="471.0 629.0 471.0 623.0 463.0 626.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c132" name="c132" refID="e72" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="392.2744631916617" y="630.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="444.0 630.0 392.2744631916617 653.6710083699176" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="393.52283505294264 656.3989320667907 391.0260913303808 650.9430846730445 385.0 657.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="444.0" y="616.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2&#8211;TAB3&#8211;TAK1 complex, a step required for IKK activation</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p45" name="p43" type="cso30:c:ProcessBiological">
<csml:connector id="c126" name="c126" refID="MO000016574" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="729.9284966869867" y="182.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="805.0 182.0 729.9284966869867 484.2359224290144" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="732.8400257761062 484.9591086866344 727.016967597867 483.51273617139435 727.9999999999999 491.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c127" name="c127" refID="MO000022125" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="732.9522635832988" y="220.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="838.0 220.0 732.9522635832988 484.5646694939143" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="735.7405125230808 485.6717683376514 730.1640146435166 483.45757065017733 730.0 492.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c128" name="c128" refID="MO000041541" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="729.7354436625493" y="518.8094964814716"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="734.0 538.0 729.7354436625493 518.8094964814716" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="726.8068824819975 519.4602878549275 732.6640048431012 518.1587051080156 728.0000000000001 510.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c130" name="c130" refID="e71" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="726.0" y="511.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="726.0 511.0 726.0 605.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="729.0 605.0 723.0 605.0 726.0 613.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="716.0" y="492.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2&#8211;TAB3&#8211;TAK1 complex, a step required for IKK activation</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p46" name="p46" type="cso30:c:ProcessBiological">
<csml:connector id="c133" name="c133" refID="e72" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="385.0" y="370.06722019490496"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="385.0 642.0 529.2510803267171 370.06722019490496" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="526.6008727536278 368.66137531742385 531.9012878998064 371.473065072386 533.0 363.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c134" name="c134" refID="MO000000248" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="543.2767863074105" y="216.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="579.0 216.0 543.2767863074105 336.33082506977524" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="546.1527269062448 337.1846199350542 540.4008457085762 335.4770302044963 541.0 344.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c135" name="c135" refID="e41" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="546.0" y="280.1601724872445"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="546.0 344.0 598.8958570819974 280.1601724872445" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="596.5857923992808 278.24611889299354 601.2059217647142 282.07422608149545 604.0 274.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="528.0" y="344.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
This event triggers the recruitment of TRAF6 to the receptor complex and subsequent signal-induced association of these proteins with the TAB2&#8211;TAB3&#8211;TAK1 complex, a step required for IKK activation</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p47" name="p47" type="cso30:c:ProcessBiological">
<csml:connector id="c137" name="c137" refID="MO000066987" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1120.0" y="793.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1120.0 793.0 1160.2566223233794 818.6957163766251" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1161.870728682145 816.1669497478923 1158.6425159646137 821.2244830053578 1167.0 823.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c279" name="c279" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1187.6898372918974" y="592.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1302.0 592.0 1187.6898372918974 811.9017536842314" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1190.3516796603108 813.2854426686929 1185.0279949234844 810.5180646997699 1184.0000000000002 819.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c138" name="c138" refID="e74" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1103.0" y="830.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1167.0 830.0 1103.0 830.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1103.0 833.0 1103.0 827.0 1095.0 830.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1167.0" y="819.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649,16039576
Both proteins harbor a DEx(D/H) box RNA helicase domain that is required to sense dsRNA synthesized from replicating virus entering the cytoplasm (e.g. the Sendai virus, the Newcastle disease virus or the vesicular stomatitis virus

PMID: 18353649
RNA from viruses triggers the activation of the cytosolic receptors RIG-I and MDA-5 through binding to their DExD/H box RNA helicase</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p48" name="p47" type="cso30:c:ProcessBiological">
<csml:connector id="c140" name="c140" refID="MO000103999" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1071.0" y="903.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1071.0 903.0 1094.891034743561 915.330856641838" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1096.2669635028717 912.6649946706733 1093.51510598425 917.9967186130025 1101.9999999999998 918.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c280" name="c280" refID="MO000022224" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1121.9528174517275" y="592.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1301.0 592.0 1121.9528174517275 907.0447692925886" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1124.5610289670067 908.5270758369865 1119.3446059364483 905.5624627481908 1117.9999999999998 914.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c141" name="c141" refID="e75" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1121.0" y="932.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1121.0 932.0 1150.1792847505176 959.511897050488" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1152.2373233565845 957.329128831932 1148.1212461444504 961.6946652690439 1156.0 965.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1102.0" y="914.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649,16039576
Both proteins harbor a DEx(D/H) box RNA helicase domain that is required to sense dsRNA synthesized from replicating virus entering the cytoplasm (e.g. the Sendai virus, the Newcastle disease virus or the vesicular stomatitis virus

PMID: 18353649
RNA from viruses triggers the activation of the cytosolic receptors RIG-I and MDA-5 through binding to their DExD/H box RNA helicase</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p49" name="p49" type="cso30:c:ProcessBiological">
<csml:connector id="c142" name="c142" refID="e74" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1027.616228490282" y="833.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1076.0 833.0 1027.616228490282 848.551926556695" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1028.5342560315214 851.4080122405508 1026.6982009490428 845.6958408728392 1019.9999999999999 850.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c144" name="c144" refID="MO000090351" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1010.0" y="872.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1010.0 923.0 1010.0 872.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1007.0 872.0 1013.0 872.0 1010.0 864.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c143" name="c143" refID="e76" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1003.9922778767136" y="803.9382230137094"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1009.0 844.0 1003.9922778767136 803.9382230137094" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1001.0154442465727 804.310327217477 1006.9691115068547 803.5661188099418 1003.0 796.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1000.0" y="844.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p50" name="p49" type="cso30:c:ProcessBiological">
<csml:connector id="c145" name="c145" refID="e75" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1142.9656235549244" y="984.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1157.0 984.0 1142.9656235549244 1001.727633404306" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1145.3177610283096 1003.5897422374027 1140.6134860815391 999.8655245712093 1137.9999999999998 1008.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c147" name="c147" refID="MO000090351" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1021.0" y="942.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1021.0 942.0 1113.43681466584 1006.4256587064946" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1115.1521926509047 1003.9644642061846 1111.7214366807757 1008.8868532068045 1120.0 1011.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">



indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c146" name="c146" refID="e77" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1055.0" y="1018.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1120.0 1018.0 1055.0 1018.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1055.0 1021.0 1055.0 1015.0 1047.0 1018.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1120.0" y="1008.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p51" name="p51" type="cso30:c:ProcessBiological">
<csml:connector id="c148" name="c148" refID="e76" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="976.9322862329901" y="795.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="992.0 795.0 976.9322862329901 808.632693408247" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="978.9450262048975 810.8573007456183 974.9195462610828 806.4080860708757 971.0 814.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c149" name="c149" refID="MO000094908" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="967.2838126928013" y="838.6670854686902"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="979.0 878.0 967.2838126928013 838.6670854686902" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="964.4086556420425 839.5235152284906 970.1589697435601 837.8106557088896 965.0 831.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c152" name="c152" refID="e78" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="960.271030765326" y="760.9954075771187"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="962.0 812.0 960.271030765326 760.9954075771187" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="957.2727529239065 761.097044114116 963.2693086067455 760.8937710401215 960.0 753.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="952.0" y="812.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS.

PMID: 18353649,16125763
Because they also harbor two caspase-recruitment domain (CARD)-like domains, they can transmit the signal through direct binding to mitochondrial antiviral signaling (MAVS)</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p52" name="p51" type="cso30:c:ProcessBiological">
<csml:connector id="c150" name="c150" refID="MO000094908" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="960.6079254665552" y="902.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="978.0 902.0 960.6079254665552 952.4370161469898" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="963.444044411434 953.414988196948 957.7718065216764 951.4590440970316 957.9999999999999 960.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c151" name="c151" refID="e77" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="969.9525178510431" y="978.95758708444"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1028.0 1012.0 969.9525178510431 978.95758708444" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="968.4684226943781 981.5647812785812 971.436613007708 976.3503928902988 962.9999999999999 975.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c153" name="c153" refID="e79" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="943.6906911759853" y="939.5339352927587"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="951.0 960.0 943.6906911759853 939.5339352927587" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="940.8654654412007 940.5429444837531 946.5159169107698 938.5249261017642 941.0 931.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="944.0" y="960.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">



PMID: 18353649
The CARD domains of these receptors subsequently undergo K63-linked polyubiquitylation by the E3 ubiquitin ligase TRIM25, which might facilitate the interaction of RIG-I with the mitochondrial adaptor MAVS.

PMID: 18353649,16125763
Because they also harbor two caspase-recruitment domain (CARD)-like domains, they can transmit the signal through direct binding to mitochondrial antiviral signaling (MAVS)</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p54" name="p54" type="cso30:c:ProcessBiological">
<csml:connector id="c157" name="c157" refID="e80" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1099.6307940059135" y="1035.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1308.0 1035.0 1099.6307940059135 1100.5977129981384" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1100.5316516316116 1103.459260750356 1098.7299363802153 1097.7361652459208 1091.9999999999998 1103.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c65" name="c65" refID="MO000008179" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1082.3330443576974" y="1071.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="1083.0 1071.0 1082.3330443576974 1087.0069354152613" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1085.3304435769744 1087.1318270493978 1079.3356451384202 1086.8820437811246 1082.0 1095.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c158" name="c158" refID="e82" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1048.5857022873224" y="1114.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1071.0 1114.0 1048.5857022873224 1129.4581363535708" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1050.2889011547334 1131.9277747113167 1046.8825034199115 1126.988497995825 1042.0 1134.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1071.0" y="1095.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10128" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_DNABinding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
Indeed, the intracellular DNA sensor is DNA-dependent activator of IFN-regulatory factors (DAI), which binds to, and is activated by, DNA from various sources</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p53" name="p53" type="cso30:c:ProcessBiological">
<csml:connector id="c154" name="c154" refID="e78" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="937.6996903666364" y="673.5307152332491"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="954.0 719.0 937.6996903666364 673.5307152332491" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="934.875672154168 674.5430991207378 940.5237085791048 672.5183313457604 934.9999999999999 666.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c155" name="c155" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="938.9774620518558" y="241.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1098.0 241.0 938.9774620518558 637.5747242657421" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="941.7619404522025 638.6912725351881 936.192983651509 636.4581759962962 935.9999999999999 645.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c159" name="c159" refID="e83" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="890.7365962981012" y="659.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="921.0 659.0 890.7365962981012 666.9640536057628" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="891.5000761959401 669.8652772175508 889.9731164002623 664.0628299939749 883.0 669.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="921.0" y="645.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p55" name="p53" type="cso30:c:ProcessBiological">
<csml:connector id="c163" name="c163" refID="e83" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="881.0" y="598.036844177308"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="881.0 661.0 935.7505702806017 598.036844177308" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="933.4867537141112 596.0683080325337 938.0143868470922 600.0053803220824 941.0 592.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c164" name="c164" refID="e25" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="695.0" y="346.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="695.0 346.0 933.1308029464459 566.563776499577" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="935.1693867591046 564.3628276044942 931.0922191337872 568.7647253946598 939.0 572.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c165" name="c165" refID="e84" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="899.7008847747089" y="589.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="939.0 589.0 899.7008847747089 614.6298577556246" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="901.3396881163496 617.1426895461404 898.0620814330681 612.1170259651087 893.0 619.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="939.0" y="571.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p56" name="p53" type="cso30:c:ProcessBiological">
<csml:connector id="c160" name="c160" refID="e79" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="897.8065486848079" y="932.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="927.0 932.0 897.8065486848079 985.9636524311127" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="900.4451790231407 987.3911081879156 895.1679183464752 984.5361966743097 894.0 993.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c161" name="c161" refID="MO000016963" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="893.1326884363071" y="241.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1099.0 241.0 893.1326884363071 985.2895110379665" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="896.0241217970697 986.0892692015816 890.2412550755445 984.4897528743512 891.0 993.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c162" name="c162" refID="e83" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="872.3866444113866" y="690.990651168656"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="887.0 993.0 872.3866444113866 690.990651168656" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="869.3901502231406 691.1356428229259 875.3831385996326 690.8456595143859 872.0 682.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="877.0" y="993.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p57" name="p53" type="cso30:c:ProcessBiological">
<csml:connector id="c166" name="c166" refID="e83" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="805.7824497174829" y="675.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="861.0 675.0 805.7824497174829 688.1470357815517" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="806.477311299401 691.0654544256079 805.0875881355647 685.2286171374957 797.9999999999999 690.0000000000001"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c167" name="c167" refID="e20" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="789.9757119070324" y="445.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="818.0 445.0 789.9757119070324 673.0597237910464" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="792.95331548539 673.4256157561836 786.9981083286748 672.6938318259092 789.0 681.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c168" name="c168" refID="e85" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="780.6428033978249" y="702.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="785.0 702.0 780.6428033978249 714.4491331490718" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="783.474378466923 715.4401844232561 777.8112283287269 713.4580818748875 778.0000000000001 722.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="777.0" y="681.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p58" name="p53" type="cso30:c:ProcessBiological">
<csml:connector id="c169" name="c169" refID="e83" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="877.0" y="517.3124880008232"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="877.0 661.0 940.75538611884 517.3124880008232" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="938.0132031185312 516.0957577953883 943.4975691191487 518.5292182062583 943.9999999999999 510.00000000000006"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c170" name="c170" refID="e24" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="896.0" y="435.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="896.0 435.0 934.0165857458423 482.741758843616" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="936.3634261794864 480.8729784983069 931.6697453121984 484.61053918892515 939.0 489.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c171" name="c171" refID="e86" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="948.0" y="433.99597180236293"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="948.0 489.0 949.7461596253219 433.99597180236293" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="946.7476701994358 433.9007816618586 952.744649051208 434.09116194286725 950.0000000000001 426.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="937.0" y="489.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p59" name="p59" type="cso30:c:ProcessBiological">
<csml:connector id="c172" name="c172" refID="e86" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="889.2973429588436" y="426.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="943.0 426.0 889.2973429588436 544.7111366172932" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="892.0306667273587 545.9476402268594 886.5640191903286 543.4746330077268 886.0000000000001 552.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c173" name="c173" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="790.0" y="502.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="790.0 502.0 865.2812413168878 550.6573876804274" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="866.9097209367275 548.1378531742603 863.652761697048 553.1769221865944 872.0 554.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c174" name="c174" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="854.0" y="562.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="872.0 562.0 854.0 562.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="854.0 565.0 854.0 559.0 846.0 562.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="872.0" y="552.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p60" name="p59" type="cso30:c:ProcessBiological">
<csml:connector id="c175" name="c175" refID="e84" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="787.0" y="626.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="871.0 626.0 787.0 626.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="787.0 629.0 787.0 623.0 779.0 626.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c176" name="c176" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="771.435715945279" y="506.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="777.0 506.0 771.435715945279 608.0118743365524" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="774.4312630690717 608.175267816032 768.440168821486 607.8484808570728 771.0 616.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c177" name="c177" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="779.0" y="579.6568542494924"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="779.0 617.0 816.3431457505076 579.6568542494924" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="814.2218254069479 577.5355339059328 818.4644660940672 581.7781745930521 821.9999999999999 574.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="760.0" y="616.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p61" name="p59" type="cso30:c:ProcessBiological">
<csml:connector id="c178" name="c178" refID="e85" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="785.0" y="657.2636575727674"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="785.0 724.0 838.0233953531437 657.2636575727674" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="835.6745237633559 655.3974308301963 840.3722669429314 659.1298843153386 843.0 650.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c179" name="c179" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="784.0" y="506.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="784.0 506.0 841.51401891981 624.7994489163289" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="844.2142255761867 623.4922060112576 838.8138122634333 626.1066918214001 845.0 632.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c180" name="c180" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="837.6208448322876" y="581.8340833560568"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="848.0 632.0 837.6208448322876 581.8340833560568" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="834.6830635737663 582.4419001681647 840.5586260908088 581.226266543949 836.0 574.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="840.0" y="632.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
MAVS signals to TRAF3, which triggers IRF3 phosphorylation through TBK1 and IKK-epsilon-mediated activations.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p63" name="p63" type="cso30:c:ProcessBiological">
<csml:connector id="c182" name="c182" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="582.0" y="429.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="582.0 429.0 666.5709136644933 694.3776946023755" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="669.4292781886026 693.4667872265605 663.7125491403842 695.2886019781905 669.0000000000001 702.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c184" name="c184" refID="e84" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="688.4142813037531" y="631.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="871.0 631.0 688.4142813037531 704.9952649453211" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="689.5410569492577 707.7756204342285 687.2875056582485 702.2149094564136 681.0 708.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c183" name="c183" refID="e87" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="670.067508144815" y="472.99971516057815"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="672.0 702.0 670.067508144815 472.99971516057815" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="667.0676149595981 473.02503071488377 673.0674013300318 472.9743996062725 669.9999999999999 465.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="662.0" y="702.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p64" name="p63" type="cso30:c:ProcessBiological">
<csml:connector id="c185" name="c185" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="588.0" y="429.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="588.0 429.0 725.6129949419461 580.0855958453534" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="727.8308964999386 578.0654689485832 723.3950933839536 582.1057227421237 731.0 586.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c181" name="c181" refID="e85" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="743.749691655339" y="613.806316616128"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="768.0 722.0 743.749691655339 613.806316616128" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="740.822322924291 614.4624509868802 746.6770603863871 613.1501822453758 742.0 606.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c186" name="c186" refID="e87" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="678.5539958447581" y="472.1672249535955"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="735.0 586.0 678.5539958447581 472.1672249535955" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="675.8662864871598 473.4999733953798 681.2417052023563 470.83447651181126 675.0 465.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="730.0" y="586.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p65" name="p63" type="cso30:c:ProcessBiological">
<csml:connector id="c188" name="c188" refID="MO000007702" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="589.0" y="418.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="589.0 418.0 696.0 418.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="696.0 415.0 696.0 421.0 704.0 418.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c187" name="c187" refID="e86" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="731.9944676154428" y="410.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="939.0 410.0 731.9944676154428 417.7025314375649" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="732.106018326356 420.70045679335595 731.8829169045297 414.7046060817739 724.0000000000001 418.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c189" name="c189" refID="e87" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="687.1676940130167" y="426.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="704.0 426.0 687.1676940130167 439.90494842402967" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="689.0783383540055 442.21783367891095 685.2570496720277 437.5920631691484 680.9999999999999 445.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="704.0" y="408.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p66" name="p66" type="cso30:c:ProcessBiological">
<csml:connector id="c190" name="c190" refID="e79" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="927.796029752168" y="828.9602975216799"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="935.0 901.0 927.796029752168 828.9602975216799" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="924.810918181538 829.2588086787429 930.7811413227979 828.6617863646169 927.0 821.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c191" name="c191" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="929.2350150421889" y="383.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="993.0 383.0 929.2350150421889 791.0959037299912" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="932.1990511434423 791.559034370812 926.2709789409356 790.6327730891703 928.0000000000001 799.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c192" name="c192" refID="e88" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="883.0" y="810.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="915.0 810.0 883.0 810.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="883.0 813.0 883.0 807.0 875.0 810.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="915.0" y="799.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
Of note, MAVS can also signal to TRAF6 for the IKK-alpha&#8211;IKK-beta-complex-mediated NF-&#954;B activation

PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p67" name="p66" type="cso30:c:ProcessBiological">
<csml:connector id="c193" name="c193" refID="e78" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="882.7673585722439" y="739.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="948.0 739.0 882.7673585722439 755.0847608999946" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="883.4855732347459 757.9975203645861 882.0491439097418 752.1720014354031 875.0 757.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c194" name="c194" refID="MO000000212" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="870.5484617733453" y="383.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="991.0 383.0 870.5484617733453 741.416772284192" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="873.3921721667732 742.3724454491964 867.7047513799173 740.4610991191875 867.9999999999999 748.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c195" name="c195" refID="e88" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="865.0" y="771.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="865.0 771.0 865.7243017932818 792.0047520051713" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="868.7225197913426 791.901365177652 862.7260837952211 792.1081388326907 866.0000000000001 800.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="853.0" y="749.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="22.0" height="22.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
Of note, MAVS can also signal to TRAF6 for the IKK-alpha&#8211;IKK-beta-complex-mediated NF-&#954;B activation

PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p68" name="p66" type="cso30:c:ProcessBiological">
<csml:connector id="c196" name="c196" refID="e88" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="679.6010289645783" y="266.5653584399832"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="863.0 800.0 679.6010289645783 266.5653584399832" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="676.7640195495846 267.54074430170004 682.438038379572 265.5899725782663 677.0 259.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c197" name="c197" refID="MO000000248" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="592.0" y="211.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="592.0 211.0 656.766010826032 241.58394955673737" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="658.0470297422555 238.8712036164994 655.4849919098085 244.29669549697536 664.0 245.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c198" name="c198" refID="e41" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="629.7824497174829" y="252.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="664.0 252.0 629.7824497174829 260.14703578155166" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="630.477311299401 263.06545442560775 629.0875881355647 257.2286171374956 621.9999999999999 261.99999999999994"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="664.0" y="240.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
Of note, MAVS can also signal to TRAF6 for the IKK-alpha&#8211;IKK-beta-complex-mediated NF-&#954;B activation

PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p69" name="p66" type="cso30:c:ProcessBiological">
<csml:connector id="c199" name="c199" refID="e41" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="600.3155437337081" y="274.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="612.0 274.0 600.3155437337081 570.0062254127279" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="603.3132092039351 570.1245543128684 597.317878263481 569.8878965125873 600.0 578.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c221" name="c221" refID="e44" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="533.0" y="591.7788826941525"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="533.0 603.0 582.2002835717929 591.7788826941525" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="581.5332025614856 588.8539890335747 582.8673645821 594.7037763547302 590.0 589.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c200" name="c200" refID="e94" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="574.4886870935704" y="597.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="598.0 597.0 574.4886870935704 721.1397321459484" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="577.4362875388398 721.6979898060373 571.5410866483011 720.5814744858595 573.0000000000001 729.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="590.0" y="578.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
Of note, MAVS can also signal to TRAF6 for the IKK-alpha&#8211;IKK-beta-complex-mediated NF-&#954;B activation

PMID: 18353649,16153868,16125763
This protein subsequently triggers NF-&#954;B activation through TRAF6 and the IKK-alpha&#8211;beta complex or IRF3 and IRF7 activation through TRAF3 and the TBK1 and IKK-epsilon kinase complexes </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p70" name="p70" type="cso30:c:ProcessBiological">
<csml:connector id="c202" name="c202" refID="e82" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="960.8896597015578" y="1102.066028676329"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1015.0 1134.0 960.8896597015578 1102.066028676329" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="959.3648989479343 1104.6496510644133 962.4144204551811 1099.482406288245 954.0 1098.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c203" name="c203" refID="MO000019331" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="761.0" y="318.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="761.0 318.0 939.1631353042321 1073.2137346507172" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="942.0829848102131 1072.5249103898043 936.243285798251 1073.9025589116302 941.0 1081.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c204" name="c204" refID="e90" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="898.8303694063522" y="1099.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="933.0 1099.0 898.8303694063522 1119.8351406058828" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="900.3921916791462 1122.396529133265 897.2685471335583 1117.2737520785008 892.0 1124.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="933.0" y="1081.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,17618271
DAI subsequently recruits TBK1, which triggers IRF3 phosphorylation and type I IFN gene expression</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p71" name="p71" type="cso30:c:ProcessBiological">
<csml:connector id="c205" name="c205" refID="e90" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="824.3692975529848" y="1088.8406661402685"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="868.0 1122.0 824.3692975529848 1088.8406661402685" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="822.5540477503841 1091.2291527226378 826.1845473555854 1086.4521795578992 818.0 1084.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c206" name="c206" refID="MO000007694" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="779.0" y="506.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="779.0 506.0 806.6004990644489 1058.0099812889773" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="809.5967560810824 1057.8601684381456 803.6042420478153 1058.159794139809 807.0 1066.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c207" name="c207" refID="e30" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="808.0" y="581.9896921094644"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="808.0 1066.0 832.594019709885 581.9896921094644" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="829.5978851688358 581.8374495006713 835.5901542509341 582.1419347182575 833.0 574.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="798.0" y="1066.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="20.0" height="20.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,17618271
DAI subsequently recruits TBK1, which triggers IRF3 phosphorylation and type I IFN gene expression</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p72" name="p72" type="cso30:c:ProcessBiological">
<csml:connector id="c208" name="c208" refID="e30" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="779.2881068349136" y="574.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="832.0 574.0 779.2881068349136 897.1043821785848" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="782.2489635179443 897.5874222416775 776.3272501518829 896.6213421154922 777.9999999999999 905.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c209" name="c209" refID="e35" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="729.629976047529" y="926.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="769.0 926.0 729.629976047529 981.4759428421182" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="732.0764974817347 983.2121838599415 727.1834546133234 979.7397018242948 725.0000000000001 987.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="765.0" y="905.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,17618271
DAI subsequently recruits TBK1, which triggers IRF3 phosphorylation and type I IFN gene expression</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p73" name="p73" type="cso30:c:ProcessBiological">
<csml:connector id="c211" name="c211" refID="MO000000289" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="329.0" y="1014.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="329.0 1014.0 419.0 1014.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="419.0 1011.0 419.0 1017.0 427.0 1014.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c83" name="c83" refID="MO000000206" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="389.0" y="981.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="389.0 981.0 420.39754191000134 1002.4825286752641" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="422.0915936567773 1000.0066068915146 418.70349016322535 1004.9584504590135 427.0 1007.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c210" name="c210" refID="MO000038687" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="392.8" y="1024.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="430.0 1024.0 392.8 1073.6" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="395.2 1075.3999999999999 390.4 1071.8 388.0 1079.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="427.0" y="1003.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">

PMID: 18353649,17003035
Additional evidence for crosstalk between the two signaling pathways is provided by IKK-var epsilon-mediated phosphorylation of p65 in TNF-alpha-stimulated cells</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p74" name="p74" type="cso30:c:ProcessBiological">
<csml:connector id="c213" name="c213" refID="MO000080947" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="472.02511761560123" y="428.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="474.0 428.0 472.02511761560123 1057.0000394310105" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="475.0251028289723 1057.0094585368608 469.0251324022302 1056.9906203251599 472.0 1064.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c136" name="c136" refID="MO000016608" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="481.64528479831074" y="266.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="887.0 266.0 481.64528479831074 1057.8787712619799" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="484.3157455750683 1059.2457530613465 478.97482402155316 1056.5117894626135 478.0 1065.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c231" name="c231" refID="MO000038687" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="392.0" y="1079.6994371546484"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector depth="0" points="392.0 1093.0 453.1825890886176 1079.6994371546484" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="452.54530015562443 1076.76790806288 453.8198780216107 1082.6309662464168 460.99999999999994 1078.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c215" name="c215" refID="e93" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="477.0" y="1086.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="477.0 1086.0 505.33085664183795 1140.891034743561" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="507.99671861300254 1139.5151059842503 502.66499467067337 1142.266963502872 508.99999999999994 1148.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="461.0" y="1065.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,17003035
Additional evidence for crosstalk between the two signaling pathways is provided by IKK-var epsilon-mediated phosphorylation of p65 in TNF-alpha-stimulated cells</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p75" name="p75" type="cso30:c:ProcessBiological">
<csml:connector id="c220" name="c220" refID="MO000000207" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="443.0" y="1219.1676940130167"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="443.0 1259.0 475.90494842402967 1219.1676940130167" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="473.5920631691484 1217.2570496720277 478.21783367891095 1221.0783383540054 481.0 1213.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c217" name="c217" refID="e44" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="489.4468537264198" y="622.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="521.0 622.0 489.4468537264198 1186.0124896402456" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="492.44217011132775 1186.180059787653 486.45153734151194 1185.844919492838 489.0 1194.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c230" name="c230" refID="e95" type="cso30:c:InputInhibitor">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="500.83698803634337" y="1163.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:inhibitoryConnector name="default" depth="0" points="626.0 1163.0 500.83698803634337 1199.8697244544105" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<bioInhibitoryConnectorArrow size="4.0 14.0" pointsInAbsoluteCoordinate="502.814970241125 1206.5844535180115 498.85900583156166 1193.1549953908097 495.0220177952183 1194.2852709363992 498.97798220478165 1207.714729063601"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c277" name="c277" refID="MO000038687" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="392.0" y="1111.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector depth="0" points="392.0 1111.0 472.2436351065243 1188.444438533041" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="474.326970656634 1186.2858016979876 470.16029955641466 1190.6030753680943 478.0 1194.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c216" name="c216" refID="e94" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="490.0" y="762.8766374468665"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="490.0 1194.0 566.6005063306251 762.8766374468665" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="563.6467672880501 762.3518273208509 569.5542453731999 763.4014475728821 568.0 755.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="478.0" y="1194.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
TNF-alpha triggers NF-&#954;B activation through TRADD and the classical, NEMO-dependent pathway, which involves IKK-&#946;-mediated I&#954;Bgreek small letter alpha phosphorylation and subsequent degradation.  

PMID: 18353649
For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-&#954;B and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p76" name="p76" type="cso30:c:ProcessBiological">
<csml:connector id="c96" name="c96" refID="e48" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="565.0" y="869.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="565.0 869.0 590.9380773777618 931.6091522911491" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="593.7096452685809 930.4609313078098 588.1665094869427 932.7573732744885 594.0 939.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c222" name="c222" refID="G011131" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="603.0" y="960.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="603.0 960.0 627.0911730485452 1003.0199518724022" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="629.7086910963944 1001.5541417656067 624.4736550006961 1004.4857619791977 631.0 1010.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="587.0" y="939.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
The p50&#8211;p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p77" name="p76" type="cso30:c:ProcessBiological">
<csml:connector id="c223" name="c223" refID="e48" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="570.0" y="861.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="570.0 861.0 659.9190713621243 908.2770375202922" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="661.3151822920148 905.6216892810888 658.522960432234 910.9323857594956 667.0 912.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c224" name="c224" refID="e89" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="681.0" y="928.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="681.0 928.0 686.1228757351688 949.2233423314137" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="689.0391223608887 948.519420732102 683.206629109449 949.9272639307254 688.0 957.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="667.0" y="907.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
The p50&#8211;p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p78" name="p76" type="cso30:c:ProcessBiological">
<csml:connector id="c225" name="c225" refID="e48" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="569.0" y="869.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="569.0 869.0 669.2435979143598 1004.5675324175152" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="671.6557732577917 1002.7838816354001 666.8314225709281 1006.3511831996302 674.0 1011.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c226" name="c226" refID="G010405" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="692.0" y="1025.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="692.0 1025.0 743.4631789462583 1043.3174026757868" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="744.4691529428382 1040.4910947806336 742.4572049496783 1046.14371057094 750.9999999999999 1046.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="671.0" y="1011.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10068" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_GeneExpression" refCellComponentID="cso30:i:CC_Nucleoplasm">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
The p50&#8211;p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p79" name="p79" type="cso30:c:ProcessBiological">
<csml:connector id="c227" name="c227" refID="G010405" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="762.0" y="1061.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="762.0 1061.0 765.5902819842147 1131.0104986921872" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="768.5863449746445 1130.8568544362677 762.5942189937849 1131.1641429481067 766.0 1138.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c228" name="c228" refID="MO000016591" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="766.0" y="1160.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="766.0 1160.0 766.0 1200.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="769.0 1200.0 763.0 1200.0 766.0 1208.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="755.0" y="1139.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10031" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
The p50&#8211;p65 heterodimer translocates into the nucleus to drive the expression of multiple genes, including TANK, IKK-epsilon and A20.
</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p80" name="p80" type="cso30:c:ProcessBiological">
<csml:connector id="c229" name="c229" refID="MO000016591" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="776.0" y="1212.1055682552917"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="776.0 1217.0 811.0767608370761 1212.1055682552917" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="810.6621727413417 1209.1343535691951 811.4913489328105 1215.076782941388 819.0 1211.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c36" name="c36" refID="MO000000065" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="833.3095287328448" y="295.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="982.0 295.0 833.3095287328448 1191.1079068367223" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="836.269063669074 1191.598980111539 830.3499937966156 1190.6168335619054 832.0000000000001 1199.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:connector id="c232" name="c232" refID="e95" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="665.7047053669884" y="1164.1534890777298"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="819.0 1207.0 665.7047053669884 1164.1534890777298" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="664.8971469628398 1167.0427535903505 666.512263771137 1161.264224565109 658.0 1162.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="819.0" y="1199.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-&#954;B and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p81" name="p81" type="cso30:c:ProcessBiological">
<csml:connector id="c233" name="c233" refID="e95" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="586.7008847747089" y="1121.3701422443753"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="626.0 1147.0 586.7008847747089 1121.3701422443753" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="585.0620814330682 1123.882974034891 588.3396881163497 1118.8573104538593 580.0000000000001 1116.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c214" name="c214" refID="MO000019479" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="448.19868357765336" y="912.8096296679588"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector depth="0" points="563.0 1099.0 448.19868357765336 912.8096296679588" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="445.6450724521688 914.3841360095788 450.75229470313786 911.2351233263388 444.0 906.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="559.0" y="1099.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10012" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownDegradation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-&#954;B and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p83" name="p83" type="cso30:c:ProcessBiological">
<csml:connector id="c235" name="c235" refID="MO000016591" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="605.4832142536907" y="725.6048436519278"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="763.0 1208.0 605.4832142536907 725.6048436519278" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="602.6313978842178 726.5360489970618 608.3350306231637 724.6736383067938 603.0 718.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c236" name="c236" refID="e25" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="604.7641695155405" y="352.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="681.0 352.0 604.7641695155405 689.1969425274167" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="607.6903160677592 689.8585060957444 601.8380229633218 688.5353789590889 603.0 696.9999999999999"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c237" name="c237" refID="e96" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="610.0" y="697.6279775337206"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="610.0 707.0 729.0246853217479 697.6279775337206" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="728.7891937466027 694.6372345293761 729.2601768968932 700.6187205380651 736.9999999999999 697.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="589.0" y="697.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649,15258597,15661910
For example, the TNF-alpha-inducible A20 protein negatively regulates both NF-&#954;B and IRF3-activating pathways by promoting the K48-linked, degradative polyubiquitylation of the receptor-interacting protein (RIP1) in TNF-alpha-stimulated cells or by preventing IRF3 dimerization through direct binding to TBK1 and IKK-var epsilon in dsRNA-stimulated or Newcastle virus-infected cells, respectively</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p82" name="p82" type="cso30:c:ProcessBiological">
<csml:connector id="c242" name="c242" refID="e97" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1020.0" y="1198.8128547924575"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1020.0 1300.0 1042.2797383943212 1198.8128547924575" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1039.3499178471495 1198.167756690328 1045.2095589414928 1199.457952894587 1043.9999999999998 1190.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c243" name="c243" refID="MO000000196" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1012.4774036933123" y="1191.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1038.0 1191.0 1012.4774036933123 1218.169215423248" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1014.6639479095943 1220.2232418082401 1010.2908594770304 1216.1151890382557 1007.0 1223.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1036.0" y="1172.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10133" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Processing" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
A second crosstalk is established between IKK-epsilon and p100, an inhibitory molecule whose processing into p52 is triggered following stimulation with lymphotoxin-&#946;

PMID: 18353649
p100 is subsequently processed into p52 and moves into the nucleus as a heterodimer with the NF-&#954;B protein RelB</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p84" name="p84" type="cso30:c:ProcessBiological">
<csml:connector id="c239" name="c239" refID="MO000013731" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1314.0" y="1208.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1314.0 1208.0 1314.0 1248.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1317.0 1248.0 1311.0 1248.0 1314.0 1256.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c240" name="c240" refID="MO000016981" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1254.0" y="1226.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1254.0 1226.0 1297.3231247475062 1254.593262333354" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1298.9756513724983 1252.0894341136689 1295.6705981225139 1257.0970905530392 1304.0 1259.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c241" name="c241" refID="e98" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1258.7347025773502" y="1269.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1304.0 1269.0 1258.7347025773502 1280.9568710173037" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1259.5008759458613 1283.85738448381 1257.968529208839 1278.0563575507974 1251.0 1283.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1304.0" y="1256.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
A second crosstalk is established between IKK-epsilon and p100, an inhibitory molecule whose processing into p52 is triggered following stimulation with lymphotoxin-&#946;</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p85" name="p85" type="cso30:c:ProcessBiological">
<csml:connector id="c245" name="c245" refID="MO000016608" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="892.0" y="266.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="892.0 266.0 921.7372721342138 1171.0043152845712" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="924.7356539024995 1170.9057923349014 918.738890365928 1171.102838234241 922.0 1179.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c246" name="c246" refID="MO000000202" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="939.9900187110228" y="1186.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="992.0 1186.0 939.9900187110228 1188.600499064449" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="940.1398315618545 1191.5967560810825 939.8402058601912 1185.6042420478154 932.0000000000001 1189.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c247" name="c247" refID="MO000000196" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="938.9459451369956" y="1199.9691115068547"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="988.0 1228.0 938.9459451369956 1199.9691115068547" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="937.4575283219251 1202.573840933228 940.4343619520661 1197.3643820804812 931.9999999999999 1196.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="911.0" y="1179.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
IKK-epsilon expression is also induced in TNF-alpha-stimulated cells, and this kinase associates with p100 and p52 to enhance the transactivation potential of specific p52&#8211;p65 heterodimers</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p86" name="p86" type="cso30:c:ProcessBiological">
<csml:connector id="c248" name="c248" refID="MO000000210" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="485.0" y="231.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="485.0 231.0 904.9017665608428 1230.624300063283" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="907.6676540371117 1229.462462523599 902.1358790845738 1231.7861376029668 908.0 1238.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c249" name="c249" refID="MO000000202" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="927.5842074051469" y="1193.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="992.0 1193.0 927.5842074051469 1237.455969537293" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="929.288218828662 1239.925047314223 925.8801959816318 1234.986891760363 921.0 1242.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c255" name="c255" refID="e99" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="928.8883650844857" y="1251.3318018973807"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1075.0 1276.0 928.8883650844857 1251.3318018973807" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="928.3889393729679 1254.2899388040628 929.3877907960034 1248.3736649906984 921.0 1250.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c250" name="c250" refID="e97" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="921.0" y="1253.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="921.0 1253.0 1001.0984162392187 1299.9542440023006" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1002.615574738356 1297.3661500920075 999.5812577400815 1302.5423379125934 1008.0 1303.9999999999998"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="902.0" y="1238.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
This pathway, which requires TRAF2 and TRAF5 and is negatively regulated by TRAF3, triggers NIK activation and IKK-alpha-mediated p100 phosphorylation</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p87" name="p87" type="cso30:c:ProcessBiological">
<csml:connector id="c244" name="c244" refID="e98" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1169.6889582922297" y="1185.4817952863177"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1233.0 1273.0 1169.6889582922297 1185.4817952863177" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1167.2582850598606 1187.2401546459039 1172.1196315245988 1183.7234359267316 1164.9999999999998 1179.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c251" name="c251" refID="MO000016965" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1158.0" y="1187.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1158.0 1228.0 1158.0 1187.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1155.0 1187.0 1161.0 1187.0 1158.0 1179.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c252" name="c252" refID="MO000000209" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1112.0" y="1154.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="1112.0 1154.0 1140.4755688024663 1164.2828442897796" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1141.494502193799 1161.4611825907045 1139.4566354111337 1167.1045059888547 1148.0 1167.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c253" name="c253" refID="MO000000203" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1085.0" y="1181.437601569802"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1085.0 1219.0 1141.3435976452972 1181.437601569802" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1139.6794970566216 1178.9414506867884 1143.0076982339729 1183.9337524528155 1148.0 1177.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c256" name="c256" refID="MO000016963" type="cso30:c:InputInhibitor">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1103.0" y="241.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:inhibitoryConnector name="default" depth="0" points="1103.0 241.0 1156.7653666232343 1156.0068875324494" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<bioInhibitoryConnectorArrow size="4.0 14.0" pointsInAbsoluteCoordinate="1163.7533134414477 1155.5962791231093 1149.7774198050208 1156.4174959417894 1150.0120531817865 1160.41060840934 1163.9879468182135 1159.58939159066"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c254" name="c254" refID="e99" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1097.4550114420476" y="1179.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="1152.0 1179.0 1097.4550114420476 1260.3552371711833" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="1099.946797502854 1262.0258664619512 1094.9632253812415 1258.6846078804156 1093.0 1267.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="1148.0" y="1160.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10003" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_UnknownActivation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
This pathway, which requires TRAF2 and TRAF5 and is negatively regulated by TRAF3, triggers NIK activation and IKK-alpha-mediated p100 phosphorylation. </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p88" name="p88" type="cso30:c:ProcessBiological">
<csml:connector id="c257" name="c257" refID="MO000000196" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="946.544030462707" y="1244.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="991.0 1244.0 946.544030462707 1308.4157925948532" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="949.0131082396371 1310.1198040183683 944.0749526857769 1306.711781171338 942.0 1315.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c258" name="c258" refID="MO000000194" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="857.0" y="1326.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="857.0 1326.0 915.0 1326.0" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="915.0 1323.0 915.0 1329.0 923.0 1326.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c259" name="c259" refID="e100" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="847.068230803076" y="1279.747013919703"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="923.0 1320.0 847.068230803076 1279.747013919703" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="845.6631005831873 1282.3976004708566 848.4733610229645 1277.0964273685495 839.9999999999999 1276.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="923.0" y="1315.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
p100 is subsequently processed into p52 and moves into the nucleus as a heterodimer with the NF-&#954;B protein RelB</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p89" name="p89" type="cso30:c:ProcessBiological">
<csml:connector id="c260" name="c260" refID="e100" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="737.6462320697756" y="1241.3526867907"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="821.0 1267.0 737.6462320697756 1241.3526867907" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="736.763974523263 1244.220023816866 738.5284896162881 1238.4853497645342 729.9999999999999 1239.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c261" name="c261" refID="e101" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="682.8552865618956" y="1081.7818964123953"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="717.0 1225.0 682.8552865618956 1081.7818964123953" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="679.9370754072473 1082.4776288731061 685.7734977165437 1081.0861639516845 681.0 1074.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="709.0" y="1225.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10027" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Translocation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
p100 is subsequently processed into p52 and moves into the nucleus as a heterodimer with the NF-&#954;B protein RelB</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p90" name="p90" type="cso30:c:ProcessBiological">
<csml:connector id="c262" name="c262" refID="e20" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="658.3409919128368" y="302.87768608679755"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="808.0 418.0 658.3409919128368 302.87768608679755" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="656.5118596302877 305.25555805411136 660.1701241953859 300.49981411948374 652.0 298.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c263" name="c263" refID="MO000000248" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="589.0" y="216.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="589.0 216.0 632.3409173245781 276.4966970988902" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="634.7796559124943 274.74954109560696 629.9021787366619 278.24385310217343 637.0 283.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c264" name="c264" refID="e102" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="608.5631853341599" y="298.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="635.0 298.0 608.5631853341599 316.42565870649463" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="610.2785633192244 318.8868532068046 606.8478073490954 313.96446420618463 602.0 321.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="635.0" y="283.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="17.0" height="17.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10005" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Binding" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
TANK also connects IKK-var epsilon and TBK1 to the IKK complex through binding to NEMO for subsequent p65 phosphorylation </csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p91" name="p91" type="cso30:c:ProcessBiological">
<csml:connector id="c266" name="c266" refID="MO000019326" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="524.0048536786446" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="641.0 348.0 524.0048536786446 1272.0633590805357" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="526.9810940234437 1272.4401792100275 521.0286133338454 1271.686538951044 523.0 1280.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c267" name="c267" refID="MO000019331" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="525.8679010975817" y="318.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="755.0 318.0 525.8679010975817 1272.221121836045" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="528.7849804090647 1272.9215847476382 522.9508217860986 1271.520658924452 524.0 1280.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c268" name="c268" refID="e5" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="527.5572750077215" y="121.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="916.0 121.0 527.5572750077215 1272.4197398108718" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="530.3998725786446 1273.3787179387673 524.7146774367984 1271.4607616829762 525.0 1280.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c265" name="c265" refID="e103" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="531.0" y="1275.035946394237"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="531.0 1288.0 580.2634037018988 1275.035946394237" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="579.4999238040599 1272.1347227824492 581.0268835997377 1277.937170006025 588.0 1273.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="512.0" y="1280.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
TBK1 and IKK-var epsilon phosphorylate TANK in macrophages and also are required for LPS-mediated TANK polyubiquitylation, independently of their kinase activity.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p92" name="p91" type="cso30:c:ProcessBiological">
<csml:connector id="c270" name="c270" refID="MO000016608" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="719.5689290811055" y="266.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="890.0 266.0 719.5689290811055 1118.1553545944726" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="722.5106711081783 1118.743702999887 716.6271870540328 1117.567006189058 718.0 1126.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c271" name="c271" refID="e5" type="cso30:c:InputAssociation">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="719.5614215284768" y="121.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:associationConnector name="default" depth="0" points="918.0 121.0 719.5614215284768 1118.1538568194042" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<associationConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="722.5037252212002 1118.739389892583 716.6191178357534 1117.5683237462254 718.0 1126.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">


indirect</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c274" name="c274" refID="MO000019326" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="643.0" y="348.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="643.0 348.0 714.2627903158346 1118.0340398016579" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="717.250025390213 1117.757586170096 711.2755552414562 1118.31049343322 715.0 1126.0000000000002"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c269" name="c269" refID="e103" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="612.2791292043919" y="1145.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="708.0 1145.0 612.2791292043919 1253.989110311831" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="614.5332128374553 1255.9687837634779 610.0250455713285 1252.009436860184 607.0 1260.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="706.0" y="1126.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="19.0" height="19.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10001" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Phosphorylation" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
TBK1 and IKK-var epsilon phosphorylate TANK in macrophages and also are required for LPS-mediated TANK polyubiquitylation, independently of their kinase activity.</csml:comment>
</csml:comments>
</csml:process>
<csml:process id="p93" name="p93" type="cso30:c:ProcessBiological">
<csml:connector id="c272" name="c272" refID="e103" type="cso30:c:InputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="586.0183750985082" y="1280.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="594.0 1280.0 586.0183750985082 1299.5912611218437" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="588.7966521778168 1300.7231517837843 583.2400980191995 1298.459370459903 583.0 1307.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:connector id="c273" name="c273" refID="e104" type="cso30:c:OutputProcess">
<csml:connectorSimulationProperty>
<csml:connectorFiring connectorFiringStyle="csml-connectorFiringStyle:threshold" value="0"/>
<csml:connectorKinetic>
<csml:parameter key="stoichiometry" value="1"/>
</csml:connectorKinetic>
</csml:connectorSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="588.0" y="1319.0"/>
<csml:shape shapeID="default" visible="true">
<csml:toolSpecificGraphics>
<fig:figure xmlns:fig="http://www.csml.org/csml/cigraphics">
<fig:processConnector name="default" depth="0" points="588.0 1319.0 656.0683656356597 1327.9563638994289" visible="true"/>
</fig:figure>
<targetArrow xmlns="http://www.csml.org/csml/cigraphics">
<processConnectorArrow size="8.0 6.0" points="0.0 0.0 0.0 6.0 8.0 3.0" pointsInAbsoluteCoordinate="656.4597291733738 1324.9820010128012 655.6770020979455 1330.9307267860565 664.0 1329.0"/>
</targetArrow>
</csml:toolSpecificGraphics>
</csml:shape>
</csml:viewProperty>
<csml:comments>
<csml:comment type="text">

</csml:comment>
</csml:comments>
</csml:connector>
<csml:processSimulationProperty>
<csml:priority value="0"/>
<csml:firing firingStyle="csml-firingStyle:and" firingOnce="false" type="csml-variable:Boolean" value="true"/>
<csml:delay delayStyle="nodelay" value="0.0"/>
<csml:processKinetic calcStyle="csml-calcStyle:speed" kineticStyle="csml-kineticStyle:mass" fast="false">
<csml:parameter key="coefficient1" value="0.1"/>
<csml:parameter key="coefficient2" value="1.0"/>
</csml:processKinetic>
</csml:processSimulationProperty>
<csml:viewProperty>
<csml:position positionID="default" position="auto" x="567.0" y="1307.0"/>
<csml:shape shapeID="default" visible="true">
<csml:image width="21.0" height="21.0" filePath="" fileType="resourceFile" fileFormat="svg" resourceID="10033" outlineColor="0 0 0 0"></csml:image>
<csml:toolSpecificGraphics/>
</csml:shape>
</csml:viewProperty>
<csml:biologicalProperty refBiologicalEventID="cso30:i:ME_Ubiquitination" refCellComponentID="cso30:i:CC_Cytosol">
<csml:property key="relationType" value="Type 0"/>
<csml:property key="edgeScore" value="1.0"/>
</csml:biologicalProperty>
<csml:comments>
<csml:comment type="text">


PMID: 18353649
TBK1 and IKK-var epsilon phosphorylate TANK in macrophages and also are required for LPS-mediated TANK polyubiquitylation, independently of their kinase activity.</csml:comment>
</csml:comments>
</csml:process>
</csml:processSet>
<csml:factSet>
<csml:fact id="g2" name="g1" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e12" name="participant-e12" refID="e12" type="csml-element:participant"/>
<csml:participant id="participant-e11" name="participant-e11" refID="e11" type="csml-element:participant"/>
<csml:participant id="participant-e6" name="participant-e6" refID="e6" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g1" name="g1" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e1" name="participant-e1" refID="e1" type="csml-element:participant"/>
<csml:participant id="participant-e3" name="participant-e3" refID="e3" type="csml-element:participant"/>
<csml:participant id="participant-e4" name="participant-e4" refID="e4" type="csml-element:participant"/>
<csml:participant id="participant-e2" name="participant-e2" refID="e2" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g12" name="g2" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e51" name="participant-e51" refID="e51" type="csml-element:participant"/>
<csml:participant id="participant-e59" name="participant-e59" refID="e59" type="csml-element:participant"/>
<csml:participant id="participant-e56" name="participant-e56" refID="e56" type="csml-element:participant"/>
<csml:participant id="participant-e53" name="participant-e53" refID="e53" type="csml-element:participant"/>
<csml:participant id="participant-e57" name="participant-e57" refID="e57" type="csml-element:participant"/>
<csml:participant id="participant-g13" name="participant-g13" refID="g13" type="csml-element:participant"/>
<csml:participant id="participant-e52" name="participant-e52" refID="e52" type="csml-element:participant"/>
<csml:participant id="participant-e58" name="participant-e58" refID="e58" type="csml-element:participant"/>
<csml:participant id="participant-e54" name="participant-e54" refID="e54" type="csml-element:participant"/>
<csml:participant id="participant-e50" name="participant-e50" refID="e50" type="csml-element:participant"/>
<csml:participant id="participant-e55" name="participant-e55" refID="e55" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g13" name="g2" type="cso30:c:FactViewGroup">
<csml:participant id="participant-e60" name="participant-e60" refID="e60" type="csml-element:participant"/>
<csml:participant id="participant-e62" name="participant-e62" refID="e62" type="csml-element:participant"/>
<csml:participant id="participant-e61" name="participant-e61" refID="e61" type="csml-element:participant"/>
</csml:fact>
<csml:fact id="g14" name="g1" type="cso30:c:FactViewGroup"/>
</csml:factSet>
<csml:modelSimulationProperty>
<csml:parameter key="enhancedFiring" value="true"/>
<csml:parameter key="discreteWeakFiring" value="false"/>
<csml:parameter key="continousWeakFiring" value="false"/>
<csml:parameter key="samplingInterval" value="0.1"/>
<csml:parameter key="plotUpdateInterval" value="1.0"/>
<csml:parameter key="logUpdateInterval" value="1.0"/>
<csml:parameter key="simulationTime" value="1000.0"/>
<csml:parameter key="firingAccuracy" value="1.0E-10"/>
</csml:modelSimulationProperty>
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:model>
<csml:subModelSet/>
<csml:viewSet>
<csml:view name="Default View" viewID="default" refModelID="undef" refShapeID="default" refPositionID="default" refAnimationID="default"/>
</csml:viewSet>
<csml:references>
<csml:unificationXref unificationXrefID="ref489" name="MO000016882" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016882" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref490" name="IPR000157" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000157" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref491" name="IPR003591" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003591" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref492" name="IPR000887" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000887" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref493" name="IPR000483" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000483" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref494" name="IPR001611" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001611" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref495" name="MO000019394" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019394" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref496" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref497" name="MO000019331" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019331" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref498" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref499" name="MO000016608" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016608" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref500" name="IPR007087" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007087" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref501" name="MO000019326" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019326" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref502" name="IPR007087" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007087" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref503" name="MO000016599" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016599" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref504" name="IPR000157" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000157" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref505" name="IPR003591" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003591" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref506" name="IPR000483" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000483" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref507" name="IPR001611" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001611" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref508" name="IPR000372" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000372" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref509" name="MO000019398" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019398" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref510" name="MO000041446" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041446" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref511" name="MO000022224" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000022224" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref512" name="MO000041125" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041125" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref513" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref514" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref515" name="IPR000345" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000345" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref516" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref517" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref518" name="MO000016963" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016963" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref519" name="MO000042126" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000042126" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref520" name="MO000042007" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000042007" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref521" name="MO000042012" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000042012" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref522" name="MO000007702" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007702" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref523" name="IPR008984" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008984" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref524" name="IPR001346" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001346" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref525" name="MO000007694" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007694" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref526" name="IPR008984" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008984" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref527" name="IPR001346" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001346" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref528" name="MO000007694" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007694" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref529" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref530" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref531" name="IPR000504" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000504" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref532" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref533" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref534" name="MO000000212" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000212" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref535" name="MO000022125" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000022125" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref536" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref537" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref538" name="IPR001245" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001245" db="INTERPRO">
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref539" name="MO000016574" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016574" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">




</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref540" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref541" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref542" name="IPR002290" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002290" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref543" name="IPR001245" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001245" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref544" name="MO000000210" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000210" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref545" name="MO000000248" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000248" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref546" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref547" name="IPR000626" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000626" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref548" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref549" name="IPR001245" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001245" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref550" name="MO000000211" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000211" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref551" name="MO000000248" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000248" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref552" name="IPR008967" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008967" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref553" name="IPR000451" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000451" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref554" name="IPR002909" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002909" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref555" name="IPR007110" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007110" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref556" name="MO000080947" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000080947" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref557" name="IPR002110" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002110" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref558" name="MO000000233" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000233" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref559" name="IPR000008" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000008" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref560" name="IPR003892" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003892" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref561" name="IPR008973" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008973" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref562" name="MO000019406" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019406" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref563" name="MO000068831" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000068831" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref564" name="IPR000157" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000157" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref565" name="IPR004075" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR004075" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref566" name="IPR000488" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000488" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref567" name="MO000016573" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016573" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref568" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref569" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref570" name="IPR000488" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000488" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref571" name="MO000000213" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000213" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref572" name="MO000039077" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000039077" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref573" name="MO000041541" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000041541" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref574" name="MO000066987" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000066987" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref575" name="MO000103999" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000103999" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref576" name="MO000090351" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000090351" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref577" name="MO000094908" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000094908" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref578" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref579" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref580" name="IPR000345" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000345" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref581" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref582" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref583" name="MO000016963" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016963" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">






</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref584" name="MO000007702" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000007702" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref585" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref586" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref587" name="IPR000504" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000504" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref588" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref589" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref590" name="MO000000212" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000212" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">





</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref591" name="IPR003636" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003636" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref592" name="IPR008983" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008983" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref593" name="IPR006052" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006052" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref594" name="IPR006053" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006053" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref595" name="IPR002959" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002959" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref596" name="MO000000289" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000289" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref597" name="IPR008967" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008967" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref598" name="IPR000451" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000451" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref599" name="IPR002909" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002909" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref600" name="IPR007110" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007110" db="INTERPRO">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref601" name="MO000080947" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000080947" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">



</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref602" name="IPR000488" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000488" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref603" name="MO000000207" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000207" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref604" name="G011131" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G011131" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref605" name="G011131" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G011131" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref606" name="G010405" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010405" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref607" name="G010405" xlink:href="http://www.biobase.de/cgi-bin/biobase/transfac/10.4/bin/start.cgi?ac=TransFac:G010405" db="TRANSFAC">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref608" name="IPR002653" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002653" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref609" name="IPR003323" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003323" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref610" name="MO000016591" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016591" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref611" name="MO000000202" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000202" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref612" name="MO000000196" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000196" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref613" name="IPR003636" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003636" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref614" name="IPR008983" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008983" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref615" name="IPR006052" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006052" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref616" name="IPR002961" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002961" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref617" name="IPR006053" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006053" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref618" name="MO000013731" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000013731" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref619" name="IPR001368" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001368" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref620" name="IPR008063" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008063" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref621" name="MO000016981" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016981" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref622" name="MO000000202" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000202" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref623" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref624" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref625" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref626" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref627" name="MO000000209" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000209" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref628" name="IPR001841" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001841" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref629" name="IPR002083" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002083" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref630" name="IPR000345" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000345" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref631" name="IPR001293" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001293" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref632" name="IPR008974" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008974" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref633" name="MO000016965" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000016965" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref634" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref635" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref636" name="MO000000203" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000203" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref637" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref638" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref639" name="MO000000203" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000203" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref640" name="IPR008967" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008967" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref641" name="IPR000451" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000451" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref642" name="IPR002909" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002909" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref643" name="IPR007110" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007110" db="INTERPRO">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref644" name="MO000000194" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000194" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">


</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref645" name="IPR007087" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007087" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref646" name="MO000019326" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019326" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref647" name="IPR007087" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR007087" db="INTERPRO">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref648" name="MO000019326" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019326" db="TRANSPATH">
<csml:comments>
<csml:comment type="text">







</csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref649" name="MO000061519" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000061519" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref650" name="IPR000198" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000198" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref651" name="IPR008936" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008936" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref652" name="MO000000065" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000065" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref653" name="IPR000719" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000719" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref654" name="IPR008271" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR008271" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref655" name="IPR001159" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001159" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref656" name="IPR001245" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001245" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref657" name="MO000008179" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000008179" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref658" name="MO000000200" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000200" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref659" name="IPR006209" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006209" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref660" name="IPR000345" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000345" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref661" name="IPR001368" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001368" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref662" name="IPR000488" xlink:href="http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000488" db="INTERPRO">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref663" name="MO000000206" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000000206" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref664" name="MO000038687" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000038687" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
<csml:unificationXref unificationXrefID="ref665" name="MO000019479" xlink:href="http://www.biobase.de/cgi-bin/biobase/transpath/8.4/bin/get.cgi?MO000019479" db="TRANSPATH">
<csml:comments>
<csml:comment type="text"></csml:comment>
</csml:comments>
</csml:unificationXref>
</csml:references>
</csml:project>
