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PMID: 18049472
It was also shown that microbial nucleic acids, lipids, polysaccharides or proteins trigger induction of IFNs through activation of TLRs.</csml:comment>
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PMID: 18049472
It was also shown that microbial nucleic acids, lipids, polysaccharides or proteins trigger induction of IFNs through activation of TLRs.</csml:comment>
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PMID: 18049472
It was also shown that microbial nucleic acids, lipids, polysaccharides or proteins trigger induction of IFNs through activation of TLRs.</csml:comment>
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PMID: 18049472
It was also shown that microbial nucleic acids, lipids, polysaccharides or proteins trigger induction of IFNs through activation of TLRs.</csml:comment>
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PMID: 18049472, 15208624
dsRNA is recognized by TLR3, which is present mostly in endosomal membranes4, and also by two cytoplasmic RNA helicases, retinoic acid-inducible gene I (RIG-I) and melanoma differentiation associated protein 5 (MDA5).</csml:comment>
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PMID: 18049472, 15208624
dsRNA is recognized by TLR3, which is present mostly in endosomal membranes4, and also by two cytoplasmic RNA helicases, retinoic acid-inducible gene I (RIG-I) and melanoma differentiation associated protein 5 (MDA5).</csml:comment>
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PMID: 18049472, 15208624
dsRNA is recognized by TLR3, which is present mostly in endosomal membranes4, and also by two cytoplasmic RNA helicases, retinoic acid-inducible gene I (RIG-I) and melanoma differentiation associated protein 5 (MDA5).</csml:comment>
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PMID: 18049472
It was also shown that microbial nucleic acids, lipids, polysaccharides or proteins trigger induction of IFNs through activation of TLRs.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472
It was also shown that microbial nucleic acids, lipids, polysaccharides or proteins trigger induction of IFNs through activation of TLRs.</csml:comment>
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PMID: 18049472
TLR3 dimerizes, binds to CD14 and activates the signalling complex assembled by TLR adaptor molecule 1 (TRIF).</csml:comment>
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PMID: 18049472
The cytoplasmic RNA helicases RIG-I and MDA5 recognize dsRNA or 5' triphosphorylated single-stranded (ss) RNA and use the mitochondrial membrane-bound protein IFN-beta-promoter stimulator 1 (IPS1; also known as VISA) as the specific adaptor.

PMID: 18049472, 15710892
For example, a hepatitis C virus (HCV)-encoded protease can cleave IPS1 off the mitochondrial membrane and block RIG-I/MDA5-mediated signalling.</csml:comment>
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PMID: 18049472
The cytoplasmic RNA helicases RIG-I and MDA5 recognize dsRNA or 5' triphosphorylated single-stranded (ss) RNA and use the mitochondrial membrane-bound protein IFN-beta-promoter stimulator 1 (IPS1; also known as VISA) as the specific adaptor.

PMID: 18049472, 15710892
For example, a hepatitis C virus (HCV)-encoded protease can cleave IPS1 off the mitochondrial membrane and block RIG-I/MDA5-mediated signalling.

PMID: 18049472, 17038589
NS1 protein of influenza viruses prevents establishment of an antiviral state through the interaction with RIG-I.</csml:comment>
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PMID; 18049472, 17190786
Other nucleic acids such as ssRNA, acting through TLR7 and TLR8, and bacterial oligodeoxyribonucleotides, acting through TLR9, are also potent inducers.

PMID: 18049472
They also function as dimers and recognize double-stranded (ds) RNA, single-stranded (ss) RNA or dsDNA containing CpG sequences. GPI, glycosylphosphatidylinisotol; LPS, lipopolysaccharide.</csml:comment>
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PMID; 18049472, 17190786
Other nucleic acids such as ssRNA, acting through TLR7 and TLR8, and bacterial oligodeoxyribonucleotides, acting through TLR9, are also potent inducers.

PMID: 18049472
They also function as dimers and recognize double-stranded (ds) RNA, single-stranded (ss) RNA or dsDNA containing CpG sequences. GPI, glycosylphosphatidylinisotol; LPS, lipopolysaccharide.</csml:comment>
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PMID; 18049472, 17190786
Other nucleic acids such as ssRNA, acting through TLR7 and TLR8, and bacterial oligodeoxyribonucleotides, acting through TLR9, are also potent inducers.

PMID: 18049472
They also function as dimers and recognize double-stranded (ds) RNA, single-stranded (ss) RNA or dsDNA containing CpG sequences. GPI, glycosylphosphatidylinisotol; LPS, lipopolysaccharide.</csml:comment>
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PMID: 18049472
TLR3 recognizes dsRNA in the lumen of the endosome, which causes phosphorylation of specific tyrosine residues in TLR3 by an unidentified protein tyrosine kinase (PTK).</csml:comment>
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PMID: 18049472
TLR3 dimerizes, binds to CD14 and activates the signalling complex assembled by TLR adaptor molecule 1 (TRIF).</csml:comment>
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PMID: 18049472
TLR3 dimerizes, binds to CD14 and activates the signalling complex assembled by TLR adaptor molecule 1 (TRIF).</csml:comment>
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PMID: 18049472
Two major pathways bifurcate from TRIF. One, composed of tumour necrosis factor (TNF) receptor-associated factor 3 (TRAF3) and TANK-binding kinase (TBK1/IKKE), leads to phosphorylation of the transcription factor IFN regulatory factor 3 (IRF3).</csml:comment>
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PMID: 18049472
Two major pathways bifurcate from TRIF. One, composed of tumour necrosis factor (TNF) receptor-associated factor 3 (TRAF3) and TANK-binding kinase (TBK1/IKKE), leads to phosphorylation of the transcription factor IFN regulatory factor 3 (IRF3).

PMID: 18049472, 16979567
IRFs are activated by the kinases TBK1 or IKK-epsilon activated IRFs then dimerize and translocate to the nucleus.</csml:comment>
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PMID: 18049472
Two major pathways bifurcate from TRIF. One, composed of tumour necrosis factor (TNF) receptor-associated factor 3 (TRAF3) and TANK-binding kinase (TBK1/IKKE), leads to phosphorylation of the transcription factor IFN regulatory factor 3 (IRF3).</csml:comment>
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PMID: 18049472
IRF3 requires further phosphorylation by the phosphatidylinositol 3-kinase (P13K)/AKT pathway for its full activation, which is initiated by binding PI3K to phosphorylated TLR3.</csml:comment>
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PMID: 18049472
IRF3 requires further phosphorylation by the phosphatidylinositol 3-kinase (P13K)/AKT pathway for its full activation, which is initiated by binding PI3K to phosphorylated TLR3.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.

PMID: 18049472
The IKK protein kinase complex phosphorylates IkappaB and releases it from NFkappaB.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.

PMID: 18049472
The IKK protein kinase complex phosphorylates IkappaB and releases it from NFkappaB.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The other branch acts through TRAF6 and transforming growth factor-beta-activated kinase 1 (TAK1; also known as MAP3K7) leading to the activation of nuclear factor-kappaB (NFkappaB), JUN and activating transcription factor 2 (ATF2) transcription factors.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
The activated transcription factors translocate from the cytoplasm to the nucleus, bind to the cognate sites in the promoters of the target genes and singly or in combinations induce their transcription.

PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.

PMID: 18049472, 16762830
Both TRIF and IPS1 recruit inhibitor of nuclear factor-kappaB (NFkappaB) kinase (IKK) and TANK-binding kinase (TBK1), the common activator kinases.

PMID: 18049472, 16979567
IRFs are activated by the kinases TBK1 or IKK-epsilon activated IRFs then dimerize and translocate to the nucleus.</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.

PMID: 18049472, 16979567
IRFs are activated by the kinases TBK1 or IKK-epsilon activated IRFs then dimerize and translocate to the nucleus.</csml:comment>
</csml:comments>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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<csml:comment type="text">
PMID: 18049472
IPS1 functions like TRIF and activates the same transcription factors leading to the induction of similar genes.</csml:comment>
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<csml:comment type="text">
PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472, 16762830
Both TRIF and IPS1 recruit inhibitor of nuclear factor-kappaB (NFkappaB) kinase (IKK) and TANK-binding kinase (TBK1), the common activator kinases.</csml:comment>
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PMID: 18049472, 16762830
Both TRIF and IPS1 recruit inhibitor of nuclear factor-kappaB (NFkappaB) kinase (IKK) and TANK-binding kinase (TBK1), the common activator kinases.</csml:comment>
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PMID: 18049472
Bacterial lipopolysaccharides induce IFNs through TLR4 and also recruit TRIF.</csml:comment>
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PMID: 18049472
Bacterial lipopolysaccharides induce IFNs through TLR4 and also recruit TRIF.</csml:comment>
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PMID: 18049472, 15710892
For example, a hepatitis C virus (HCV)-encoded protease can cleave IPS1 off the mitochondrial membrane and block RIG-I/MDA5-mediated signalling.</csml:comment>
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PMID: 18049472, 17038589
NS1 protein of influenza viruses prevents establishment of an antiviral state through the interaction with RIG-I.</csml:comment>
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PMID: 18049472, 11812998
the quinolinamine imiquimod and its analogues activate TLR7.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472, 17562815
DMXAA induces IFN synthesis through a TLR-independent pathway.</csml:comment>
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PMID: 18049472, 14991609
stimulation of TLR3 or TLR4 induces mostly IFN-beta and IFN-alpha1, which emphasizes the differences in the promoter sequences for the IFN-alphas, IFN-omega, and IFN-beta genes that govern the response to different inducers.</csml:comment>
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PMID: 18049472, 14991609
stimulation of TLR3 or TLR4 induces mostly IFN-beta and IFN-alpha1, which emphasizes the differences in the promoter sequences for the IFN-alphas, IFN-omega, and IFN-beta genes that govern the response to different inducers.</csml:comment>
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PMID: 18049472, 14991609
stimulation of TLR3 or TLR4 induces mostly IFN-beta and IFN-alpha1, which emphasizes the differences in the promoter sequences for the IFN-alphas, IFN-omega, and IFN-beta genes that govern the response to different inducers.</csml:comment>
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PMID: 18049472, 14991609
stimulation of TLR3 or TLR4 induces mostly IFN-beta and IFN-alpha1, which emphasizes the differences in the promoter sequences for the IFN-alphas, IFN-omega, and IFN-beta genes that govern the response to different inducers.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2.

PMID: 18049472, 17969444
They act through a cell-surface receptor composed of two ubiquitously expressed transmembrane proteins, IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2 (the genes for which are clustered on chromosome 21), and are associated with two cytoplasmic tyrosine kinases, TYK2 and JAK1.

PMID: 18049472, 17969444
Formation of the IFN&#8211;receptor complex involves one side of the IFN protein interacting with IFNAR2 in a region forming the hinge between the two fibronectin type III (FnIII) domains (Fig. 3); binding affinity is in the nanomolar range39. IFNAR1 binds IFNs with an affinity 1,000-fold weaker than that of IFNAR2, with a binding site located opposite to the IFNAR2 binding site. Binding studies are consistent with the ternary complex between IFNAR1, IFN and IFNAR2 having a 1:1:1 stoichiometry, and a similar if not identical architecture for all type I IFNs. Ternary complex assembly is a two-step process; the ligand binds first to one IFNAR and then recruits the second with no identified interaction between the two IFNARs.</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2; type II IFN-gamma with IFN-gamma receptor 1 (IFNGR1) and IFNGR2; and type III IFN-lambdas with IFN-lambda receptor 1 (IFNLR1; also known as IL28RA) and interleukin 10 receptor 2 (IL10R2; also known as IL10RB).

PMID; 18049472
Type II IFN-gamma is an antiparallel homodimer exhibiting a two-fold axis of symmetry. It binds two IFNGR1 receptor chains, assembling a complex that is stabilized by two IFNGR2 chains.

PMID: 18049472
Type II IFN-gamma is an antiparallel homodimer exhibiting a two-fold axis of symmetry. It binds two IFNGR1 receptor chains, assembling a complex that is stabilized by two IFNGR2 chains. These receptors are associated with two kinases from the JAK family: JAK1 and TYK2 for type I and III IFNs; JAK1 and JAK2 for type II IFN.

PMID: 18049472
IFN-gamma receptor 1 (IFNGR1) maps to chromosome 6 and has a JAK1 binding domain and a STAT1 docking site. IFNGR2 contains a JAK2 binding domain and maps to chromosome 21q22.1 in a cluster that also contains IFNAR1, IFNAR2 and interleukin 10 receptor 2 (IL10R2; also known as IL10RB).</csml:comment>
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PMID: 18049472
Type I interferons (IFNs) (alpha, beta omega, kappa, epsilon, delta (pigs), tau (ruminants)) interact with IFN (alpha, beta and omega) receptor 1 (IFNAR1) and IFNAR2; type II IFN-gamma with IFN-gamma receptor 1 (IFNGR1) and IFNGR2; and type III IFN-lambdas with IFN-lambda receptor 1 (IFNLR1; also known as IL28RA) and interleukin 10 receptor 2 (IL10R2; also known as IL10RB).

PMID: 18049472
These receptors are associated with two kinases from the JAK family: JAK1 and TYK2 for type I and III IFNs.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.

PMID: 18049472
Minimum requirements for a response to type I IFNs are the heterodimeric IFN receptor; the tyrosine kinases TYK2 and JAK1, which reciprocally transphosphorylate the receptor chains when activated.</csml:comment>
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PMID: 18049472, 15284232
STAT1 and STAT3 bind competitively to the same phosphotyrosine residue of IFNGR1, with the binding of STAT1 greatly favoured.</csml:comment>
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PMID: 18049472
Upon activation of receptors, the JAKs undergo autophosphorylation and transphosphorylation to increase their activity, and then phosphorylate the IFN receptors and finally STATs.</csml:comment>
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PMID: 18049472, 12169689
In at least some cell types, the p85 subunit of phosphatidylinositol 3-kinase (PI3K) is associated with IFNAR1. The activation of p85 by IFN leads to AKT phosphorylation and expression of the chemokine (C-X-C motif) ligand 11 (CXCL11) gene, encoding an important chemokine.</csml:comment>
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PMID: 18049472, 12169689
In at least some cell types, the p85 subunit of phosphatidylinositol 3-kinase (PI3K) is associated with IFNAR1. The activation of p85 by IFN leads to AKT phosphorylation and expression of the chemokine (C-X-C motif) ligand 11 (CXCL11) gene, encoding an important chemokine.</csml:comment>
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PMID: 18049472, 12169689
In at least some cell types, the p85 subunit of phosphatidylinositol 3-kinase (PI3K) is associated with IFNAR1. The activation of p85 by IFN leads to AKT phosphorylation and expression of the chemokine (C-X-C motif) ligand 11 (CXCL11) gene, encoding an important chemokine.

PMID: 18049472, 9625760, 2115167, 8798467
As examples, three closely related chemokines involved in accumulation of activated T cells and macrophages are the ISGs CXCL9 (also known as MIG, monokine induced by IFN-gamma); CXCL10 (also known as IP-10, IFN-gamma 10 kD inducible protein); and CXCL11 (also known as I-TAC, interferon-inducible T-cell alpha-chemoattractant)136, 137, 138, 139. True to their names, these chemokines are not expressed in the absence of IFN signalling.</csml:comment>
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PMID: 18049472, 12169689
In at least some cell types, the p85 subunit of phosphatidylinositol 3-kinase (PI3K) is associated with IFNAR1. The activation of p85 by IFN leads to AKT phosphorylation and expression of the chemokine (C-X-C motif) ligand 11 (CXCL11) gene, encoding an important chemokine.

PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.

PMID: 18049472, 9625760, 2115167, 8798467
As examples, three closely related chemokines involved in accumulation of activated T cells and macrophages are the ISGs CXCL9 (also known as MIG, monokine induced by IFN-gamma); CXCL10 (also known as IP-10, IFN-gamma 10 kD inducible protein); and CXCL11 (also known as I-TAC, interferon-inducible T-cell alpha-chemoattractant)136, 137, 138, 139. True to their names, these chemokines are not expressed in the absence of IFN signalling.</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472, 17969446
Serine 727 of STAT1 is phosphorylated in response to IFN-gamma by the kinase cascade PI3K&#8212;AKT&#8212;PKC&#8212;MKK4&#8212;p38 (MKK4, mitogen-activated protein kinase kinase 4; also known as MAP2K4), with some variation in the activation of different PKC or MKK proteins in different cells.</csml:comment>
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PMID: 18049472, 17969446
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PMID: 18049472, 17969446
Serine 727 of STAT1 is phosphorylated in response to IFN-gamma by the kinase cascade PI3K&#8212;AKT&#8212;PKC&#8212;MKK4&#8212;p38 (MKK4, mitogen-activated protein kinase kinase 4; also known as MAP2K4), with some variation in the activation of different PKC or MKK proteins in different cells.</csml:comment>
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PMID: 18049472, 17969446
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PMID: 18049472
IFN-dependent activation of PI3K, extracellular response kinases (ERKs) and p38 stimulates the phosphorylation of NFkappaB (but not IkappaB), AP-1 and possibly PU.1, respectively.</csml:comment>
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PMID: 18049472
IFN-dependent activation of PI3K, extracellular response kinases (ERKs) and p38 stimulates the phosphorylation of NFkappaB (but not IkappaB), AP-1 and possibly PU.1, respectively.</csml:comment>
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PMID: 18049472
IFN-dependent activation of PI3K, extracellular response kinases (ERKs) and p38 stimulates the phosphorylation of NFkappaB (but not IkappaB), AP-1 and possibly PU.1, respectively.</csml:comment>
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PMID: 18049472
IFN-dependent activation of PI3K, extracellular response kinases (ERKs) and p38 stimulates the phosphorylation of NFkappaB (but not IkappaB), AP-1 and possibly PU.1, respectively.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472
STAT1 is activated in response to both type I and type II IFNs and STAT3 is activated in response to gp130 cytokines such as IL6.</csml:comment>
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PMID: 18049472, 17510282
For example, unphosphorylated STAT3 activates a subset of kappaB-dependent genes by forming a complex with NFkappaB.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472, 272640
Viral dsRNA can directly activate one of several human OAS proteins to produce a unique 2'-to-5' linked oligoadenylate of 3&#8211;6 bases (2&#8211;5A) from ATP.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472, 272640
Viral dsRNA can directly activate one of several human OAS proteins to produce a unique 2'-to-5' linked oligoadenylate of 3&#8211;6 bases (2&#8211;5A) from ATP.</csml:comment>
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PMID: 18049472, 7876164, 6162102, 6165080
2&#8211;5A binding to RNASEL induces monomeric, inactive RNASEL to dimerize into a potent endoribonuclease that cleaves single-stranded regions of RNA on the 3' side of UpUp and UpAp dinucleotides.</csml:comment>
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PMID: 18049472, 7876164, 6162102, 6165080
2&#8211;5A binding to RNASEL induces monomeric, inactive RNASEL to dimerize into a potent endoribonuclease that cleaves single-stranded regions of RNA on the 3' side of UpUp and UpAp dinucleotides.

PMID: 18049472, 7680958
The only well-established function of 2&#8211;5A is activation of the ubiquitous, latent enzyme, RNASEL.</csml:comment>
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PMID: 18049472, 7876164, 6162102, 6165080
2&#8211;5A binding to RNASEL induces monomeric, inactive RNASEL to dimerize into a potent endoribonuclease that cleaves single-stranded regions of RNA on the 3' side of UpUp and UpAp dinucleotides.

PMID: 18049472, 17804500
The OAS&#8211;RNASEL pathway can inhibit the replication of encephalomyocarditis virus, Coxsackie virus B4, West Nile virus, some retroviruses and HCV.</csml:comment>
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PMID: 18049472, 9351818, 10200477, 9294150
Furthermore, degradation of cellular mRNA and rRNA by RNASEL damages the host cell machinery that is required for viral replication and can result in apoptosis, contributing to both antiviral and antitumour actions.</csml:comment>
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PMID: 18049472, 17653195
RNASEL also cleaves self-RNA into small degradation products that activate the recognition receptors, RIG-I and MDA5, to induce IFN-beta, similar to that of non-self viral RNA90, thus perpetuating and amplifying the production of IFN-beta.</csml:comment>
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PMID: 18049472, 17653195
RNASEL also cleaves self-RNA into small degradation products that activate the recognition receptors, RIG-I and MDA5, to induce IFN-beta, similar to that of non-self viral RNA90, thus perpetuating and amplifying the production of IFN-beta.</csml:comment>
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PMID: 18049472, 17653195
RNASEL also cleaves self-RNA into small degradation products that activate the recognition receptors, RIG-I and MDA5, to induce IFN-beta, similar to that of non-self viral RNA90, thus perpetuating and amplifying the production of IFN-beta.</csml:comment>
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PMID: 18049472, 17653195
RNASEL also cleaves self-RNA into small degradation products that activate the recognition receptors, RIG-I and MDA5, to induce IFN-beta, similar to that of non-self viral RNA90, thus perpetuating and amplifying the production of IFN-beta.</csml:comment>
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PMID: 18049472, 17653195
RNASEL also cleaves self-RNA into small degradation products that activate the recognition receptors, RIG-I and MDA5, to induce IFN-beta, similar to that of non-self viral RNA90, thus perpetuating and amplifying the production of IFN-beta.</csml:comment>
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PMID: 18049472, 1004583, 283387
The dsRNA-activated protein kinase (PKR) and OAS were the first enzymes identified that uniquely respond to IFNs.</csml:comment>
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PMID: 18049472, 9687506
In addition, the cellular protein PACT (also known as PRKRA) activates PKR in the absence of dsRNA.</csml:comment>
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PMID: 18049472
PKR mediates translational control by phosphorylating the protein synthesis initiation factor EIF2alpha, resulting in an inactive complex between EIF2&#8211;GDP and the recycling factor, EIF2B.</csml:comment>
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PMID: 18049472
PKR mediates translational control by phosphorylating the protein synthesis initiation factor EIF2alpha, resulting in an inactive complex between EIF2&#8211;GDP and the recycling factor, EIF2B.</csml:comment>
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PMID: 18049472
p56 and p54 bind to different subunits of EIF3 and block some of its diverse functions.</csml:comment>
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PMID: 18049472
p56 and p54 bind to different subunits of EIF3 and block some of its diverse functions.</csml:comment>
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Indirect</csml:comment>
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<csml:priority value="0"/>
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PMID: 18048472, 10224285, 11410525, 11568006
TRAIL/APO2L is an ISG that contributes to apoptosis and therefore probably to both the antiviral and antitumour effects of IFNs.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472, 15685448
Although many ISGs promote apoptosis, some promote cell survival. For example, the ISG G1P3 (or 6&#8211;16)116, 117 localizes to mitochondria and has anti-apoptotic actions, including inhibition of caspase-3.</csml:comment>
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Indirect</csml:comment>
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</csml:comment>
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<csml:comments>
<csml:comment type="text">
PMID: 18049472, 17579067
MHC class II proteins are selectively upregulated by IFN-gamma, whereas type I IFNs fail to do so owing to the STAT2-dependent induction of SOCS1.</csml:comment>
</csml:comments>
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PMID: 18049472, 17579067
MHC class II proteins are selectively upregulated by IFN-gamma, whereas type I IFNs fail to do so owing to the STAT2-dependent induction of SOCS1.</csml:comment>
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PMID: 18049472
IFNs also promote accumulation of leukocytes at sites of pathogen invasion; specifically, IFNs (along with cytokines such as TNFalpha and IL1beta), strongly promote the expression of vascular adhesion molecules including intracellular adhesion molecule 1 (ICAM1).</csml:comment>
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PMID: 18049472
IFNs also promote accumulation of leukocytes at sites of pathogen invasion; specifically, IFNs (along with cytokines such as TNFalpha and IL1beta), strongly promote the expression of vascular adhesion molecules including intracellular adhesion molecule 1 (ICAM1).</csml:comment>
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PMID: 18049472
IFNs also promote accumulation of leukocytes at sites of pathogen invasion; specifically, IFNs (along with cytokines such as TNFalpha and IL1beta), strongly promote the expression of vascular adhesion molecules including intracellular adhesion molecule 1 (ICAM1).</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472, 9625760, 2115167, 8798467
As examples, three closely related chemokines involved in accumulation of activated T cells and macrophages are the ISGs CXCL9 (also known as MIG, monokine induced by IFN-gamma); CXCL10 (also known as IP-10, IFN-gamma 10 kD inducible protein); and CXCL11 (also known as I-TAC, interferon-inducible T-cell alpha-chemoattractant)136, 137, 138, 139. True to their names, these chemokines are not expressed in the absence of IFN signalling.</csml:comment>
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PMID: 18049472
As one example, an IFN-beta ISG product, CD69, forms an inhibitory association with a sphingosine 1-phosphate receptor (S1PR).</csml:comment>
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PMID: 18049472, 9153530, 9007090, 9007089
Reduction in expression of matrix metalloproteinase 9 (MMP9) in activated lymphocytes and increased soluble vascular cell adhesion molecule (sVCAM) levels in plasma have also been identified and assigned putative roles in the beneficial effects of IFN-beta for patients with MS.</csml:comment>
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PMID: 18049472, 9153530, 9007090, 9007089
Reduction in expression of matrix metalloproteinase 9 (MMP9) in activated lymphocytes and increased soluble vascular cell adhesion molecule (sVCAM) levels in plasma have also been identified and assigned putative roles in the beneficial effects of IFN-beta for patients with MS.</csml:comment>
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Indirect</csml:comment>
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PMID: 18049472, 12766484, 14977850
Induction of apoptosis by the ISG products APO2L/TRAIL and Fas has been identified in many malignant cell types, as has induction of APO2L/TRAIL on immune effector cell surfaces, thus sensitizing tumour cells to T-cell, NK cell and macrophage-mediated cytotoxicity.</csml:comment>
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PMID: 18049472, 10417772, 12171874
Intralesional administration of IFN-alpha into basal cell carcinomas increased Fas expression and correlated with regression244. IFN-gamma has increased susceptibility to apoptosis by Fas activators and cytotoxic chemotherapies in many cell types including melanoma and colorectal carcinoma.</csml:comment>
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PMID: 18049472, 12029096, 16909101
Through interactions with p53 and the inhibitor of apoptosis, XIAP, the ISG product XAF1 may allow APO2L/TRAIL to fully activate downstream caspases.</csml:comment>
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PMID: 18049472, 12029096, 16909101
Through interactions with p53 and the inhibitor of apoptosis, XIAP, the ISG product XAF1 may allow APO2L/TRAIL to fully activate downstream caspases.</csml:comment>
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PMID: 18049472, 12029096, 16909101
Through interactions with p53 and the inhibitor of apoptosis, XIAP, the ISG product XAF1 may allow APO2L/TRAIL to fully activate downstream caspases.</csml:comment>
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PMID: 18049472, 1569446
In addition, IFN-gamma can upregulate the tumour-associated antigens, carcinoembryonic antigen and TAG72, both in vitro and in vivo.</csml:comment>
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PMID: 18049472, 1569446
In addition, IFN-gamma can upregulate the tumour-associated antigens, carcinoembryonic antigen and TAG72, both in vitro and in vivo.</csml:comment>
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PMID: 18049472, 1569446
In addition, IFN-gamma can upregulate the tumour-associated antigens, carcinoembryonic antigen and TAG72, both in vitro and in vivo.</csml:comment>
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PMID: 18049472, 12644537
IFNs also inhibit vascular endothelial growth factor (VEGF) mRNA and protein expression by regulating its promoter.</csml:comment>
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PMID: 18049472, 12644537
IFNs also inhibit vascular endothelial growth factor (VEGF) mRNA and protein expression by regulating its promoter.</csml:comment>
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PMID: 18049472, 12881412
In endothelial cells, the ISG product guanylate binding protein 1, interferon-inducible, 67 kDa (GBP1), functioned as an inflammatory response factor inhibiting endothelial cell proliferation and angiogenesis in part through MMPs.</csml:comment>
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PMID: 18049472, 14607926
Type I IFNs also activate p38, and inactivation of p38 blocks induction by IFN-beta of CXCL11 and TNFSF10 (encoding tumour necrosis factor-related apoptosis-inducing ligand, APO2L/TRAIL)68 and of CXCL10 (encoding the chemokine IP-10; also known as IFN-gamma-induced peptide, 10 kDa) in primary leukocytes.</csml:comment>
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PMID: 18049472
In addition, they cause apoptosis by activating caspases 8 and 10 through the interaction of FADD with IPS1.</csml:comment>
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PMID: 18049472, 17969446
Serine 727 of STAT1 is phosphorylated in response to IFN-gamma by the kinase cascade PI3K&#8212;AKT&#8212;PKC&#8212;MKK4&#8212;p38 (MKK4, mitogen-activated protein kinase kinase 4; also known as MAP2K4), with some variation in the activation of different PKC or MKK proteins in different cells.</csml:comment>
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PMID: 18049472, 17969446
Serine 727 of STAT1 is phosphorylated in response to IFN-gamma by the kinase cascade PI3K&#8212;AKT&#8212;PKC&#8212;MKK4&#8212;p38 (MKK4, mitogen-activated protein kinase kinase 4; also known as MAP2K4), with some variation in the activation of different PKC or MKK proteins in different cells.</csml:comment>
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